MELO3C020280T3 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C020280T3
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Double-stranded RNA-binding 4
Location	chr6 : 13862869 .. 13864328 (-)
Sequence length	639

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTGGAAAGACCTATATACACAACTAAACACCATAAAGGCTCGGTTCCATTGTTCCAGTCCACCTTGGTTTTTGATGGTGTGGTTTATACTAGTGATCTTAGTAGGACTAAGAAAGAGGCAGAGCAATTGGCAGCACGTGCAGCTATTCTTTCACTTCATGGTATTTAATCGTTGTAAACTAGTACTAAATTATTTCGAAATATTTGGTGCCTTGAATAAGTTTATTATTTTTTTTTTAAAAAAAATTCAACTATAAGGATAACAATTATTATTATTTTGTAGAAGATGCAATAAATATTAAATCACAAAAAACTCTTGCGGACATCATTGCATCTAAAGTCAGATTCCATGCAATGTTGCAAAAGGTTAAAGATTCACATTTTTCTCAAATTCAACCGAAATCCATGCCTGAAAATACAGTGGAACGTGTTGCAATGACAGTTAATGAAGATAAAAATGTTAAAGATGCTGTTTCAGACAGTGGAGTGGTATGTGGTGCAATTTCAGAGGCTTGTCCAACTTCTCTATTTCGACCTGAATTTAGTTCAACAAAACCGGAAGGATCATCCCCTCTAGTGAGACTCCCAATAGAATTTGTGCCTTCAACTTTAGAGGTGCCTGTTGGTGATCATGCAACAACTGGGTCTAAAAGGAGATCTAAGAACAAGAGAAAGGCACGTAAGAAACTGTGTATGGAGAACGGGTAATTTTCTTTTCATGAAACTTCATCCAACATGTATATTTTCATTGGTTGGGGGTTTTGTTGTCGTTGTAATTATAAATTTTGATAATTTACAGTTAAGAACTCCACTGCGCATTTATTTTATGGTTTTTATTACATAATTGTTTACAATAAACACCAGTCTTGTTACAACTAGAGCTAATCAATTTGCATGTTCATGGAAACAAGAAAATCAATCTAAATTTCTGTGGTAGGACTACTAGGCTGCAATTTACTTCAATGAAAAAGTGAAGTGATTGATATCCTTTCAAGGTAAGGTGTGGATTTAAATCATGATGGTAGTCACCTAAGATACTATAATATCTTACAACTTTCTTAATTCTCAATGTAGTATCGAGTAAGATTTGATAGTTGTGCCTATGATTAATATAGATTTGTTTAACTTATTCTGGTGCCCACAGTTGTTAAAAATGCACAAAAACTGAGGGGCCTTTGTTTTGTCTACAATATGATGTGTGGTATGGATAGTAAATGAATTCAAATGTGTGATTAGTTGGAGAGAAGTTACTCTTGTATTATTGGGCTATATGATAGGAGAGATGGCATGTCCCCTCAAGACTTCTGCTATTGCTGTGTTCTTAAATTATATTAACTTAGGTTCCATATGTGTAAGTTATTTCCATCGTATAACTAAATCTCCTTTTTGCTAAAAATGACCAGGGTGGCTACCGAAACGAGTCAAACTGCTGCTCCTTGCTCCGTAGCTCAATGA

mRNA sequence

ATGGGTTTGGAAAGACCTATATACACAACTAAACACCATAAAGGCTCGGTTCCATTGTTCCAGTCCACCTTGGTTTTTGATGGTGTGGTTTATACTAGTGATCTTAGTAGGACTAAGAAAGAGGCAGAGCAATTGGCAGCACGTGCAGCTATTCTTTCACTTCATGAAGATGCAATAAATATTAAATCACAAAAAACTCTTGCGGACATCATTGCATCTAAAGTCAGATTCCATGCAATGTTGCAAAAGGTTAAAGATTCACATTTTTCTCAAATTCAACCGAAATCCATGCCTGAAAATACAGTGGAACGTGTTGCAATGACAGTTAATGAAGATAAAAATGTTAAAGATGCTGTTTCAGACAGTGGAGTGGTATGTGGTGCAATTTCAGAGGCTTGTCCAACTTCTCTATTTCGACCTGAATTTAGTTCAACAAAACCGGAAGGATCATCCCCTCTAGTGAGACTCCCAATAGAATTTGTGCCTTCAACTTTAGAGGTGCCTGTTGGTGATCATGCAACAACTGGGTCTAAAAGGAGATCTAAGAACAAGAGAAAGGCACGTAAGAAACTGTGTATGGAGAACGGGGTGGCTACCGAAACGAGTCAAACTGCTGCTCCTTGCTCCGTAGCTCAATGA

Coding sequence (CDS)

ATGGGTTTGGAAAGACCTATATACACAACTAAACACCATAAAGGCTCGGTTCCATTGTTCCAGTCCACCTTGGTTTTTGATGGTGTGGTTTATACTAGTGATCTTAGTAGGACTAAGAAAGAGGCAGAGCAATTGGCAGCACGTGCAGCTATTCTTTCACTTCATGAAGATGCAATAAATATTAAATCACAAAAAACTCTTGCGGACATCATTGCATCTAAAGTCAGATTCCATGCAATGTTGCAAAAGGTTAAAGATTCACATTTTTCTCAAATTCAACCGAAATCCATGCCTGAAAATACAGTGGAACGTGTTGCAATGACAGTTAATGAAGATAAAAATGTTAAAGATGCTGTTTCAGACAGTGGAGTGGTATGTGGTGCAATTTCAGAGGCTTGTCCAACTTCTCTATTTCGACCTGAATTTAGTTCAACAAAACCGGAAGGATCATCCCCTCTAGTGAGACTCCCAATAGAATTTGTGCCTTCAACTTTAGAGGTGCCTGTTGGTGATCATGCAACAACTGGGTCTAAAAGGAGATCTAAGAACAAGAGAAAGGCACGTAAGAAACTGTGTATGGAGAACGGGGTGGCTACCGAAACGAGTCAAACTGCTGCTCCTTGCTCCGTAGCTCAATGA

Protein sequence

MGLERPIYTTKHHKGSVPLFQSTLVFDGVVYTSDLSRTKKEAEQLAARAAILSLHEDAINIKSQKTLADIIASKVRFHAMLQKVKDSHFSQIQPKSMPENTVERVAMTVNEDKNVKDAVSDSGVVCGAISEACPTSLFRPEFSSTKPEGSSPLVRLPIEFVPSTLEVPVGDHATTGSKRRSKNKRKARKKLCMENGVATETSQTAAPCSVAQ*

Homology

[Close]

BLAST of MELO3C020280T3 vs. TrEMBL
Match: A0A0A0LCN7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G345370 PE=4 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 8.9e-96
Identity = 183/212 (86.32%), Postives = 194/212 (91.51%), Query Frame = 1


Query: 1   MGLERPIYTTKHHKGSVPLFQSTLVFDGVVYTSDLSRTKKEAEQLAARAAILSLHEDAIN 60
           MGLERPIYTTKH++GSV  FQSTLVFDGVVYTSDL RTKKEAEQLAARAAILSLHEDA N
Sbjct: 114 MGLERPIYTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAEQLAARAAILSLHEDATN 173

Query: 61  IKSQKTLADIIASKVRFHAMLQKVKDSHFSQIQPKSMPENTVERVAMTVNEDKNVKDAVS 120
            KSQK L DIIASKVRFHAMLQKVKDS+FSQ QPKSMPENTVERVAMTVNE K +KDAV 
Sbjct: 174 PKSQKALGDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVERVAMTVNEGKELKDAVL 233

Query: 121 DSGVVCGAISEACPTSLFRPEFSSTKPEGSSPLVRLPIEFVPSTLEVPVGDHATTGSKRR 180
           D G+VCGAISEACPTS F+PEFS+TKP+GSSPL+RLPIEFV STLE PVG HAT GSKR+
Sbjct: 234 DGGMVCGAISEACPTSQFQPEFSATKPDGSSPLMRLPIEFVRSTLEEPVGYHATIGSKRK 293

Query: 181 SKNKRKARKKLCMENGVATETSQTAAPCSVAQ 213
           SKNKRKARKKLCMEN VATETSQTAAPCSVA+
Sbjct: 294 SKNKRKARKKLCMENRVATETSQTAAPCSVAR 325

[Close]

BLAST of MELO3C020280T3 vs. TrEMBL
Match: D7TSR3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g01440 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.4e-26
Identity = 91/220 (41.36%), Postives = 118/220 (53.64%), Query Frame = 1


Query: 1   MGLERPIYTTKHHKGSVPLFQSTLVFDGVVYTSDLSRTKKEAEQLAARAAILSLHEDAIN 60
           M LE+P YTT   +G +P+F S+LVF+GV YT D  R KKEAEQLAAR  ILS+     N
Sbjct: 119 MNLEKPTYTTVQPEGLLPVFVSSLVFNGVTYTGDAGRNKKEAEQLAARTVILSI---LGN 178

Query: 61  IKSQKTLADIIASKVRFHAMLQKVKDSHF--SQIQP----KSMPENTVERVAMTVNEDKN 120
             S   L++II SKV+ +A L +VKD  +  + I P      +P    + V +    D+ 
Sbjct: 179 SGSGTLLSEIIKSKVKLYAALHRVKDPSYIHTGILPIGLTSGIPPCKGKEVEVAPGTDQL 238

Query: 121 VKDAVSDSGVVCGAISEACPTSLFRPEFSSTKPEGSSPLVRLPIEFVPSTLEVPVGDHAT 180
           +  AVS    + G +     T     E    KP  SS ++  PI FVPS  E P+    T
Sbjct: 239 LPTAVSVP--LSGQLVHVPVTHPPVHELEKPKPNVSSEVIAPPISFVPSVFEQPLVVSPT 298

Query: 181 TGSKRRSKNKRKARKKLCMEN--GVATETSQTAAPCSVAQ 213
           TG KR  KNK+KA KKL  +    VA      A+PCSVAQ
Sbjct: 299 TGRKRNRKNKKKANKKLRTDAQLPVAVLPLNQASPCSVAQ 333

[Close]

BLAST of MELO3C020280T3 vs. TrEMBL
Match: D7TSR3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g01440 PE=4 SV=1)

HSP 1 Score: 30.4 bits (67), Expect = 3.3e+03
Identity = 20/48 (41.67%), Postives = 27/48 (56.25%), Query Frame = 1


Query: 6  PIYTTKHHKGS-VPLFQSTLVFDGVVYTS-DLSRTKKEAEQLAARAAI 52
          PIY T +      P F+ST++ DG  YTS +    +K AEQ  AR A+
Sbjct: 39 PIYQTVNEGFQHAPKFRSTVLVDGATYTSPNTFSHRKAAEQDVARLAL 86

HSP 2 Score: 102.8 bits (255), Expect = 5.2e-19
Identity = 80/218 (36.70%), Postives = 118/218 (54.13%), Query Frame = 1


Query: 1   MGLERPIYTTKHHKGSVPLFQSTLVFDGVVYTSDLSRTKKEAEQLAARAAILSLHEDAIN 60
           M  E+P Y T    G +P+F STLVF+GV YT D  R KKEAEQLAARA ILS+  D+ +
Sbjct: 147 MHQEKPAYNTIQPGGLIPVFVSTLVFNGVSYTGDKGRNKKEAEQLAARAIILSI-LDSAD 206

Query: 61  IKSQKTLADIIASKVRFHAMLQKVKDSHFSQIQPKSMPENTVERVAMTVNEDKNVKDAVS 120
             S   +++II SK + +A + K++D++       S+  NT E   + +++ K  +  V 
Sbjct: 207 SASATLMSEIIKSKSKLYAAVNKIRDANSIHSAVNSV--NTWEDPGVLLSKGKVAQ--VG 266

Query: 121 DSGVVCGAISEACPTSL----FRPEFSSTKPEGSSPLVRLPIEFVPSTLEVPVGDHATTG 180
            +     +++E+  T      F P F   K E S+ +V  PI FVP  L  P+   +T+G
Sbjct: 267 KTTASFPSLAESAKTHATHVPFHP-FKKPKLETSTEVVAPPIVFVPPVLGQPL-HSSTSG 326

Query: 181 SKRRSKNKRKAR--KKLCMENGVATETSQTAAPCSVAQ 213
            KR  KNK+KA+   ++  +  VA         CSVAQ
Sbjct: 327 VKRNRKNKKKAKVGVQIGPQIPVAVGPLNQIPSCSVAQ 357

[Close]

BLAST of MELO3C020280T3 vs. TrEMBL
Match: U5GC64_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s14370g PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.0e-18
Identity = 79/236 (33.47%), Postives = 105/236 (44.49%), Query Frame = 1


Query: 4   ERPIYTTKHHKGSVPLFQSTLVFDGVVYTSDLSRTKKEAEQLAARAAILSLHEDAINIKS 63
           E+P Y T    G +P+F STLVFDGV YT D  R KKEAEQLAARA ILSL     N  S
Sbjct: 239 EKPTYNTVQSPGLLPVFISTLVFDGVSYTGDAGRNKKEAEQLAARAVILSL---IGNSGS 298

Query: 64  QKTLADIIASKVRFHAMLQKVKDSHFSQIQPKSMPENTVERVAMTVNEDKNVKDAV---- 123
            K L +II SK + +A L +VKD   SQ     +          TV++++ V  AV    
Sbjct: 299 SKILYEIIKSKSKLYAALDRVKDPSHSQPNIVPVAVKVGHCSETTVDQEQEVSTAVVRDA 358

Query: 124 -----------------------SDSGVVCGAISEACPTSLFRPEFSSTKPEGSSPLVRL 183
                                   +  V    + +A P S   P  S   P         
Sbjct: 359 APVSANIVPVAVKVGHCSETTVDQEQEVSTAVVRDAVPVSAIPPAASGMHPSHHDSKRPR 418

Query: 184 PIEFVPSTLEVPVGDHATTGSKRRSKNKRKARKKLCMENGVATETSQTAAPCSVAQ 213
           P +  P + +  V D  ++ +K+R KNK+K  K+   +          A+PCSVAQ
Sbjct: 419 P-DLHPVSEQPLVVDFGSSSAKKRRKNKKKDNKETDTQFPTDAIPLNQASPCSVAQ 470

[Close]

BLAST of MELO3C020280T3 vs. TrEMBL
Match: A0A061EHS9_THECC (DsRNA-binding domain-like superfamily protein, putative OS=Theobroma cacao GN=TCM_019209 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 5.7e-18
Identity = 72/189 (38.10%), Postives = 104/189 (55.03%), Query Frame = 1


Query: 1   MGLERPIYTTKHHKGSVPLFQSTLVFDGVVYTSDLSRTKKEAEQLAARAAILSLHEDAIN 60
           M +E P Y T   +G +PLF S+LVF+ V Y+    R KKEAEQLAARAA+LSL +D+  
Sbjct: 127 MNMEMPSYNTIQSEGLIPLFVSSLVFNDVTYSGKTGRNKKEAEQLAARAALLSLLDDS-- 186

Query: 61  IKSQKTLADIIASKVRFHAMLQKVKDSHFSQIQPKSMPENTVERVAMTVNEDKNVKDAVS 120
            +    L++II SK + +  L KVKDS  S I       NT      ++++++ ++ AV 
Sbjct: 187 -RYGTFLSEIIKSKAKLYVALNKVKDSSISHIGTTPAGANT------SIHKNEEIETAVV 246

Query: 121 DSGVVCGAISEACPTSLFRPE--FSSTKPEGSSPLVRLPIEFVPSTL--EVPVGDHATTG 180
            + V    I  +  +   RP   F   K E  S  + LPI FVP+ +   +PVG+  ++ 
Sbjct: 247 TNSVPNTVILPS-SSGAKRPHHVFKIEKLEEGSEHIDLPIVFVPTAVAESLPVGE--SSS 303

Query: 181 SKRRSKNKR 186
            KRR K KR
Sbjct: 307 RKRRRKKKR 303

[Close]

BLAST of MELO3C020280T3 vs. NCBI nr
Match: gi|659114468|ref|XP_008457066.1| (PREDICTED: uncharacterized protein LOC103496837 isoform X1 [Cucumis melo])

HSP 1 Score: 416.4 bits (1069), Expect = 3.0e-113
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 1


Query: 1   MGLERPIYTTKHHKGSVPLFQSTLVFDGVVYTSDLSRTKKEAEQLAARAAILSLHEDAIN 60
           MGLERPIYTTKHHKGSVPLFQSTLVFDGVVYTSDLSRTKKEAEQLAARAAILSLHEDAIN
Sbjct: 174 MGLERPIYTTKHHKGSVPLFQSTLVFDGVVYTSDLSRTKKEAEQLAARAAILSLHEDAIN 233

Query: 61  IKSQKTLADIIASKVRFHAMLQKVKDSHFSQIQPKSMPENTVERVAMTVNEDKNVKDAVS 120
           IKSQKTLADIIASKVRFHAMLQKVKDSHFSQIQPKSMPENTVERVAMTVNEDKNVKDAVS
Sbjct: 234 IKSQKTLADIIASKVRFHAMLQKVKDSHFSQIQPKSMPENTVERVAMTVNEDKNVKDAVS 293

Query: 121 DSGVVCGAISEACPTSLFRPEFSSTKPEGSSPLVRLPIEFVPSTLEVPVGDHATTGSKRR 180
           DSGVVCGAISEACPTSLFRPEFSSTKPEGSSPLVRLPIEFVPSTLEVPVGDHATTGSKRR
Sbjct: 294 DSGVVCGAISEACPTSLFRPEFSSTKPEGSSPLVRLPIEFVPSTLEVPVGDHATTGSKRR 353

Query: 181 SKNKRKARKKLCMENGVATETSQTAAPCSVAQ 213
           SKNKRKARKKLCMENGVATETSQTAAPCSVAQ
Sbjct: 354 SKNKRKARKKLCMENGVATETSQTAAPCSVAQ 385

[Close]

BLAST of MELO3C020280T3 vs. NCBI nr
Match: gi|659114470|ref|XP_008457067.1| (PREDICTED: double-stranded RNA-binding protein 4-like isoform X2 [Cucumis melo])

HSP 1 Score: 409.8 bits (1052), Expect = 2.8e-111
Identity = 211/212 (99.53%), Postives = 211/212 (99.53%), Query Frame = 1


Query: 1   MGLERPIYTTKHHKGSVPLFQSTLVFDGVVYTSDLSRTKKEAEQLAARAAILSLHEDAIN 60
           MGLERPIYTTKHHKGSVPLFQSTLVFDGVVYTSDLSRTKKEAEQLAARAAILSLH DAIN
Sbjct: 174 MGLERPIYTTKHHKGSVPLFQSTLVFDGVVYTSDLSRTKKEAEQLAARAAILSLH-DAIN 233

Query: 61  IKSQKTLADIIASKVRFHAMLQKVKDSHFSQIQPKSMPENTVERVAMTVNEDKNVKDAVS 120
           IKSQKTLADIIASKVRFHAMLQKVKDSHFSQIQPKSMPENTVERVAMTVNEDKNVKDAVS
Sbjct: 234 IKSQKTLADIIASKVRFHAMLQKVKDSHFSQIQPKSMPENTVERVAMTVNEDKNVKDAVS 293

Query: 121 DSGVVCGAISEACPTSLFRPEFSSTKPEGSSPLVRLPIEFVPSTLEVPVGDHATTGSKRR 180
           DSGVVCGAISEACPTSLFRPEFSSTKPEGSSPLVRLPIEFVPSTLEVPVGDHATTGSKRR
Sbjct: 294 DSGVVCGAISEACPTSLFRPEFSSTKPEGSSPLVRLPIEFVPSTLEVPVGDHATTGSKRR 353

Query: 181 SKNKRKARKKLCMENGVATETSQTAAPCSVAQ 213
           SKNKRKARKKLCMENGVATETSQTAAPCSVAQ
Sbjct: 354 SKNKRKARKKLCMENGVATETSQTAAPCSVAQ 384

[Close]

BLAST of MELO3C020280T3 vs. NCBI nr
Match: gi|700202703|gb|KGN57836.1| (hypothetical protein Csa_3G345370 [Cucumis sativus])

HSP 1 Score: 357.8 bits (917), Expect = 1.3e-95
Identity = 183/212 (86.32%), Postives = 194/212 (91.51%), Query Frame = 1


Query: 1   MGLERPIYTTKHHKGSVPLFQSTLVFDGVVYTSDLSRTKKEAEQLAARAAILSLHEDAIN 60
           MGLERPIYTTKH++GSV  FQSTLVFDGVVYTSDL RTKKEAEQLAARAAILSLHEDA N
Sbjct: 114 MGLERPIYTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAEQLAARAAILSLHEDATN 173

Query: 61  IKSQKTLADIIASKVRFHAMLQKVKDSHFSQIQPKSMPENTVERVAMTVNEDKNVKDAVS 120
            KSQK L DIIASKVRFHAMLQKVKDS+FSQ QPKSMPENTVERVAMTVNE K +KDAV 
Sbjct: 174 PKSQKALGDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVERVAMTVNEGKELKDAVL 233

Query: 121 DSGVVCGAISEACPTSLFRPEFSSTKPEGSSPLVRLPIEFVPSTLEVPVGDHATTGSKRR 180
           D G+VCGAISEACPTS F+PEFS+TKP+GSSPL+RLPIEFV STLE PVG HAT GSKR+
Sbjct: 234 DGGMVCGAISEACPTSQFQPEFSATKPDGSSPLMRLPIEFVRSTLEEPVGYHATIGSKRK 293

Query: 181 SKNKRKARKKLCMENGVATETSQTAAPCSVAQ 213
           SKNKRKARKKLCMEN VATETSQTAAPCSVA+
Sbjct: 294 SKNKRKARKKLCMENRVATETSQTAAPCSVAR 325

[Close]

BLAST of MELO3C020280T3 vs. NCBI nr
Match: gi|449464150|ref|XP_004149792.1| (PREDICTED: uncharacterized protein LOC101213863 isoform X1 [Cucumis sativus])

HSP 1 Score: 357.8 bits (917), Expect = 1.3e-95
Identity = 183/212 (86.32%), Postives = 194/212 (91.51%), Query Frame = 1


Query: 1   MGLERPIYTTKHHKGSVPLFQSTLVFDGVVYTSDLSRTKKEAEQLAARAAILSLHEDAIN 60
           MGLERPIYTTKH++GSV  FQSTLVFDGVVYTSDL RTKKEAEQLAARAAILSLHEDA N
Sbjct: 174 MGLERPIYTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAEQLAARAAILSLHEDATN 233

Query: 61  IKSQKTLADIIASKVRFHAMLQKVKDSHFSQIQPKSMPENTVERVAMTVNEDKNVKDAVS 120
            KSQK L DIIASKVRFHAMLQKVKDS+FSQ QPKSMPENTVERVAMTVNE K +KDAV 
Sbjct: 234 PKSQKALGDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVERVAMTVNEGKELKDAVL 293

Query: 121 DSGVVCGAISEACPTSLFRPEFSSTKPEGSSPLVRLPIEFVPSTLEVPVGDHATTGSKRR 180
           D G+VCGAISEACPTS F+PEFS+TKP+GSSPL+RLPIEFV STLE PVG HAT GSKR+
Sbjct: 294 DGGMVCGAISEACPTSQFQPEFSATKPDGSSPLMRLPIEFVRSTLEEPVGYHATIGSKRK 353

Query: 181 SKNKRKARKKLCMENGVATETSQTAAPCSVAQ 213
           SKNKRKARKKLCMEN VATETSQTAAPCSVA+
Sbjct: 354 SKNKRKARKKLCMENRVATETSQTAAPCSVAR 385

[Close]

BLAST of MELO3C020280T3 vs. NCBI nr
Match: gi|778680845|ref|XP_011651405.1| (PREDICTED: double-stranded RNA-binding protein 4 isoform X2 [Cucumis sativus])

HSP 1 Score: 351.3 bits (900), Expect = 1.2e-93
Identity = 182/212 (85.85%), Postives = 193/212 (91.04%), Query Frame = 1


Query: 1   MGLERPIYTTKHHKGSVPLFQSTLVFDGVVYTSDLSRTKKEAEQLAARAAILSLHEDAIN 60
           MGLERPIYTTKH++GSV  FQSTLVFDGVVYTSDL RTKKEAEQLAARAAILSLH DA N
Sbjct: 174 MGLERPIYTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAEQLAARAAILSLH-DATN 233

Query: 61  IKSQKTLADIIASKVRFHAMLQKVKDSHFSQIQPKSMPENTVERVAMTVNEDKNVKDAVS 120
            KSQK L DIIASKVRFHAMLQKVKDS+FSQ QPKSMPENTVERVAMTVNE K +KDAV 
Sbjct: 234 PKSQKALGDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVERVAMTVNEGKELKDAVL 293

Query: 121 DSGVVCGAISEACPTSLFRPEFSSTKPEGSSPLVRLPIEFVPSTLEVPVGDHATTGSKRR 180
           D G+VCGAISEACPTS F+PEFS+TKP+GSSPL+RLPIEFV STLE PVG HAT GSKR+
Sbjct: 294 DGGMVCGAISEACPTSQFQPEFSATKPDGSSPLMRLPIEFVRSTLEEPVGYHATIGSKRK 353

Query: 181 SKNKRKARKKLCMENGVATETSQTAAPCSVAQ 213
           SKNKRKARKKLCMEN VATETSQTAAPCSVA+
Sbjct: 354 SKNKRKARKKLCMENRVATETSQTAAPCSVAR 384

The following BLAST results are available for this feature:

BLAST of MELO3C020280T3 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCN7_CUCSA	8.9e-96	86.32	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G345370 PE=4 SV=1	[more]
D7TSR3_VITVI	4.4e-26	41.36	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g01440 PE=4 SV=...	[more]
D7TSR3_VITVI	3.3e+03	41.67	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g01440 PE=4 SV=...	[more]
U5GC64_POPTR	2.0e-18	33.47	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s14370g PE=4 SV=1	[more]
A0A061EHS9_THECC	5.7e-18	38.10	DsRNA-binding domain-like superfamily protein, putative OS=Theobroma cacao GN=TC...	[more]

BLAST of MELO3C020280T3 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659114468\|ref\|XP_008457066.1\|	3.0e-113	100.00	PREDICTED: uncharacterized protein LOC103496837 isoform X1 [Cucumis melo]	[more]
gi\|659114470\|ref\|XP_008457067.1\|	2.8e-111	99.53	PREDICTED: double-stranded RNA-binding protein 4-like isoform X2 [Cucumis melo]	[more]
gi\|700202703\|gb\|KGN57836.1\|	1.3e-95	86.32	hypothetical protein Csa_3G345370 [Cucumis sativus]	[more]
gi\|449464150\|ref\|XP_004149792.1\|	1.3e-95	86.32	PREDICTED: uncharacterized protein LOC101213863 isoform X1 [Cucumis sativus]	[more]
gi\|778680845\|ref\|XP_011651405.1\|	1.2e-93	85.85	PREDICTED: double-stranded RNA-binding protein 4 isoform X2 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR014720	dsRBD_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003725	double-stranded RNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C020280	MELO3C020280	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C020280T3	MELO3C020280T3-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C020280T3.cds3	MELO3C020280T3.cds3	CDS
MELO3C020280T3.cds2	MELO3C020280T3.cds2	CDS
MELO3C020280T3.cds1	MELO3C020280T3.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014720	Double-stranded RNA-binding domain	GENE3D	G3DSA:3.30.160.20		coord: 4..55 score: 2.
IPR014720	Double-stranded RNA-binding domain	PFAM	PF00035	dsrm	coord: 5..53 score: 1.
IPR014720	Double-stranded RNA-binding domain	PROFILE	PS50137	DS_RBD	coord: 20..56 score: 8
None	No IPR available	PANTHER	PTHR11207	RIBONUCLEASE III	coord: 1..121 score: 2.2
None	No IPR available	PANTHER	PTHR11207:SF8	SUBFAMILY NOT NAMED	coord: 1..121 score: 2.2
None	No IPR available	unknown	SSF54768	dsRNA-binding domain-like	coord: 3..56 score: 1.4