MELO3C020019T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C020019T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
Descriptionmyb domain protein 83
Locationchr3 : 19167970 .. 19168272 (+)
Sequence length303
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCGCTTCTCTGAGACATTCGCCGATATTGGATCTAACAAGCCATTGAGTATGAGTGGTTTGACATGCCGGATGAGAACGATTTCCTATCTATGTGTAGCTAAGGAATTGACATGTTCTAGGAGGATGTACACACATCACAAACTTCTCGTACGTCAGAGTGGCCGATCGAGCGAATTGAAGAGGAAGAGGGGAAGCCAGCGAGAGGGCAAGATTGAAGTCATACATATGACCCTCGAGTGTACCAATGACCAACTCATGACGATTGCCGAGTGGTCTGCACAACGCCCTTGCCAATGA

mRNA sequence

ATGGGTCGCTTCTCTGAGACATTCGCCGATATTGGATCTAACAAGCCATTGAGTATGAGTGGTTTGACATGCCGGATGAGAACGATTTCCTATCTATGTGTAGCTAAGGAATTGACATGTTCTAGGAGGATGTACACACATCACAAACTTCTCGTACGTCAGAGTGGCCGATCGAGCGAATTGAAGAGGAAGAGGGGAAGCCAGCGAGAGGGCAAGATTGAAGTCATACATATGACCCTCGAGTGTACCAATGACCAACTCATGACGATTGCCGAGTGGTCTGCACAACGCCCTTGCCAATGA

Coding sequence (CDS)

ATGGGTCGCTTCTCTGAGACATTCGCCGATATTGGATCTAACAAGCCATTGAGTATGAGTGGTTTGACATGCCGGATGAGAACGATTTCCTATCTATGTGTAGCTAAGGAATTGACATGTTCTAGGAGGATGTACACACATCACAAACTTCTCGTACGTCAGAGTGGCCGATCGAGCGAATTGAAGAGGAAGAGGGGAAGCCAGCGAGAGGGCAAGATTGAAGTCATACATATGACCCTCGAGTGTACCAATGACCAACTCATGACGATTGCCGAGTGGTCTGCACAACGCCCTTGCCAATGA

Protein sequence

MGRFSETFADIGSNKPLSMSGLTCRMRTISYLCVAKELTCSRRMYTHHKLLVRQSGRSSELKRKRGSQREGKIEVIHMTLECTNDQLMTIAEWSAQRPCQ*
Homology
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BLAST of MELO3C020019T1 vs. NCBI nr
Match: gi|659093712|ref|XP_008447677.1| (PREDICTED: uncharacterized protein LOC103490086 [Cucumis melo])

HSP 1 Score: 72.8 bits (177), Expect = 3.9e-10
Identity = 41/97 (42.27%), Postives = 53/97 (54.64%), Query Frame = 1 

Query: 3   RFSETFADIGSNKPLSMSGLTCRMRTISYLCVAKELTCSRRMYTHHKLLVRQSG---RSS 62
           RF ETF DIGSN+P+   G         +  +  +     +   H       S    RSS
Sbjct: 196 RFIETFTDIGSNEPIRYEGFNMSDGNEEFSSIYSQGIDMSQEDVHASQPAHTSNSRARSS 255

Query: 63  ELKRKRGSQREGKIEVIHMTLECTNDQLMTIAEWSAQ 97
            LKRKRGSQ++G+I+VIHM L+C NDQL  I EW A+
Sbjct: 256 RLKRKRGSQQKGEIKVIHMALKCMNDQLKKIVEWHAR 292

The following BLAST results are available for this feature:
BLAST of MELO3C020019T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659093712|ref|XP_008447677.1|3.9e-1042.27PREDICTED: uncharacterized protein LOC103490086 [Cucumis melo][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C020019MELO3C020019gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C020019T1MELO3C020019T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C020019T1.cds1MELO3C020019T1.cds1CDS