MELO3C020019 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C020019
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
Descriptionmyb domain protein 83
Locationchr3 : 19167970 .. 19168272 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCGCTTCTCTGAGACATTCGCCGATATTGGATCTAACAAGCCATTGAGTATGAGTGGTTTGACATGCCGGATGAGAACGATTTCCTATCTATGTGTAGCTAAGGAATTGACATGTTCTAGGAGGATGTACACACATCACAAACTTCTCGTACGTCAGAGTGGCCGATCGAGCGAATTGAAGAGGAAGAGGGGAAGCCAGCGAGAGGGCAAGATTGAAGTCATACATATGACCCTCGAGTGTACCAATGACCAACTCATGACGATTGCCGAGTGGTCTGCACAACGCCCTTGCCAATGA

mRNA sequence

ATGGGTCGCTTCTCTGAGACATTCGCCGATATTGGATCTAACAAGCCATTGAGTATGAGTGGTTTGACATGCCGGATGAGAACGATTTCCTATCTATGTGTAGCTAAGGAATTGACATGTTCTAGGAGGATGTACACACATCACAAACTTCTCGTACGTCAGAGTGGCCGATCGAGCGAATTGAAGAGGAAGAGGGGAAGCCAGCGAGAGGGCAAGATTGAAGTCATACATATGACCCTCGAGTGTACCAATGACCAACTCATGACGATTGCCGAGTGGTCTGCACAACGCCCTTGCCAATGA

Coding sequence (CDS)

ATGGGTCGCTTCTCTGAGACATTCGCCGATATTGGATCTAACAAGCCATTGAGTATGAGTGGTTTGACATGCCGGATGAGAACGATTTCCTATCTATGTGTAGCTAAGGAATTGACATGTTCTAGGAGGATGTACACACATCACAAACTTCTCGTACGTCAGAGTGGCCGATCGAGCGAATTGAAGAGGAAGAGGGGAAGCCAGCGAGAGGGCAAGATTGAAGTCATACATATGACCCTCGAGTGTACCAATGACCAACTCATGACGATTGCCGAGTGGTCTGCACAACGCCCTTGCCAATGA

Protein sequence

MGRFSETFADIGSNKPLSMSGLTCRMRTISYLCVAKELTCSRRMYTHHKLLVRQSGRSSELKRKRGSQREGKIEVIHMTLECTNDQLMTIAEWSAQRPCQ*
Homology
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BLAST of MELO3C020019 vs. NCBI nr
Match: gi|659093712|ref|XP_008447677.1| (PREDICTED: uncharacterized protein LOC103490086 [Cucumis melo])

HSP 1 Score: 72.8 bits (177), Expect = 3.9e-10
Identity = 41/97 (42.27%), Postives = 53/97 (54.64%), Query Frame = 1 

Query: 3   RFSETFADIGSNKPLSMSGLTCRMRTISYLCVAKELTCSRRMYTHHKLLVRQSG---RSS 62
           RF ETF DIGSN+P+   G         +  +  +     +   H       S    RSS
Sbjct: 196 RFIETFTDIGSNEPIRYEGFNMSDGNEEFSSIYSQGIDMSQEDVHASQPAHTSNSRARSS 255

Query: 63  ELKRKRGSQREGKIEVIHMTLECTNDQLMTIAEWSAQ 97
            LKRKRGSQ++G+I+VIHM L+C NDQL  I EW A+
Sbjct: 256 RLKRKRGSQQKGEIKVIHMALKCMNDQLKKIVEWHAR 292

The following BLAST results are available for this feature:
BLAST of MELO3C020019 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659093712|ref|XP_008447677.1|3.9e-1042.27PREDICTED: uncharacterized protein LOC103490086 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C020019T1MELO3C020019T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C020019Cucumber (Gy14) v1cgymeB536
MELO3C020019Cucurbita maxima (Rimu)cmameB272
MELO3C020019Cucurbita maxima (Rimu)cmameB676
MELO3C020019Cucurbita moschata (Rifu)cmomeB263
MELO3C020019Cucurbita moschata (Rifu)cmomeB668
MELO3C020019Wild cucumber (PI 183967)cpimeB476
MELO3C020019Cucumber (Chinese Long) v2cumeB478
MELO3C020019Watermelon (Charleston Gray)mewcgB268
MELO3C020019Watermelon (97103) v1mewmB333
MELO3C020019Cucurbita pepo (Zucchini)cpemeB165
MELO3C020019Cucurbita pepo (Zucchini)cpemeB397
MELO3C020019Bottle gourd (USVL1VR-Ls)lsimeB256
MELO3C020019Cucumber (Gy14) v2cgybmeB418
MELO3C020019Silver-seed gourdcarmeB0021
MELO3C020019Silver-seed gourdcarmeB0269
MELO3C020019Cucumber (Chinese Long) v3cucmeB487
MELO3C020019Watermelon (97103) v2mewmbB280
MELO3C020019Wax gourdmewgoB331
MELO3C020019Wax gourdmewgoB353