MELO3C019658T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C019658T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRetrotransposon protein
Locationchr11 : 22569391 .. 22570048 (-)
Sequence length549
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGACCCTCAGAGGCAAGAAGAGGTTCGGAACTGACAGGGATGAGCAAAGGGAAAAAAGGAAACTGAGAGCGGAAGATACCATTGAAGAAAAAACAGACGGGAAGGAGAGACATCGCCGAGCGCAGAAACAGGGGCAGGGCAAGACCGGATTAAGTTTAAGAAGTTGGAGATGCCGGTATTCAATAAAGAAGACCCGGATGGCTGGTTTTATAGGGCCAGCATTATTTCCACTTACACCTTCTGAAAGAGCAAGAGAAGCTGAAGAGTGCAATGGTGAGTCTGAAGGAAAAGGATTGAGCTGATTCCGATGGGCAGAGAACCGGAAGCGTTTTCAATCATGGAAAGAAATGAACGAGAGGATGTATCATCATTTTCGCTATAGGGAACAAGGGACAAGATGTGCGAGCTATAAAACAGGAAGGATCGGTAAAGGATTACCTGCAGAAATTCGAAGAGTTGTTGCCACCATTGCCGAAGATGGCCGAAGACGTTCTGGTGGGGACATTCACGAACGGTCTTGACCCAGTGATTAAGACAGAAGTATTTGCCATGCGGACCGTTAACCTTGAAGACATGATGGATATGGCCCCATTAGCCGAGGAAAAAATTGAAATGGTCCGAAAGACACAGGACCCATATGGAAAACGGCCCTAA

mRNA sequence

ATGACGACCCTCAGAGGCAAGAAGAGGTTCGGAACTGACAGGGATGAGCAAAGGGAAAAAAGGAAACTGAGAGCGGAAGATACCATTGAAGAAAAAACAGACGGGAAGGAGAGACATCGCCGAGCGCAGAAACAGGGGCAGGGCAAGACCGGATTAAGTTTAAGAAGTTGGAGATGCCGGTATTCAATAAAGAAGACCCGGATGGCTGGTTTTATAGGGCCAGCATTATTTCCACTTACACCTTCTGAAAGAGCAAGAGAAGCTGAAGAGTGCAATGGGAACAAGGGACAAGATGTGCGAGCTATAAAACAGGAAGGATCGGTAAAGGATTACCTGCAGAAATTCGAAGAGTTGTTGCCACCATTGCCGAAGATGGCCGAAGACGTTCTGGTGGGGACATTCACGAACGGTCTTGACCCAGTGATTAAGACAGAAGTATTTGCCATGCGGACCGTTAACCTTGAAGACATGATGGATATGGCCCCATTAGCCGAGGAAAAAATTGAAATGGTCCGAAAGACACAGGACCCATATGGAAAACGGCCCTAA

Coding sequence (CDS)

ATGACGACCCTCAGAGGCAAGAAGAGGTTCGGAACTGACAGGGATGAGCAAAGGGAAAAAAGGAAACTGAGAGCGGAAGATACCATTGAAGAAAAAACAGACGGGAAGGAGAGACATCGCCGAGCGCAGAAACAGGGGCAGGGCAAGACCGGATTAAGTTTAAGAAGTTGGAGATGCCGGTATTCAATAAAGAAGACCCGGATGGCTGGTTTTATAGGGCCAGCATTATTTCCACTTACACCTTCTGAAAGAGCAAGAGAAGCTGAAGAGTGCAATGGGAACAAGGGACAAGATGTGCGAGCTATAAAACAGGAAGGATCGGTAAAGGATTACCTGCAGAAATTCGAAGAGTTGTTGCCACCATTGCCGAAGATGGCCGAAGACGTTCTGGTGGGGACATTCACGAACGGTCTTGACCCAGTGATTAAGACAGAAGTATTTGCCATGCGGACCGTTAACCTTGAAGACATGATGGATATGGCCCCATTAGCCGAGGAAAAAATTGAAATGGTCCGAAAGACACAGGACCCATATGGAAAACGGCCCTAA

Protein sequence

MTTLRGKKRFGTDRDEQREKRKLRAEDTIEEKTDGKERHRRAQKQGQGKTGLSLRSWRCRYSIKKTRMAGFIGPALFPLTPSERAREAEECNGNKGQDVRAIKQEGSVKDYLQKFEELLPPLPKMAEDVLVGTFTNGLDPVIKTEVFAMRTVNLEDMMDMAPLAEEKIEMVRKTQDPYGKRP*
Homology
[Close]
BLAST of MELO3C019658T1 vs. TrEMBL
Match: E5GC35_CUCME (Gypsy/ty3 element polyprotein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 7.8e-24
Identity = 58/80 (72.50%), Postives = 67/80 (83.75%), Query Frame = 1 

Query: 101 AIKQEGSVKDYLQKFEELLPPLPKMAEDVLVGTFTNGLDPVIKTEVFAMRTVNLEDMMDM 160
           AIK EGSV +YLQ+FEEL  PLP+MAEDVLVGTFT GLDPVI+TEVFAMR V LEDM+D+
Sbjct: 183 AIKHEGSVGEYLQRFEELSTPLPEMAEDVLVGTFTKGLDPVIRTEVFAMRVVGLEDMVDV 242

Query: 161 APLAEEKIEMVRKTQDPYGK 181
           A LAEEK+E+ R +  PY K
Sbjct: 243 ARLAEEKLEIARASHSPYAK 262

[Close]
BLAST of MELO3C019658T1 vs. TrEMBL
Match: E5GC18_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.4e-20
Identity = 54/78 (69.23%), Postives = 62/78 (79.49%), Query Frame = 1 

Query: 101 AIKQEGSVKDYLQKFEELLPPLPKMAEDVLVGTFTNGLDPVIKTEVFAMRTVNLEDMMDM 160
           AIKQEGSV +YLQKFEEL  PLP+MAE+VL GTFTNGLDP I+ EVFAMR V LED+M+ 
Sbjct: 155 AIKQEGSVSEYLQKFEELSAPLPEMAEEVLEGTFTNGLDPRIRKEVFAMRVVGLEDLMEA 214

Query: 161 APLAEEKIEMVRKTQDPY 179
           A LAEEK E+ +    PY
Sbjct: 215 AQLAEEKAEVTKGGPYPY 232

[Close]
BLAST of MELO3C019658T1 vs. TrEMBL
Match: E5GBA8_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.4e-11
Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = 1 

Query: 101 AIKQEGSVKDYLQKFEELLPPLPKMAEDVLVGTFTNGLDPVIKTE 146
           AIKQEG+V DYLQKFEEL  PLP+M EDVLVGTF+NGLD VIKTE
Sbjct: 9   AIKQEGTVNDYLQKFEELSAPLPEMVEDVLVGTFSNGLDTVIKTE 53

[Close]
BLAST of MELO3C019658T1 vs. NCBI nr
Match: gi|307136196|gb|ADN34034.1| (gypsy/ty3 element polyprotein [Cucumis melo subsp. melo])

HSP 1 Score: 118.6 bits (296), Expect = 1.1e-23
Identity = 58/80 (72.50%), Postives = 67/80 (83.75%), Query Frame = 1 

Query: 101 AIKQEGSVKDYLQKFEELLPPLPKMAEDVLVGTFTNGLDPVIKTEVFAMRTVNLEDMMDM 160
           AIK EGSV +YLQ+FEEL  PLP+MAEDVLVGTFT GLDPVI+TEVFAMR V LEDM+D+
Sbjct: 183 AIKHEGSVGEYLQRFEELSTPLPEMAEDVLVGTFTKGLDPVIRTEVFAMRVVGLEDMVDV 242

Query: 161 APLAEEKIEMVRKTQDPYGK 181
           A LAEEK+E+ R +  PY K
Sbjct: 243 ARLAEEKLEIARASHSPYAK 262

[Close]
BLAST of MELO3C019658T1 vs. NCBI nr
Match: gi|307136175|gb|ADN34016.1| (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 107.1 bits (266), Expect = 3.4e-20
Identity = 54/78 (69.23%), Postives = 62/78 (79.49%), Query Frame = 1 

Query: 101 AIKQEGSVKDYLQKFEELLPPLPKMAEDVLVGTFTNGLDPVIKTEVFAMRTVNLEDMMDM 160
           AIKQEGSV +YLQKFEEL  PLP+MAE+VL GTFTNGLDP I+ EVFAMR V LED+M+ 
Sbjct: 155 AIKQEGSVSEYLQKFEELSAPLPEMAEEVLEGTFTNGLDPRIRKEVFAMRVVGLEDLMEA 214

Query: 161 APLAEEKIEMVRKTQDPY 179
           A LAEEK E+ +    PY
Sbjct: 215 AQLAEEKAEVTKGGPYPY 232

[Close]
BLAST of MELO3C019658T1 vs. NCBI nr
Match: gi|307135885|gb|ADN33750.1| (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 76.6 bits (187), Expect = 4.9e-11
Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = 1 

Query: 101 AIKQEGSVKDYLQKFEELLPPLPKMAEDVLVGTFTNGLDPVIKTE 146
           AIKQEG+V DYLQKFEEL  PLP+M EDVLVGTF+NGLD VIKTE
Sbjct: 9   AIKQEGTVNDYLQKFEELSAPLPEMVEDVLVGTFSNGLDTVIKTE 53

[Close]
BLAST of MELO3C019658T1 vs. NCBI nr
Match: gi|659109397|ref|XP_008454696.1| (PREDICTED: uncharacterized protein LOC103495051 [Cucumis melo])

HSP 1 Score: 59.7 bits (143), Expect = 6.2e-06
Identity = 29/72 (40.28%), Postives = 50/72 (69.44%), Query Frame = 1 

Query: 96  GQDVRAIKQEGSVKDYLQKFEELLPPLPKMAEDVLVGTFTNGLDPVIKTEVFAMRTVNLE 155
           GQ +R IKQEG+V++Y+  F++++ P+  + E V++ TF NGL P +++EVF  R  +L 
Sbjct: 207 GQFLR-IKQEGTVEEYINLFDKMVAPVNDLPERVILDTFMNGLLPWVRSEVFFCRPKSLA 266

Query: 156 DMMDMAPLAEEK 168
           +MM+ A + E +
Sbjct: 267 EMMEAAQMVENR 277

The following BLAST results are available for this feature:
BLAST of MELO3C019658T1 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GC35_CUCME7.8e-2472.50Gypsy/ty3 element polyprotein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GC18_CUCME2.4e-2069.23Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GBA8_CUCME3.4e-1182.22Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of MELO3C019658T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|307136196|gb|ADN34034.1|1.1e-2372.50gypsy/ty3 element polyprotein [Cucumis melo subsp. melo][more]
gi|307136175|gb|ADN34016.1|3.4e-2069.23ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo][more]
gi|307135885|gb|ADN33750.1|4.9e-1182.22ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo][more]
gi|659109397|ref|XP_008454696.1|6.2e-0640.28PREDICTED: uncharacterized protein LOC103495051 [Cucumis melo][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
cellular_component GO:0005634 nucleus
molecular_function GO:0003676 nucleic acid binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C019658MELO3C019658gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C019658T1MELO3C019658T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C019658T1.cds2MELO3C019658T1.cds2CDS
MELO3C019658T1.cds1MELO3C019658T1.cds1CDS