MELO3C019658 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C019658
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Retrotransposon protein
Location	chr11 : 22569391 .. 22570048 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGACCCTCAGAGGCAAGAAGAGGTTCGGAACTGACAGGGATGAGCAAAGGGAAAAAAGGAAACTGAGAGCGGAAGATACCATTGAAGAAAAAACAGACGGGAAGGAGAGACATCGCCGAGCGCAGAAACAGGGGCAGGGCAAGACCGGATTAAGTTTAAGAAGTTGGAGATGCCGGTATTCAATAAAGAAGACCCGGATGGCTGGTTTTATAGGGCCAGCATTATTTCCACTTACACCTTCTGAAAGAGCAAGAGAAGCTGAAGAGTGCAATGGTGAGTCTGAAGGAAAAGGATTGAGCTGATTCCGATGGGCAGAGAACCGGAAGCGTTTTCAATCATGGAAAGAAATGAACGAGAGGATGTATCATCATTTTCGCTATAGGGAACAAGGGACAAGATGTGCGAGCTATAAAACAGGAAGGATCGGTAAAGGATTACCTGCAGAAATTCGAAGAGTTGTTGCCACCATTGCCGAAGATGGCCGAAGACGTTCTGGTGGGGACATTCACGAACGGTCTTGACCCAGTGATTAAGACAGAAGTATTTGCCATGCGGACCGTTAACCTTGAAGACATGATGGATATGGCCCCATTAGCCGAGGAAAAAATTGAAATGGTCCGAAAGACACAGGACCCATATGGAAAACGGCCCTAA

mRNA sequence

ATGACGACCCTCAGAGGCAAGAAGAGGTTCGGAACTGACAGGGATGAGCAAAGGGAAAAAAGGAAACTGAGAGCGGAAGATACCATTGAAGAAAAAACAGACGGGAAGGAGAGACATCGCCGAGCGCAGAAACAGGGGCAGGGCAAGACCGGATTAAGTTTAAGAAGTTGGAGATGCCGGTATTCAATAAAGAAGACCCGGATGGCTGGTTTTATAGGGCCAGCATTATTTCCACTTACACCTTCTGAAAGAGCAAGAGAAGCTGAAGAGTGCAATGGGAACAAGGGACAAGATGTGCGAGCTATAAAACAGGAAGGATCGGTAAAGGATTACCTGCAGAAATTCGAAGAGTTGTTGCCACCATTGCCGAAGATGGCCGAAGACGTTCTGGTGGGGACATTCACGAACGGTCTTGACCCAGTGATTAAGACAGAAGTATTTGCCATGCGGACCGTTAACCTTGAAGACATGATGGATATGGCCCCATTAGCCGAGGAAAAAATTGAAATGGTCCGAAAGACACAGGACCCATATGGAAAACGGCCCTAA

Coding sequence (CDS)

ATGACGACCCTCAGAGGCAAGAAGAGGTTCGGAACTGACAGGGATGAGCAAAGGGAAAAAAGGAAACTGAGAGCGGAAGATACCATTGAAGAAAAAACAGACGGGAAGGAGAGACATCGCCGAGCGCAGAAACAGGGGCAGGGCAAGACCGGATTAAGTTTAAGAAGTTGGAGATGCCGGTATTCAATAAAGAAGACCCGGATGGCTGGTTTTATAGGGCCAGCATTATTTCCACTTACACCTTCTGAAAGAGCAAGAGAAGCTGAAGAGTGCAATGGGAACAAGGGACAAGATGTGCGAGCTATAAAACAGGAAGGATCGGTAAAGGATTACCTGCAGAAATTCGAAGAGTTGTTGCCACCATTGCCGAAGATGGCCGAAGACGTTCTGGTGGGGACATTCACGAACGGTCTTGACCCAGTGATTAAGACAGAAGTATTTGCCATGCGGACCGTTAACCTTGAAGACATGATGGATATGGCCCCATTAGCCGAGGAAAAAATTGAAATGGTCCGAAAGACACAGGACCCATATGGAAAACGGCCCTAA

Protein sequence

MTTLRGKKRFGTDRDEQREKRKLRAEDTIEEKTDGKERHRRAQKQGQGKTGLSLRSWRCRYSIKKTRMAGFIGPALFPLTPSERAREAEECNGNKGQDVRAIKQEGSVKDYLQKFEELLPPLPKMAEDVLVGTFTNGLDPVIKTEVFAMRTVNLEDMMDMAPLAEEKIEMVRKTQDPYGKRP*

Homology

[Close]

BLAST of MELO3C019658 vs. TrEMBL
Match: E5GC35_CUCME (Gypsy/ty3 element polyprotein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 7.8e-24
Identity = 58/80 (72.50%), Postives = 67/80 (83.75%), Query Frame = 1


Query: 101 AIKQEGSVKDYLQKFEELLPPLPKMAEDVLVGTFTNGLDPVIKTEVFAMRTVNLEDMMDM 160
           AIK EGSV +YLQ+FEEL  PLP+MAEDVLVGTFT GLDPVI+TEVFAMR V LEDM+D+
Sbjct: 183 AIKHEGSVGEYLQRFEELSTPLPEMAEDVLVGTFTKGLDPVIRTEVFAMRVVGLEDMVDV 242

Query: 161 APLAEEKIEMVRKTQDPYGK 181
           A LAEEK+E+ R +  PY K
Sbjct: 243 ARLAEEKLEIARASHSPYAK 262

[Close]

BLAST of MELO3C019658 vs. TrEMBL
Match: E5GC18_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.4e-20
Identity = 54/78 (69.23%), Postives = 62/78 (79.49%), Query Frame = 1


Query: 101 AIKQEGSVKDYLQKFEELLPPLPKMAEDVLVGTFTNGLDPVIKTEVFAMRTVNLEDMMDM 160
           AIKQEGSV +YLQKFEEL  PLP+MAE+VL GTFTNGLDP I+ EVFAMR V LED+M+ 
Sbjct: 155 AIKQEGSVSEYLQKFEELSAPLPEMAEEVLEGTFTNGLDPRIRKEVFAMRVVGLEDLMEA 214

Query: 161 APLAEEKIEMVRKTQDPY 179
           A LAEEK E+ +    PY
Sbjct: 215 AQLAEEKAEVTKGGPYPY 232

[Close]

BLAST of MELO3C019658 vs. TrEMBL
Match: E5GBA8_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.4e-11
Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = 1


Query: 101 AIKQEGSVKDYLQKFEELLPPLPKMAEDVLVGTFTNGLDPVIKTE 146
           AIKQEG+V DYLQKFEEL  PLP+M EDVLVGTF+NGLD VIKTE
Sbjct: 9   AIKQEGTVNDYLQKFEELSAPLPEMVEDVLVGTFSNGLDTVIKTE 53

[Close]

BLAST of MELO3C019658 vs. NCBI nr
Match: gi|307136196|gb|ADN34034.1| (gypsy/ty3 element polyprotein [Cucumis melo subsp. melo])

HSP 1 Score: 118.6 bits (296), Expect = 1.1e-23
Identity = 58/80 (72.50%), Postives = 67/80 (83.75%), Query Frame = 1


Query: 101 AIKQEGSVKDYLQKFEELLPPLPKMAEDVLVGTFTNGLDPVIKTEVFAMRTVNLEDMMDM 160
           AIK EGSV +YLQ+FEEL  PLP+MAEDVLVGTFT GLDPVI+TEVFAMR V LEDM+D+
Sbjct: 183 AIKHEGSVGEYLQRFEELSTPLPEMAEDVLVGTFTKGLDPVIRTEVFAMRVVGLEDMVDV 242

Query: 161 APLAEEKIEMVRKTQDPYGK 181
           A LAEEK+E+ R +  PY K
Sbjct: 243 ARLAEEKLEIARASHSPYAK 262

[Close]

BLAST of MELO3C019658 vs. NCBI nr
Match: gi|307136175|gb|ADN34016.1| (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 107.1 bits (266), Expect = 3.4e-20
Identity = 54/78 (69.23%), Postives = 62/78 (79.49%), Query Frame = 1


Query: 101 AIKQEGSVKDYLQKFEELLPPLPKMAEDVLVGTFTNGLDPVIKTEVFAMRTVNLEDMMDM 160
           AIKQEGSV +YLQKFEEL  PLP+MAE+VL GTFTNGLDP I+ EVFAMR V LED+M+ 
Sbjct: 155 AIKQEGSVSEYLQKFEELSAPLPEMAEEVLEGTFTNGLDPRIRKEVFAMRVVGLEDLMEA 214

Query: 161 APLAEEKIEMVRKTQDPY 179
           A LAEEK E+ +    PY
Sbjct: 215 AQLAEEKAEVTKGGPYPY 232

[Close]

BLAST of MELO3C019658 vs. NCBI nr
Match: gi|307135885|gb|ADN33750.1| (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 76.6 bits (187), Expect = 4.9e-11
Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = 1


Query: 101 AIKQEGSVKDYLQKFEELLPPLPKMAEDVLVGTFTNGLDPVIKTE 146
           AIKQEG+V DYLQKFEEL  PLP+M EDVLVGTF+NGLD VIKTE
Sbjct: 9   AIKQEGTVNDYLQKFEELSAPLPEMVEDVLVGTFSNGLDTVIKTE 53

[Close]

BLAST of MELO3C019658 vs. NCBI nr
Match: gi|659109397|ref|XP_008454696.1| (PREDICTED: uncharacterized protein LOC103495051 [Cucumis melo])

HSP 1 Score: 59.7 bits (143), Expect = 6.2e-06
Identity = 29/72 (40.28%), Postives = 50/72 (69.44%), Query Frame = 1


Query: 96  GQDVRAIKQEGSVKDYLQKFEELLPPLPKMAEDVLVGTFTNGLDPVIKTEVFAMRTVNLE 155
           GQ +R IKQEG+V++Y+  F++++ P+  + E V++ TF NGL P +++EVF  R  +L 
Sbjct: 207 GQFLR-IKQEGTVEEYINLFDKMVAPVNDLPERVILDTFMNGLLPWVRSEVFFCRPKSLA 266

Query: 156 DMMDMAPLAEEK 168
           +MM+ A + E +
Sbjct: 267 EMMEAAQMVENR 277

The following BLAST results are available for this feature:

BLAST of MELO3C019658 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GC35_CUCME	7.8e-24	72.50	Gypsy/ty3 element polyprotein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GC18_CUCME	2.4e-20	69.23	Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GBA8_CUCME	3.4e-11	82.22	Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]

BLAST of MELO3C019658 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307136196\|gb\|ADN34034.1\|	1.1e-23	72.50	gypsy/ty3 element polyprotein [Cucumis melo subsp. melo]	[more]
gi\|307136175\|gb\|ADN34016.1\|	3.4e-20	69.23	ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo]	[more]
gi\|307135885\|gb\|ADN33750.1\|	4.9e-11	82.22	ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo]	[more]
gi\|659109397\|ref\|XP_008454696.1\|	6.2e-06	40.28	PREDICTED: uncharacterized protein LOC103495051 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C019658T1	MELO3C019658T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C019658	Cucumber (Gy14) v1	cgymeB180
MELO3C019658	Cucumber (Gy14) v1	cgymeB404
MELO3C019658	Cucurbita maxima (Rimu)	cmameB086
MELO3C019658	Cucurbita maxima (Rimu)	cmameB452
MELO3C019658	Cucurbita maxima (Rimu)	cmameB501
MELO3C019658	Cucurbita maxima (Rimu)	cmameB536
MELO3C019658	Cucurbita moschata (Rifu)	cmomeB078
MELO3C019658	Cucurbita moschata (Rifu)	cmomeB444
MELO3C019658	Cucurbita moschata (Rifu)	cmomeB494
MELO3C019658	Cucurbita moschata (Rifu)	cmomeB526
MELO3C019658	Cucurbita moschata (Rifu)	cmomeB548
MELO3C019658	Wild cucumber (PI 183967)	cpimeB420
MELO3C019658	Wild cucumber (PI 183967)	cpimeB523
MELO3C019658	Cucumber (Chinese Long) v2	cumeB443
MELO3C019658	Cucumber (Chinese Long) v2	cumeB512
MELO3C019658	Watermelon (Charleston Gray)	mewcgB077
MELO3C019658	Watermelon (Charleston Gray)	mewcgB107
MELO3C019658	Watermelon (97103) v1	mewmB086
MELO3C019658	Watermelon (97103) v1	mewmB121
MELO3C019658	Cucurbita pepo (Zucchini)	cpemeB211
MELO3C019658	Cucurbita pepo (Zucchini)	cpemeB247
MELO3C019658	Cucurbita pepo (Zucchini)	cpemeB598
MELO3C019658	Cucurbita pepo (Zucchini)	cpemeB669
MELO3C019658	Bottle gourd (USVL1VR-Ls)	lsimeB043
MELO3C019658	Bottle gourd (USVL1VR-Ls)	lsimeB085
MELO3C019658	Cucumber (Gy14) v2	cgybmeB368
MELO3C019658	Cucumber (Gy14) v2	cgybmeB455
MELO3C019658	Silver-seed gourd	carmeB0028
MELO3C019658	Silver-seed gourd	carmeB0029
MELO3C019658	Silver-seed gourd	carmeB0339
MELO3C019658	Silver-seed gourd	carmeB0391
MELO3C019658	Silver-seed gourd	carmeB0536
MELO3C019658	Cucumber (Chinese Long) v3	cucmeB432
MELO3C019658	Cucumber (Chinese Long) v3	cucmeB535
MELO3C019658	Watermelon (97103) v2	mewmbB131
MELO3C019658	Watermelon (97103) v2	mewmbB109
MELO3C019658	Wax gourd	mewgoB108
MELO3C019658	Wax gourd	mewgoB113
MELO3C019658	Melon (DHL92) v3.5.1	memeB040