MELO3C019538T1 (mRNA) Melon (DHL92) v3.5.1

NameMELO3C019538T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPutative cyclin-A3-1
Locationchr6 : 11558195 .. 11558632 (+)
Sequence length438
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCATAAAAGAATCGAAGAGAAGTTGGAAGAGTTCGACCAAGAGATCGCGGAAATACAATTAGAGTTTCATAAATTACCAACGATTGAAGAGAAGTTGCTATCAATGATGAAAAGTATTGAAAGGTTGGAAATCCAGGGGAACAAACAACAACAATTGTTGTTGAAGTATGTCGAAGGAATAATGAAGAAAAGATCGACGTTACTTAGAGGAATGGAAGAGTCATTGAGCAAGGAACAATCGATTGAGAGGATTGTCAAAGGTGGAGGAGCAATGATGAAAGGAATCAAGATAGATGAAAAGACGACAACAGTTGAAGAATACAAGAATTCGAATGATCTTATTAAGATTAAGGTCGGCATTGATTCATATTTGTGTTTGTTTGGAGCAGGTCAGTATCTTCAGGTCCATAAATTAACGGATTTTGAGAAGTAG

mRNA sequence

ATGGAGCATAAAAGAATCGAAGAGAAGTTGGAAGAGTTCGACCAAGAGATCGCGGAAATACAATTAGAGTTTCATAAATTACCAACGATTGAAGAGAAGTTGCTATCAATGATGAAAAGTATTGAAAGGTTGGAAATCCAGGGGAACAAACAACAACAATTGTTGTTGAAGTATGTCGAAGGAATAATGAAGAAAAGATCGACGTTACTTAGAGGAATGGAAGAGTCATTGAGCAAGGAACAATCGATTGAGAGGATTGTCAAAGGTGGAGGAGCAATGATGAAAGGAATCAAGATAGATGAAAAGACGACAACAGTTGAAGAATACAAGAATTCGAATGATCTTATTAAGATTAAGGTCGGCATTGATTCATATTTGTGTTTGTTTGGAGCAGGTCAGTATCTTCAGGTCCATAAATTAACGGATTTTGAGAAGTAG

Coding sequence (CDS)

ATGGAGCATAAAAGAATCGAAGAGAAGTTGGAAGAGTTCGACCAAGAGATCGCGGAAATACAATTAGAGTTTCATAAATTACCAACGATTGAAGAGAAGTTGCTATCAATGATGAAAAGTATTGAAAGGTTGGAAATCCAGGGGAACAAACAACAACAATTGTTGTTGAAGTATGTCGAAGGAATAATGAAGAAAAGATCGACGTTACTTAGAGGAATGGAAGAGTCATTGAGCAAGGAACAATCGATTGAGAGGATTGTCAAAGGTGGAGGAGCAATGATGAAAGGAATCAAGATAGATGAAAAGACGACAACAGTTGAAGAATACAAGAATTCGAATGATCTTATTAAGATTAAGGTCGGCATTGATTCATATTTGTGTTTGTTTGGAGCAGGTCAGTATCTTCAGGTCCATAAATTAACGGATTTTGAGAAGTAG

Protein sequence

MEHKRIEEKLEEFDQEIAEIQLEFHKLPTIEEKLLSMMKSIERLEIQGNKQQQLLLKYVEGIMKKRSTLLRGMEESLSKEQSIERIVKGGGAMMKGIKIDEKTTTVEEYKNSNDLIKIKVGIDSYLCLFGAGQYLQVHKLTDFEK*
BLAST of MELO3C019538T1 vs. NCBI nr
Match: gi|659134102|ref|XP_008467029.1| (PREDICTED: uncharacterized protein LOC103504456, partial [Cucumis melo])

HSP 1 Score: 85.1 bits (209), Expect = 1.1e-13
Identity = 53/152 (34.87%), Postives = 81/152 (53.29%), Query Frame = 1

Query: 1   MEHKRIEEKLEEFDQEIAEIQLEFHKLPTIEEKLLSMMKSIERLEIQGNKQQQLLLKYVE 60
           M   RIEE++E F+QE+A I+ E  K+P IE  L+ + +++E + +Q  KQQQ +L Y+E
Sbjct: 1   MVQTRIEERMESFEQEVAGIKKELAKMPVIESTLIELTRNMEMMRLQSEKQQQAILSYME 60

Query: 61  GIMKKRSTLLRGMEESLSKEQSIERIVKGGGAMMKGIKIDEKTTTVEEYKNSNDLIKIK- 120
              K+RS     M ES ++     +      +  + ++ +  T   E  +NSND  K K 
Sbjct: 61  MNAKERSMAGERMNESDTQNSPTVKSKNDKASSSRDVE-EINTKKNEPDENSNDRSKFKK 120

Query: 121 ------VGIDSYLCLFGAGQYLQVHKLTDFEK 146
                  G D    LF A +Y Q+HKLT+ EK
Sbjct: 121 VEMPVFTGEDPESWLFRAERYFQIHKLTESEK 151

BLAST of MELO3C019538T1 vs. NCBI nr
Match: gi|659109397|ref|XP_008454696.1| (PREDICTED: uncharacterized protein LOC103495051 [Cucumis melo])

HSP 1 Score: 82.4 bits (202), Expect = 7.1e-13
Identity = 59/158 (37.34%), Postives = 79/158 (50.00%), Query Frame = 1

Query: 1   MEHKRIEEKLEEFDQEIAEIQLEFHKLPTIEEKLLSMMKSIERLEIQGNKQQQLLLKYVE 60
           M   RIEE+LE  DQEIA ++ E  K+P IE  L  + KS+E + +Q  KQQQLL   +E
Sbjct: 1   MVQTRIEERLECIDQEIAGMKKELSKVPAIEMSLSEIAKSLELMRLQSEKQQQLLFTIIE 60

Query: 61  GIMKKRSTLLRGMEESLSKE----------QSIERIVKGG---GAMMKGIKIDEKTTTVE 120
              K+RST+ R   ES +KE           S  + +  G   GA     +ID      +
Sbjct: 61  TNSKERSTMSRLETESPAKEFEKMKGKEDDASSSKAIDSGRNFGADRNDRRIDGDDGVSD 120

Query: 121 EYKNSNDLIKIKVGIDSYLCLFGAGQYLQVHKLTDFEK 146
             K     + +  G D    LF A +Y Q+HKLTD EK
Sbjct: 121 RNKFKKIEMPVFTGEDPDSWLFRAERYFQIHKLTDSEK 158

BLAST of MELO3C019538T1 vs. NCBI nr
Match: gi|659119521|ref|XP_008459701.1| (PREDICTED: uncharacterized protein LOC103498741 [Cucumis melo])

HSP 1 Score: 72.8 bits (177), Expect = 5.6e-10
Identity = 51/158 (32.28%), Postives = 79/158 (50.00%), Query Frame = 1

Query: 1   MEHKRIEEKLEEFDQEIAEIQLEFHKLPTIEEKLLSMMKSIERLEIQGNKQQQLLLKYVE 60
           M   RIEE+LE  DQEIA ++ E  K+P IE  L  + KS++ + +Q  KQQQLL   +E
Sbjct: 1   MVQTRIEERLECIDQEIAGMKKELSKVPVIEVSLNEIAKSVDLMRLQSEKQQQLLFTIIE 60

Query: 61  GIMKKRSTLLRGMEESLSKEQSIERIVKGGGAMMKGIKID---------EKTTTVEEYKN 120
              K+RS +     E   KE    +  +   +  + I+ D          +  + + + +
Sbjct: 61  TSSKERSMMSGQATEPTVKEFEKAKGKESDASSSRMIESDRNFRADGSERRNDSDDSFPD 120

Query: 121 SNDLIKIKV----GIDSYLCLFGAGQYLQVHKLTDFEK 146
            N   KI++    G D    LF A +Y Q+H+LT+ EK
Sbjct: 121 RNKFKKIEMPIFTGEDPDSWLFRAERYFQIHRLTESEK 158

BLAST of MELO3C019538T1 vs. NCBI nr
Match: gi|659118578|ref|XP_008459193.1| (PREDICTED: uncharacterized protein LOC103498388 [Cucumis melo])

HSP 1 Score: 63.9 bits (154), Expect = 2.6e-07
Identity = 47/146 (32.19%), Postives = 75/146 (51.37%), Query Frame = 1

Query: 4   KRIEEKLEEFDQEIAEIQLEFHKLPTIEEKLLSMMKSIERLEIQGNKQQQLLLKYVEGIM 63
           +++EE+++  +QE+        +LP I+E L  + KSI+ +  Q NKQQQ++LKY+EGI+
Sbjct: 3   RKMEERMDLVEQEL-------QRLPIIDENLPLLTKSIKEMNAQINKQQQVILKYIEGII 62

Query: 64  KKRSTLLRGMEESLSKEQSIERIVKGGGAMMKGIKIDEKTTTVEEYKNSNDLIKIKV--- 123
           +  S+  +  E S S         K G  ++  +  D KT T  E  N  D  K K    
Sbjct: 63  RDNSSAGKTTEGSTSH-------TKSGDTILSEVVDDSKTNTRHEDINPMDRSKFKKVEM 122

Query: 124 ----GIDSYLCLFGAGQYLQVH-KLT 142
               G +    LF A ++ ++H KLT
Sbjct: 123 PVFNGTNPDPWLFRADRFFKIHEKLT 134

BLAST of MELO3C019538T1 vs. NCBI nr
Match: gi|659131700|ref|XP_008465811.1| (PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X4 [Cucumis melo])

HSP 1 Score: 60.1 bits (144), Expect = 3.8e-06
Identity = 31/78 (39.74%), Postives = 49/78 (62.82%), Query Frame = 1

Query: 5  RIEEKLEEFDQEIAEIQLEFHKLPTIEEKLLSMMKSIERLEIQGNKQQQLLLKYVEGIMK 64
          RIEE++E FD EIA ++ E  K+  I   L  +MK++E +  Q  KQQQ+LL ++E   K
Sbjct: 5  RIEERMEVFDLEIAGLKKELSKMLVINASLSEIMKNLELMRFQTEKQQQVLLMFMESNAK 64

Query: 65 KRSTLLRGMEESLSKEQS 83
          +RS +   + ES  +++S
Sbjct: 65 ERSMMSERLTESAVRDKS 82

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
gi|659134102|ref|XP_008467029.1|1.1e-1334.87PREDICTED: uncharacterized protein LOC103504456, partial [Cucumis melo][more]
gi|659109397|ref|XP_008454696.1|7.1e-1337.34PREDICTED: uncharacterized protein LOC103495051 [Cucumis melo][more]
gi|659119521|ref|XP_008459701.1|5.6e-1032.28PREDICTED: uncharacterized protein LOC103498741 [Cucumis melo][more]
gi|659118578|ref|XP_008459193.1|2.6e-0732.19PREDICTED: uncharacterized protein LOC103498388 [Cucumis melo][more]
gi|659131700|ref|XP_008465811.1|3.8e-0639.74PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X4 [Cucumis melo][more]
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C019538MELO3C019538gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C019538T1MELO3C019538T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C019538T1.cds1MELO3C019538T1.cds1CDS


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 3..23
scor