MELO3C019538 (gene) Melon (DHL92) v3.5.1

NameMELO3C019538
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPutative cyclin-A3-1
Locationchr6 : 11558195 .. 11558632 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCATAAAAGAATCGAAGAGAAGTTGGAAGAGTTCGACCAAGAGATCGCGGAAATACAATTAGAGTTTCATAAATTACCAACGATTGAAGAGAAGTTGCTATCAATGATGAAAAGTATTGAAAGGTTGGAAATCCAGGGGAACAAACAACAACAATTGTTGTTGAAGTATGTCGAAGGAATAATGAAGAAAAGATCGACGTTACTTAGAGGAATGGAAGAGTCATTGAGCAAGGAACAATCGATTGAGAGGATTGTCAAAGGTGGAGGAGCAATGATGAAAGGAATCAAGATAGATGAAAAGACGACAACAGTTGAAGAATACAAGAATTCGAATGATCTTATTAAGATTAAGGTCGGCATTGATTCATATTTGTGTTTGTTTGGAGCAGGTCAGTATCTTCAGGTCCATAAATTAACGGATTTTGAGAAGTAG

mRNA sequence

ATGGAGCATAAAAGAATCGAAGAGAAGTTGGAAGAGTTCGACCAAGAGATCGCGGAAATACAATTAGAGTTTCATAAATTACCAACGATTGAAGAGAAGTTGCTATCAATGATGAAAAGTATTGAAAGGTTGGAAATCCAGGGGAACAAACAACAACAATTGTTGTTGAAGTATGTCGAAGGAATAATGAAGAAAAGATCGACGTTACTTAGAGGAATGGAAGAGTCATTGAGCAAGGAACAATCGATTGAGAGGATTGTCAAAGGTGGAGGAGCAATGATGAAAGGAATCAAGATAGATGAAAAGACGACAACAGTTGAAGAATACAAGAATTCGAATGATCTTATTAAGATTAAGGTCGGCATTGATTCATATTTGTGTTTGTTTGGAGCAGGTCAGTATCTTCAGGTCCATAAATTAACGGATTTTGAGAAGTAG

Coding sequence (CDS)

ATGGAGCATAAAAGAATCGAAGAGAAGTTGGAAGAGTTCGACCAAGAGATCGCGGAAATACAATTAGAGTTTCATAAATTACCAACGATTGAAGAGAAGTTGCTATCAATGATGAAAAGTATTGAAAGGTTGGAAATCCAGGGGAACAAACAACAACAATTGTTGTTGAAGTATGTCGAAGGAATAATGAAGAAAAGATCGACGTTACTTAGAGGAATGGAAGAGTCATTGAGCAAGGAACAATCGATTGAGAGGATTGTCAAAGGTGGAGGAGCAATGATGAAAGGAATCAAGATAGATGAAAAGACGACAACAGTTGAAGAATACAAGAATTCGAATGATCTTATTAAGATTAAGGTCGGCATTGATTCATATTTGTGTTTGTTTGGAGCAGGTCAGTATCTTCAGGTCCATAAATTAACGGATTTTGAGAAGTAG

Protein sequence

MEHKRIEEKLEEFDQEIAEIQLEFHKLPTIEEKLLSMMKSIERLEIQGNKQQQLLLKYVEGIMKKRSTLLRGMEESLSKEQSIERIVKGGGAMMKGIKIDEKTTTVEEYKNSNDLIKIKVGIDSYLCLFGAGQYLQVHKLTDFEK*
BLAST of MELO3C019538 vs. NCBI nr
Match: gi|659134102|ref|XP_008467029.1| (PREDICTED: uncharacterized protein LOC103504456, partial [Cucumis melo])

HSP 1 Score: 85.1 bits (209), Expect = 1.1e-13
Identity = 53/152 (34.87%), Postives = 81/152 (53.29%), Query Frame = 1

Query: 1   MEHKRIEEKLEEFDQEIAEIQLEFHKLPTIEEKLLSMMKSIERLEIQGNKQQQLLLKYVE 60
           M   RIEE++E F+QE+A I+ E  K+P IE  L+ + +++E + +Q  KQQQ +L Y+E
Sbjct: 1   MVQTRIEERMESFEQEVAGIKKELAKMPVIESTLIELTRNMEMMRLQSEKQQQAILSYME 60

Query: 61  GIMKKRSTLLRGMEESLSKEQSIERIVKGGGAMMKGIKIDEKTTTVEEYKNSNDLIKIK- 120
              K+RS     M ES ++     +      +  + ++ +  T   E  +NSND  K K 
Sbjct: 61  MNAKERSMAGERMNESDTQNSPTVKSKNDKASSSRDVE-EINTKKNEPDENSNDRSKFKK 120

Query: 121 ------VGIDSYLCLFGAGQYLQVHKLTDFEK 146
                  G D    LF A +Y Q+HKLT+ EK
Sbjct: 121 VEMPVFTGEDPESWLFRAERYFQIHKLTESEK 151

BLAST of MELO3C019538 vs. NCBI nr
Match: gi|659109397|ref|XP_008454696.1| (PREDICTED: uncharacterized protein LOC103495051 [Cucumis melo])

HSP 1 Score: 82.4 bits (202), Expect = 7.1e-13
Identity = 59/158 (37.34%), Postives = 79/158 (50.00%), Query Frame = 1

Query: 1   MEHKRIEEKLEEFDQEIAEIQLEFHKLPTIEEKLLSMMKSIERLEIQGNKQQQLLLKYVE 60
           M   RIEE+LE  DQEIA ++ E  K+P IE  L  + KS+E + +Q  KQQQLL   +E
Sbjct: 1   MVQTRIEERLECIDQEIAGMKKELSKVPAIEMSLSEIAKSLELMRLQSEKQQQLLFTIIE 60

Query: 61  GIMKKRSTLLRGMEESLSKE----------QSIERIVKGG---GAMMKGIKIDEKTTTVE 120
              K+RST+ R   ES +KE           S  + +  G   GA     +ID      +
Sbjct: 61  TNSKERSTMSRLETESPAKEFEKMKGKEDDASSSKAIDSGRNFGADRNDRRIDGDDGVSD 120

Query: 121 EYKNSNDLIKIKVGIDSYLCLFGAGQYLQVHKLTDFEK 146
             K     + +  G D    LF A +Y Q+HKLTD EK
Sbjct: 121 RNKFKKIEMPVFTGEDPDSWLFRAERYFQIHKLTDSEK 158

BLAST of MELO3C019538 vs. NCBI nr
Match: gi|659119521|ref|XP_008459701.1| (PREDICTED: uncharacterized protein LOC103498741 [Cucumis melo])

HSP 1 Score: 72.8 bits (177), Expect = 5.6e-10
Identity = 51/158 (32.28%), Postives = 79/158 (50.00%), Query Frame = 1

Query: 1   MEHKRIEEKLEEFDQEIAEIQLEFHKLPTIEEKLLSMMKSIERLEIQGNKQQQLLLKYVE 60
           M   RIEE+LE  DQEIA ++ E  K+P IE  L  + KS++ + +Q  KQQQLL   +E
Sbjct: 1   MVQTRIEERLECIDQEIAGMKKELSKVPVIEVSLNEIAKSVDLMRLQSEKQQQLLFTIIE 60

Query: 61  GIMKKRSTLLRGMEESLSKEQSIERIVKGGGAMMKGIKID---------EKTTTVEEYKN 120
              K+RS +     E   KE    +  +   +  + I+ D          +  + + + +
Sbjct: 61  TSSKERSMMSGQATEPTVKEFEKAKGKESDASSSRMIESDRNFRADGSERRNDSDDSFPD 120

Query: 121 SNDLIKIKV----GIDSYLCLFGAGQYLQVHKLTDFEK 146
            N   KI++    G D    LF A +Y Q+H+LT+ EK
Sbjct: 121 RNKFKKIEMPIFTGEDPDSWLFRAERYFQIHRLTESEK 158

BLAST of MELO3C019538 vs. NCBI nr
Match: gi|659118578|ref|XP_008459193.1| (PREDICTED: uncharacterized protein LOC103498388 [Cucumis melo])

HSP 1 Score: 63.9 bits (154), Expect = 2.6e-07
Identity = 47/146 (32.19%), Postives = 75/146 (51.37%), Query Frame = 1

Query: 4   KRIEEKLEEFDQEIAEIQLEFHKLPTIEEKLLSMMKSIERLEIQGNKQQQLLLKYVEGIM 63
           +++EE+++  +QE+        +LP I+E L  + KSI+ +  Q NKQQQ++LKY+EGI+
Sbjct: 3   RKMEERMDLVEQEL-------QRLPIIDENLPLLTKSIKEMNAQINKQQQVILKYIEGII 62

Query: 64  KKRSTLLRGMEESLSKEQSIERIVKGGGAMMKGIKIDEKTTTVEEYKNSNDLIKIKV--- 123
           +  S+  +  E S S         K G  ++  +  D KT T  E  N  D  K K    
Sbjct: 63  RDNSSAGKTTEGSTSH-------TKSGDTILSEVVDDSKTNTRHEDINPMDRSKFKKVEM 122

Query: 124 ----GIDSYLCLFGAGQYLQVH-KLT 142
               G +    LF A ++ ++H KLT
Sbjct: 123 PVFNGTNPDPWLFRADRFFKIHEKLT 134

BLAST of MELO3C019538 vs. NCBI nr
Match: gi|659131700|ref|XP_008465811.1| (PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X4 [Cucumis melo])

HSP 1 Score: 60.1 bits (144), Expect = 3.8e-06
Identity = 31/78 (39.74%), Postives = 49/78 (62.82%), Query Frame = 1

Query: 5  RIEEKLEEFDQEIAEIQLEFHKLPTIEEKLLSMMKSIERLEIQGNKQQQLLLKYVEGIMK 64
          RIEE++E FD EIA ++ E  K+  I   L  +MK++E +  Q  KQQQ+LL ++E   K
Sbjct: 5  RIEERMEVFDLEIAGLKKELSKMLVINASLSEIMKNLELMRFQTEKQQQVLLMFMESNAK 64

Query: 65 KRSTLLRGMEESLSKEQS 83
          +RS +   + ES  +++S
Sbjct: 65 ERSMMSERLTESAVRDKS 82

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
gi|659134102|ref|XP_008467029.1|1.1e-1334.87PREDICTED: uncharacterized protein LOC103504456, partial [Cucumis melo][more]
gi|659109397|ref|XP_008454696.1|7.1e-1337.34PREDICTED: uncharacterized protein LOC103495051 [Cucumis melo][more]
gi|659119521|ref|XP_008459701.1|5.6e-1032.28PREDICTED: uncharacterized protein LOC103498741 [Cucumis melo][more]
gi|659118578|ref|XP_008459193.1|2.6e-0732.19PREDICTED: uncharacterized protein LOC103498388 [Cucumis melo][more]
gi|659131700|ref|XP_008465811.1|3.8e-0639.74PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X4 [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C019538T1MELO3C019538T1mRNA


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 3..23
scor

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C019538Cucumber (Gy14) v2cgybmeB210
MELO3C019538Cucumber (Gy14) v2cgybmeB496
MELO3C019538Silver-seed gourdcarmeB0296
MELO3C019538Silver-seed gourdcarmeB0380
MELO3C019538Cucumber (Chinese Long) v3cucmeB247
MELO3C019538Cucumber (Chinese Long) v3cucmeB579
MELO3C019538Watermelon (97103) v2mewmbB432
MELO3C019538Watermelon (97103) v2mewmbB434
MELO3C019538Wax gourdmewgoB530
MELO3C019538Wax gourdmewgoB553
MELO3C019538Melon (DHL92) v3.5.1memeB090
MELO3C019538Cucumber (Gy14) v1cgymeB381
MELO3C019538Cucumber (Gy14) v1cgymeB417
MELO3C019538Cucurbita maxima (Rimu)cmameB140
MELO3C019538Cucurbita maxima (Rimu)cmameB298
MELO3C019538Cucurbita maxima (Rimu)cmameB481
MELO3C019538Cucurbita maxima (Rimu)cmameB691
MELO3C019538Cucurbita moschata (Rifu)cmomeB128
MELO3C019538Cucurbita moschata (Rifu)cmomeB290
MELO3C019538Cucurbita moschata (Rifu)cmomeB473
MELO3C019538Cucurbita moschata (Rifu)cmomeB683
MELO3C019538Wild cucumber (PI 183967)cpimeB241
MELO3C019538Wild cucumber (PI 183967)cpimeB567
MELO3C019538Cucumber (Chinese Long) v2cumeB166
MELO3C019538Cucumber (Chinese Long) v2cumeB511
MELO3C019538Watermelon (Charleston Gray)mewcgB424
MELO3C019538Watermelon (Charleston Gray)mewcgB427
MELO3C019538Watermelon (97103) v1mewmB461
MELO3C019538Watermelon (97103) v1mewmB483
MELO3C019538Cucurbita pepo (Zucchini)cpemeB192
MELO3C019538Cucurbita pepo (Zucchini)cpemeB241
MELO3C019538Cucurbita pepo (Zucchini)cpemeB412
MELO3C019538Bottle gourd (USVL1VR-Ls)lsimeB267
MELO3C019538Bottle gourd (USVL1VR-Ls)lsimeB368