MELO3C019520T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C019520T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic
Location	chr6 : 11232550 .. 11232819 (+)
Sequence length	270

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GATGAGATCTCCAAAACTTGTGCTGATAAAGAGCCATCTCCAAACGATGTTTCGACACAAGCTTTGAGTACACGAGAGAGTAGTGGACGTGTACGTGGAGTTGGCGGGTTTGTCACCCCAAATACTTATTTTTACACTGCAAAACGGAATGAAGAAATTGACAAGCTTCGTGAAGAGAATGAAAAGCTTCGTTTGAGAGTTCAAGAATTAGAGAATATTCACATATCAACACAATCTACACCGACGTCTGCACATGGATCTTGCTCCTGA

mRNA sequence

GATGAGATCTCCAAAACTTGTGCTGATAAAGAGCCATCTCCAAACGATGTTTCGACACAAGCTTTGAGTACACGAGAGAGTAGTGGACGTGTACGTGGAGTTGGCGGGTTTGTCACCCCAAATACTTATTTTTACACTGCAAAACGGAATGAAGAAATTGACAAGCTTCGTGAAGAGAATGAAAAGCTTCGTTTGAGAGTTCAAGAATTAGAGAATATTCACATATCAACACAATCTACACCGACGTCTGCACATGGATCTTGCTCCTGA

Coding sequence (CDS)

GATGAGATCTCCAAAACTTGTGCTGATAAAGAGCCATCTCCAAACGATGTTTCGACACAAGCTTTGAGTACACGAGAGAGTAGTGGACGTGTACGTGGAGTTGGCGGGTTTGTCACCCCAAATACTTATTTTTACACTGCAAAACGGAATGAAGAAATTGACAAGCTTCGTGAAGAGAATGAAAAGCTTCGTTTGAGAGTTCAAGAATTAGAGAATATTCACATATCAACACAATCTACACCGACGTCTGCACATGGATCTTGCTCCTGA

Protein sequence

DEISKTCADKEPSPNDVSTQALSTRESSGRVRGVGGFVTPNTYFYTAKRNEEIDKLREENEKLRLRVQELENIHISTQSTPTSAHGSCS*

Homology

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BLAST of MELO3C019520T1 vs. NCBI nr
Match: gi|778708464|ref|XP_011656204.1| (PREDICTED: uncharacterized protein LOC105435665 [Cucumis sativus])

HSP 1 Score: 118.6 bits (296), Expect = 5.5e-24
Identity = 62/93 (66.67%), Postives = 74/93 (79.57%), Query Frame = 1


Query: 1   DEISKTCADKEPSPNDVSTQALSTRESSGRVRGVGGFVTPNTYFYTAK----RNEEIDKL 60
           D+IS+   DKEPSPND++ QAL T E SGRVRGVGGFVT   YF+T+K    ++E I+KL
Sbjct: 121 DDISRIYVDKEPSPNDLA-QALGTNEHSGRVRGVGGFVTRTAYFHTSKHSKKQSENIEKL 180

Query: 61  REENEKLRLRVQELENIHISTQSTPTSAHGSCS 90
           REENEKL L VQELE+IH++TQSTPT AH SCS
Sbjct: 181 REENEKLCLGVQELESIHLTTQSTPTYAHASCS 212

The following BLAST results are available for this feature:

BLAST of MELO3C019520T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778708464\|ref\|XP_011656204.1\|	5.5e-24	66.67	PREDICTED: uncharacterized protein LOC105435665 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C019520	MELO3C019520	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C019520T1	MELO3C019520T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C019520T1.cds1	MELO3C019520T1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 46..73 scor
None	No IPR available	unknown	SSF75704	Mitotic arrest deficient-like 1, Mad1	coord: 46..72 score: 6.9