MELO3C019520 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C019520
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionNAD(P)H-quinone oxidoreductase subunit K, chloroplastic
Locationchr6 : 11232550 .. 11232819 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GATGAGATCTCCAAAACTTGTGCTGATAAAGAGCCATCTCCAAACGATGTTTCGACACAAGCTTTGAGTACACGAGAGAGTAGTGGACGTGTACGTGGAGTTGGCGGGTTTGTCACCCCAAATACTTATTTTTACACTGCAAAACGGAATGAAGAAATTGACAAGCTTCGTGAAGAGAATGAAAAGCTTCGTTTGAGAGTTCAAGAATTAGAGAATATTCACATATCAACACAATCTACACCGACGTCTGCACATGGATCTTGCTCCTGA

mRNA sequence

GATGAGATCTCCAAAACTTGTGCTGATAAAGAGCCATCTCCAAACGATGTTTCGACACAAGCTTTGAGTACACGAGAGAGTAGTGGACGTGTACGTGGAGTTGGCGGGTTTGTCACCCCAAATACTTATTTTTACACTGCAAAACGGAATGAAGAAATTGACAAGCTTCGTGAAGAGAATGAAAAGCTTCGTTTGAGAGTTCAAGAATTAGAGAATATTCACATATCAACACAATCTACACCGACGTCTGCACATGGATCTTGCTCCTGA

Coding sequence (CDS)

GATGAGATCTCCAAAACTTGTGCTGATAAAGAGCCATCTCCAAACGATGTTTCGACACAAGCTTTGAGTACACGAGAGAGTAGTGGACGTGTACGTGGAGTTGGCGGGTTTGTCACCCCAAATACTTATTTTTACACTGCAAAACGGAATGAAGAAATTGACAAGCTTCGTGAAGAGAATGAAAAGCTTCGTTTGAGAGTTCAAGAATTAGAGAATATTCACATATCAACACAATCTACACCGACGTCTGCACATGGATCTTGCTCCTGA

Protein sequence

DEISKTCADKEPSPNDVSTQALSTRESSGRVRGVGGFVTPNTYFYTAKRNEEIDKLREENEKLRLRVQELENIHISTQSTPTSAHGSCS*
Homology
[Close]
BLAST of MELO3C019520 vs. NCBI nr
Match: gi|778708464|ref|XP_011656204.1| (PREDICTED: uncharacterized protein LOC105435665 [Cucumis sativus])

HSP 1 Score: 118.6 bits (296), Expect = 5.5e-24
Identity = 62/93 (66.67%), Postives = 74/93 (79.57%), Query Frame = 1 

Query: 1   DEISKTCADKEPSPNDVSTQALSTRESSGRVRGVGGFVTPNTYFYTAK----RNEEIDKL 60
           D+IS+   DKEPSPND++ QAL T E SGRVRGVGGFVT   YF+T+K    ++E I+KL
Sbjct: 121 DDISRIYVDKEPSPNDLA-QALGTNEHSGRVRGVGGFVTRTAYFHTSKHSKKQSENIEKL 180

Query: 61  REENEKLRLRVQELENIHISTQSTPTSAHGSCS 90
           REENEKL L VQELE+IH++TQSTPT AH SCS
Sbjct: 181 REENEKLCLGVQELESIHLTTQSTPTYAHASCS 212

The following BLAST results are available for this feature:
BLAST of MELO3C019520 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778708464|ref|XP_011656204.1|5.5e-2466.67PREDICTED: uncharacterized protein LOC105435665 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C019520T1MELO3C019520T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 46..73
scor
NoneNo IPR availableunknownSSF75704Mitotic arrest deficient-like 1, Mad1coord: 46..72
score: 6.9

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C019520Wax gourdmewgoB530
MELO3C019520Wax gourdmewgoB553
MELO3C019520Melon (DHL92) v3.5.1memeB090
MELO3C019520Cucumber (Gy14) v1cgymeB381
MELO3C019520Cucumber (Gy14) v1cgymeB417
MELO3C019520Cucurbita maxima (Rimu)cmameB140
MELO3C019520Cucurbita maxima (Rimu)cmameB298
MELO3C019520Cucurbita maxima (Rimu)cmameB481
MELO3C019520Cucurbita maxima (Rimu)cmameB691
MELO3C019520Cucurbita moschata (Rifu)cmomeB128
MELO3C019520Cucurbita moschata (Rifu)cmomeB290
MELO3C019520Cucurbita moschata (Rifu)cmomeB473
MELO3C019520Cucurbita moschata (Rifu)cmomeB683
MELO3C019520Cucurbita moschata (Rifu)cmomeB682
MELO3C019520Wild cucumber (PI 183967)cpimeB241
MELO3C019520Wild cucumber (PI 183967)cpimeB567
MELO3C019520Cucumber (Chinese Long) v2cumeB166
MELO3C019520Cucumber (Chinese Long) v2cumeB511
MELO3C019520Watermelon (Charleston Gray)mewcgB424
MELO3C019520Watermelon (Charleston Gray)mewcgB427
MELO3C019520Watermelon (97103) v1mewmB461
MELO3C019520Watermelon (97103) v1mewmB483
MELO3C019520Cucurbita pepo (Zucchini)cpemeB192
MELO3C019520Cucurbita pepo (Zucchini)cpemeB241
MELO3C019520Cucurbita pepo (Zucchini)cpemeB411
MELO3C019520Cucurbita pepo (Zucchini)cpemeB412
MELO3C019520Bottle gourd (USVL1VR-Ls)lsimeB267
MELO3C019520Bottle gourd (USVL1VR-Ls)lsimeB368
MELO3C019520Cucumber (Gy14) v2cgybmeB210
MELO3C019520Cucumber (Gy14) v2cgybmeB496
MELO3C019520Silver-seed gourdcarmeB0215
MELO3C019520Silver-seed gourdcarmeB0379
MELO3C019520Silver-seed gourdcarmeB0380
MELO3C019520Cucumber (Chinese Long) v3cucmeB247
MELO3C019520Cucumber (Chinese Long) v3cucmeB579
MELO3C019520Watermelon (97103) v2mewmbB432
MELO3C019520Watermelon (97103) v2mewmbB434