MELO3C019304T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C019304T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Cytosolic Fe-S cluster assembly factor NBP35
Location	chr11 : 11101375 .. 11101761 (-)
Sequence length	255

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAACACCCGGAAAGGTAATTATTAGGCTAAATTGTCTAAAGTAGTTCATGAAGCTCTAGCTTCAAAGTCTACCATGCATGGTGTACGAATGTGAGGTCGTCGTTTCAAAAGCACTCCGCTACGAAGACCGTATTGACTTCCGTCAGAAAAATCTCAGGTACATGCCTCCGAAAGTTATCATCTGCCTAAGCATGAAAAGGTTGCTGATGGAAGTGCTGCAAAAGGTGTTGGAAATGCACCAAGTGTCTCTGAGACTCACATTTCAGACATGGATTCGGATGAGAAAGATGATGTTCCGCTGGCTAGACTATTGAAGAAAGGTTTTGCTTTCAATGTCGCTTCTGCAAAATCTACCGATCTTGTCATATCAGCTCGTTCTTAA

mRNA sequence

ATGGTGAACACCCGGAAAGAAAAATCTCAGGTACATGCCTCCGAAAGTTATCATCTGCCTAAGCATGAAAAGGTTGCTGATGGAAGTGCTGCAAAAGGTGTTGGAAATGCACCAAGTGTCTCTGAGACTCACATTTCAGACATGGATTCGGATGAGAAAGATGATGTTCCGCTGGCTAGACTATTGAAGAAAGGTTTTGCTTTCAATGTCGCTTCTGCAAAATCTACCGATCTTGTCATATCAGCTCGTTCTTAA

Coding sequence (CDS)

ATGGTGAACACCCGGAAAGAAAAATCTCAGGTACATGCCTCCGAAAGTTATCATCTGCCTAAGCATGAAAAGGTTGCTGATGGAAGTGCTGCAAAAGGTGTTGGAAATGCACCAAGTGTCTCTGAGACTCACATTTCAGACATGGATTCGGATGAGAAAGATGATGTTCCGCTGGCTAGACTATTGAAGAAAGGTTTTGCTTTCAATGTCGCTTCTGCAAAATCTACCGATCTTGTCATATCAGCTCGTTCTTAA

Protein sequence

MVNTRKEKSQVHASESYHLPKHEKVADGSAAKGVGNAPSVSETHISDMDSDEKDDVPLARLLKKGFAFNVASAKSTDLVISARS*

Homology

[Close]

BLAST of MELO3C019304T1 vs. NCBI nr
Match: gi|659082042|ref|XP_008441636.1| (PREDICTED: uncharacterized protein LOC103485716 [Cucumis melo])

HSP 1 Score: 103.6 bits (257), Expect = 1.7e-19
Identity = 54/77 (70.13%), Postives = 59/77 (76.62%), Query Frame = 1


Query: 8   KSQVHASESYHLPKHEKVADGSAAKGVGNAPSVSETHISDMDSDEKDDVPLARLLKKGFA 67
           KS +H    YH+ +H+ VA GSAAKGV NAPSVSETHISDMD DE+DDV LARLLKKG A
Sbjct: 52  KSTMHGVRIYHVTEHDDVATGSAAKGVENAPSVSETHISDMDLDEQDDVLLARLLKKGVA 111

Query: 68  FNVASAKSTDLVISARS 85
            NV   KS DLVISA S
Sbjct: 112 SNVVPTKSVDLVISAHS 128

[Close]

BLAST of MELO3C019304T1 vs. NCBI nr
Match: gi|659083317|ref|XP_008442287.1| (PREDICTED: uncharacterized protein LOC103486195 [Cucumis melo])

HSP 1 Score: 94.0 bits (232), Expect = 1.4e-16
Identity = 45/76 (59.21%), Postives = 57/76 (75.00%), Query Frame = 1


Query: 9  SQVHASESYHLPKHEKVADGSAAKGVGNAPSVSETHISDMDSDEKDDVPLARLLKKGFAF 68
          + +H SES+H+P HE++   SA K   NAPSVSETH+S+MD D+ DD+PLARLLKK +A 
Sbjct: 19 TSLHVSESFHVPVHEEIVVKSAVKSAENAPSVSETHVSNMDLDDLDDIPLARLLKKSYAS 78

Query: 69 NVASAKSTDLVISARS 85
           VA AK TD +ISA S
Sbjct: 79 EVALAKPTDPIISAHS 94

[Close]

BLAST of MELO3C019304T1 vs. NCBI nr
Match: gi|659125967|ref|XP_008462943.1| (PREDICTED: uncharacterized protein LOC103501207 [Cucumis melo])

HSP 1 Score: 73.2 bits (178), Expect = 2.5e-10
Identity = 43/77 (55.84%), Postives = 55/77 (71.43%), Query Frame = 1


Query: 8   KSQVHASESYHLPKHEKVADGSAAKGVGNAPSVSETHISDMDSDEKDDVPLARLLKKGFA 67
           K+   +SES H+P HE V   SAA  V  A SVSE +IS+M+S+E+DDVPLA+LLKKGF 
Sbjct: 46  KNLERSSESTHVPDHEDVGAESAATIVETALSVSENNISNMNSNEQDDVPLAKLLKKGFI 105

Query: 68  FNVASAKSTDLVISARS 85
            NVA   +T+ V+S RS
Sbjct: 106 SNVA---TTNSVMSTRS 119

[Close]

BLAST of MELO3C019304T1 vs. NCBI nr
Match: gi|659109747|ref|XP_008454855.1| (PREDICTED: uncharacterized protein LOC103495162 [Cucumis melo])

HSP 1 Score: 61.6 bits (148), Expect = 7.6e-07
Identity = 34/78 (43.59%), Postives = 45/78 (57.69%), Query Frame = 1


Query: 7   EKSQVHASESYHLPKHEKVADGSAAKGVGNAPSVSETHISDMDSDEKDDVPLARLLKKGF 66
           EK+  + S       HE+V  G+  K    AP+ SE H+S+MDSD+ DDVPLARL+KK  
Sbjct: 49  EKAHAYISSGSFELIHEEVVYGNVMKDAETAPAASEAHLSNMDSDDLDDVPLARLVKKVT 108

Query: 67  AFNVASAKSTDLVISARS 85
           A N       D V+S +S
Sbjct: 109 APNAVPKNVNDNVLSDQS 126

The following BLAST results are available for this feature:

BLAST of MELO3C019304T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659082042\|ref\|XP_008441636.1\|	1.7e-19	70.13	PREDICTED: uncharacterized protein LOC103485716 [Cucumis melo]	[more]
gi\|659083317\|ref\|XP_008442287.1\|	1.4e-16	59.21	PREDICTED: uncharacterized protein LOC103486195 [Cucumis melo]	[more]
gi\|659125967\|ref\|XP_008462943.1\|	2.5e-10	55.84	PREDICTED: uncharacterized protein LOC103501207 [Cucumis melo]	[more]
gi\|659109747\|ref\|XP_008454855.1\|	7.6e-07	43.59	PREDICTED: uncharacterized protein LOC103495162 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C019304	MELO3C019304	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C019304T1	MELO3C019304T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C019304T1.cds2	MELO3C019304T1.cds2	CDS
MELO3C019304T1.cds1	MELO3C019304T1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 82..84 scor