MELO3C019304 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C019304
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Cytosolic Fe-S cluster assembly factor NBP35
Location	chr11 : 11101375 .. 11101761 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAACACCCGGAAAGGTAATTATTAGGCTAAATTGTCTAAAGTAGTTCATGAAGCTCTAGCTTCAAAGTCTACCATGCATGGTGTACGAATGTGAGGTCGTCGTTTCAAAAGCACTCCGCTACGAAGACCGTATTGACTTCCGTCAGAAAAATCTCAGGTACATGCCTCCGAAAGTTATCATCTGCCTAAGCATGAAAAGGTTGCTGATGGAAGTGCTGCAAAAGGTGTTGGAAATGCACCAAGTGTCTCTGAGACTCACATTTCAGACATGGATTCGGATGAGAAAGATGATGTTCCGCTGGCTAGACTATTGAAGAAAGGTTTTGCTTTCAATGTCGCTTCTGCAAAATCTACCGATCTTGTCATATCAGCTCGTTCTTAA

mRNA sequence

ATGGTGAACACCCGGAAAGAAAAATCTCAGGTACATGCCTCCGAAAGTTATCATCTGCCTAAGCATGAAAAGGTTGCTGATGGAAGTGCTGCAAAAGGTGTTGGAAATGCACCAAGTGTCTCTGAGACTCACATTTCAGACATGGATTCGGATGAGAAAGATGATGTTCCGCTGGCTAGACTATTGAAGAAAGGTTTTGCTTTCAATGTCGCTTCTGCAAAATCTACCGATCTTGTCATATCAGCTCGTTCTTAA

Coding sequence (CDS)

ATGGTGAACACCCGGAAAGAAAAATCTCAGGTACATGCCTCCGAAAGTTATCATCTGCCTAAGCATGAAAAGGTTGCTGATGGAAGTGCTGCAAAAGGTGTTGGAAATGCACCAAGTGTCTCTGAGACTCACATTTCAGACATGGATTCGGATGAGAAAGATGATGTTCCGCTGGCTAGACTATTGAAGAAAGGTTTTGCTTTCAATGTCGCTTCTGCAAAATCTACCGATCTTGTCATATCAGCTCGTTCTTAA

Protein sequence

MVNTRKEKSQVHASESYHLPKHEKVADGSAAKGVGNAPSVSETHISDMDSDEKDDVPLARLLKKGFAFNVASAKSTDLVISARS*

Homology

[Close]

BLAST of MELO3C019304 vs. NCBI nr
Match: gi|659082042|ref|XP_008441636.1| (PREDICTED: uncharacterized protein LOC103485716 [Cucumis melo])

HSP 1 Score: 103.6 bits (257), Expect = 1.7e-19
Identity = 54/77 (70.13%), Postives = 59/77 (76.62%), Query Frame = 1


Query: 8   KSQVHASESYHLPKHEKVADGSAAKGVGNAPSVSETHISDMDSDEKDDVPLARLLKKGFA 67
           KS +H    YH+ +H+ VA GSAAKGV NAPSVSETHISDMD DE+DDV LARLLKKG A
Sbjct: 52  KSTMHGVRIYHVTEHDDVATGSAAKGVENAPSVSETHISDMDLDEQDDVLLARLLKKGVA 111

Query: 68  FNVASAKSTDLVISARS 85
            NV   KS DLVISA S
Sbjct: 112 SNVVPTKSVDLVISAHS 128

[Close]

BLAST of MELO3C019304 vs. NCBI nr
Match: gi|659083317|ref|XP_008442287.1| (PREDICTED: uncharacterized protein LOC103486195 [Cucumis melo])

HSP 1 Score: 94.0 bits (232), Expect = 1.4e-16
Identity = 45/76 (59.21%), Postives = 57/76 (75.00%), Query Frame = 1


Query: 9  SQVHASESYHLPKHEKVADGSAAKGVGNAPSVSETHISDMDSDEKDDVPLARLLKKGFAF 68
          + +H SES+H+P HE++   SA K   NAPSVSETH+S+MD D+ DD+PLARLLKK +A 
Sbjct: 19 TSLHVSESFHVPVHEEIVVKSAVKSAENAPSVSETHVSNMDLDDLDDIPLARLLKKSYAS 78

Query: 69 NVASAKSTDLVISARS 85
           VA AK TD +ISA S
Sbjct: 79 EVALAKPTDPIISAHS 94

[Close]

BLAST of MELO3C019304 vs. NCBI nr
Match: gi|659125967|ref|XP_008462943.1| (PREDICTED: uncharacterized protein LOC103501207 [Cucumis melo])

HSP 1 Score: 73.2 bits (178), Expect = 2.5e-10
Identity = 43/77 (55.84%), Postives = 55/77 (71.43%), Query Frame = 1


Query: 8   KSQVHASESYHLPKHEKVADGSAAKGVGNAPSVSETHISDMDSDEKDDVPLARLLKKGFA 67
           K+   +SES H+P HE V   SAA  V  A SVSE +IS+M+S+E+DDVPLA+LLKKGF 
Sbjct: 46  KNLERSSESTHVPDHEDVGAESAATIVETALSVSENNISNMNSNEQDDVPLAKLLKKGFI 105

Query: 68  FNVASAKSTDLVISARS 85
            NVA   +T+ V+S RS
Sbjct: 106 SNVA---TTNSVMSTRS 119

[Close]

BLAST of MELO3C019304 vs. NCBI nr
Match: gi|659109747|ref|XP_008454855.1| (PREDICTED: uncharacterized protein LOC103495162 [Cucumis melo])

HSP 1 Score: 61.6 bits (148), Expect = 7.6e-07
Identity = 34/78 (43.59%), Postives = 45/78 (57.69%), Query Frame = 1


Query: 7   EKSQVHASESYHLPKHEKVADGSAAKGVGNAPSVSETHISDMDSDEKDDVPLARLLKKGF 66
           EK+  + S       HE+V  G+  K    AP+ SE H+S+MDSD+ DDVPLARL+KK  
Sbjct: 49  EKAHAYISSGSFELIHEEVVYGNVMKDAETAPAASEAHLSNMDSDDLDDVPLARLVKKVT 108

Query: 67  AFNVASAKSTDLVISARS 85
           A N       D V+S +S
Sbjct: 109 APNAVPKNVNDNVLSDQS 126

The following BLAST results are available for this feature:

BLAST of MELO3C019304 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659082042\|ref\|XP_008441636.1\|	1.7e-19	70.13	PREDICTED: uncharacterized protein LOC103485716 [Cucumis melo]	[more]
gi\|659083317\|ref\|XP_008442287.1\|	1.4e-16	59.21	PREDICTED: uncharacterized protein LOC103486195 [Cucumis melo]	[more]
gi\|659125967\|ref\|XP_008462943.1\|	2.5e-10	55.84	PREDICTED: uncharacterized protein LOC103501207 [Cucumis melo]	[more]
gi\|659109747\|ref\|XP_008454855.1\|	7.6e-07	43.59	PREDICTED: uncharacterized protein LOC103495162 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C019304T1	MELO3C019304T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 82..84 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C019304	Silver-seed gourd	carmeB0030
MELO3C019304	Silver-seed gourd	carmeB0341
MELO3C019304	Cucumber (Chinese Long) v3	cucmeB103
MELO3C019304	Cucumber (Chinese Long) v3	cucmeB532
MELO3C019304	Watermelon (97103) v2	mewmbB092
MELO3C019304	Watermelon (97103) v2	mewmbB094
MELO3C019304	Wax gourd	mewgoB107
MELO3C019304	Wax gourd	mewgoB126
MELO3C019304	Melon (DHL92) v3.5.1	memeB039
MELO3C019304	Cucumber (Gy14) v1	cgymeB246
MELO3C019304	Cucumber (Gy14) v1	cgymeB511
MELO3C019304	Cucurbita maxima (Rimu)	cmameB087
MELO3C019304	Cucurbita maxima (Rimu)	cmameB451
MELO3C019304	Cucurbita maxima (Rimu)	cmameB502
MELO3C019304	Cucurbita maxima (Rimu)	cmameB533
MELO3C019304	Cucurbita moschata (Rifu)	cmomeB443
MELO3C019304	Cucurbita moschata (Rifu)	cmomeB482
MELO3C019304	Cucurbita moschata (Rifu)	cmomeB523
MELO3C019304	Wild cucumber (PI 183967)	cpimeB096
MELO3C019304	Wild cucumber (PI 183967)	cpimeB520
MELO3C019304	Cucumber (Chinese Long) v2	cumeB097
MELO3C019304	Cucumber (Chinese Long) v2	cumeB516
MELO3C019304	Watermelon (Charleston Gray)	mewcgB090
MELO3C019304	Watermelon (Charleston Gray)	mewcgB092
MELO3C019304	Watermelon (97103) v1	mewmB124
MELO3C019304	Cucurbita pepo (Zucchini)	cpemeB214
MELO3C019304	Cucurbita pepo (Zucchini)	cpemeB257
MELO3C019304	Cucurbita pepo (Zucchini)	cpemeB599
MELO3C019304	Cucurbita pepo (Zucchini)	cpemeB667
MELO3C019304	Bottle gourd (USVL1VR-Ls)	lsimeB053
MELO3C019304	Bottle gourd (USVL1VR-Ls)	lsimeB088
MELO3C019304	Cucumber (Gy14) v2	cgybmeB083
MELO3C019304	Cucumber (Gy14) v2	cgybmeB452