MELO3C019249T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C019249T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	glutathione S-transferase tau 2
Location	chr11 : 9855072 .. 9855245 (-)
Sequence length	174

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAAAGTAACCCAGTTTGTGGAGAAGGGAAAGGGCAAAGATATGACGTTTGATGAACACTACGAGGAGTTTGAGAAGGTGGTTGAGAATTTAAGTCTTTTAGAGCAAGAGGCGCTAAGGCCGAAGAAAAAGAGAAAGGTTATAATGAAGAAGAAGGCCTTGAAGGCATAA

mRNA sequence

ATGGAAAAAGTAACCCAGTTTGTGGAGAAGGGAAAGGGCAAAGATATGACGTTTGATGAACACTACGAGGAGTTTGAGAAGGTGGTTGAGAATTTAAGTCTTTTAGAGCAAGAGGCGCTAAGGCCGAAGAAAAAGAGAAAGGTTATAATGAAGAAGAAGGCCTTGAAGGCATAA

Coding sequence (CDS)

ATGGAAAAAGTAACCCAGTTTGTGGAGAAGGGAAAGGGCAAAGATATGACGTTTGATGAACACTACGAGGAGTTTGAGAAGGTGGTTGAGAATTTAAGTCTTTTAGAGCAAGAGGCGCTAAGGCCGAAGAAAAAGAGAAAGGTTATAATGAAGAAGAAGGCCTTGAAGGCATAA

Protein sequence

MEKVTQFVEKGKGKDMTFDEHYEEFEKVVENLSLLEQEALRPKKKRKVIMKKKALKA*

Homology

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BLAST of MELO3C019249T1 vs. NCBI nr
Match: gi|659083323|ref|XP_008442290.1| (PREDICTED: stress response protein NST1-like [Cucumis melo])

HSP 1 Score: 57.4 bits (137), Expect = 9.7e-06
Identity = 29/57 (50.88%), Postives = 39/57 (68.42%), Query Frame = 1


Query: 1   MEKVTQFVEKGKGKDMTFDEHYEEFEKVVENLSLLEQEAL-RPKKKRKVIMKKKALK 57
           ++K+   VEKGK K+ TF+E Y+EFEK ++  S LE   + RP KKR V MKKK L+
Sbjct: 56  VDKLALSVEKGKEKEKTFEEFYKEFEKEIDEFSPLEDNVVERPAKKRNVTMKKKVLR 112

The following BLAST results are available for this feature:

BLAST of MELO3C019249T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659083323\|ref\|XP_008442290.1\|	9.7e-06	50.88	PREDICTED: stress response protein NST1-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C019249	MELO3C019249	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C019249T1	MELO3C019249T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C019249T1.cds1	MELO3C019249T1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 18..38 scor