MELO3C019189T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C019189T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Retrotransposon protein, putative, Ty3-gypsy subclass
Location	chr8 : 14169608 .. 14171115 (+)
Sequence length	1215

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGAAGCCGCTGTGTCAGTAGGCAAGTTGGAAAGTTTAGTTGCACATTTCCAAGTGCGACCTTTTTTGATAGACCGTATTATTAAAGCCCAGCTAGATGATGCAAGACTGAGGAAGTTAGCAGAAGAGGTAAGACAAAACCAAAGATTGAATTATAGCTTGAGGGGTGATGGTGCCTTGATGAAATGTGATAGGTTGTGTGTACCCAGTGACCAAACGATAAAAGATCAAATTTTAGAGGAAGCACATAGTTCTGCATATGCAATGCATCCTGGTAGTACGAAAGTGTATAGAACTTTGAAGAAACACTATTGGTGGCCAGGTATAAAGCGTGAGATTGCAGATTATGTGGCTAAGTGTTTGATATGTCAGCAAGTTAAACCTGAACGTCAGAGACCAGCGGGACTCCTAAATCCTCTTCCAGTACCGGAATGGAAATGGGAGCATGTTACCATGGACTTTCATTTGGGACTACCCCGCACAACGAATGGGAATGATGGCATTTGGGTGATAGTTGACAGACTTACGAAGACAGCAAGATTTCTACCAAAGTCAAGGTCACTTTCACTTTGGATAAGCTGGCCAAATTGTATGTTGATAAAATTGTGAGTGCGTATGGAGCCCCAATATCTATTGTGTCTGATCGAGACTCCAAGTTTACCTCAAAGTTTTGGCCAAGTTTACAACAAGCCTTAGGTACCAAGTTACATTTTAGTACCGCATTTCATCCTCAGATAGATGGCCAGTAAGAACGAACCATTCAAACTTTGGAAGATATGCTTAGAGCTTGTGCTTTGCAGTTTAAGGGTAATTGGGATGCTCATCTATCCTTGATGGAATTTGCATATAATAATAGTTTCCATTCAAGTATTGGAATGGCACGATATGAGGCTTTGTATGGTAGATGTTGTAGAACTCTCGTGTGCTGGAATGAAGTTGGAGAAAGGAAGTTAGTGGGGCTAGAATTAGTACAAATCACTTCAGAGAATGTGAAGATTATTAGGGAAAGATTGAAAACAGCCCAGGATCGTAAAAAAAGTTATGCAGATAAGCGCCGACGAGATTTAGAATTTGAAGTTAGTGACAAAGTCTTTCTAAAGTTATCTCCTTGGAAAGGTGTGCTTCGATTTGGCAAAAAAGGAAAGTTGAGTCCAAGATTTATTGGGCCTTATGAGATACTTGAACGTATTGGGCCTGTAACATACCGTTTGGCGTTACCTATGGAACTTTCCAGGATTCCTGATGTGTTTCATGTGTCAATGCTGCGTAAGTACGTCCCAGATCCAGCTCATATTCTTGAAGCACAACCAGTTCATTTGAAAGAAAACTTGTCTTACGAAGAGGAGCCAATACAAATTCTTGACAAAAAAGAACAAGTGGTAAGGAACAAAATGATCCCATTAGTTAAGGTTCTTTGGAGGAACCATAATACTGAAGAAGCAACGTGGGAAACAGAGCAAGCAATGAAGGCGCAATACCCATATCTTTTCACATCATCACCTTGA

mRNA sequence

ATGGGTGAAGCCGCTGTGTCAGTAGGCAAGTTGGAAAGTTTAGTTGCACATTTCCAAGTGCGACCTTTTTTGATAGACCGTATTATTAAAGCCCAGCTAGATGATGCAAGACTGAGGAAGTTAGCAGAAGAGGTAAGACAAAACCAAAGATTGAATTATAGCTTGAGGGGTGATGGTGCCTTGATGAAATGTGATAGGTTGTGTGTACCCAGTGACCAAACGATAAAAGATCAAATTTTAGAGGAAGCACATAGTTCTGCATATGCAATGCATCCTGGTAGTACGAAAGTGTATAGAACTTTGAAGAAACACTATTGGTGGCCAGGTATAAAGCGTGAGATTGCAGATTATGTGGCTAAGTGTTTGATATGTCAGCAAGTTAAACCTGAACGTCAGAGACCAGCGGGACTCCTAAATCCTCTTCCAGTACCGGAATGGAAATGGGAGCATGTTACCATGGACTTTCATTTGGGACTACCCCGCACAACGAATGGGAATGATGGCATTTGGTTTAAGGGTAATTGGGATGCTCATCTATCCTTGATGGAATTTGCATATAATAATAGTTTCCATTCAAGTATTGGAATGGCACGATATGAGGCTTTGTATGGTAGATGTTGTAGAACTCTCGTGTGCTGGAATGAAGTTGGAGAAAGGAAGTTAGTGGGGCTAGAATTAGTACAAATCACTTCAGAGAATGTGAAGATTATTAGGGAAAGATTGAAAACAGCCCAGGATCGTAAAAAAAGTTATGCAGATAAGCGCCGACGAGATTTAGAATTTGAAGTTAGTGACAAAGTCTTTCTAAAGTTATCTCCTTGGAAAGGTGTGCTTCGATTTGGCAAAAAAGGAAAGTTGAGTCCAAGATTTATTGGGCCTTATGAGATACTTGAACGTATTGGGCCTGTAACATACCGTTTGGCGTTACCTATGGAACTTTCCAGGATTCCTGATGTGTTTCATGTGTCAATGCTGCGTAAGTACGTCCCAGATCCAGCTCATATTCTTGAAGCACAACCAGTTCATTTGAAAGAAAACTTGTCTTACGAAGAGGAGCCAATACAAATTCTTGACAAAAAAGAACAAGTGGTAAGGAACAAAATGATCCCATTAGTTAAGGTTCTTTGGAGGAACCATAATACTGAAGAAGCAACGTGGGAAACAGAGCAAGCAATGAAGGCGCAATACCCATATCTTTTCACATCATCACCTTGA

Coding sequence (CDS)

ATGGGTGAAGCCGCTGTGTCAGTAGGCAAGTTGGAAAGTTTAGTTGCACATTTCCAAGTGCGACCTTTTTTGATAGACCGTATTATTAAAGCCCAGCTAGATGATGCAAGACTGAGGAAGTTAGCAGAAGAGGTAAGACAAAACCAAAGATTGAATTATAGCTTGAGGGGTGATGGTGCCTTGATGAAATGTGATAGGTTGTGTGTACCCAGTGACCAAACGATAAAAGATCAAATTTTAGAGGAAGCACATAGTTCTGCATATGCAATGCATCCTGGTAGTACGAAAGTGTATAGAACTTTGAAGAAACACTATTGGTGGCCAGGTATAAAGCGTGAGATTGCAGATTATGTGGCTAAGTGTTTGATATGTCAGCAAGTTAAACCTGAACGTCAGAGACCAGCGGGACTCCTAAATCCTCTTCCAGTACCGGAATGGAAATGGGAGCATGTTACCATGGACTTTCATTTGGGACTACCCCGCACAACGAATGGGAATGATGGCATTTGGTTTAAGGGTAATTGGGATGCTCATCTATCCTTGATGGAATTTGCATATAATAATAGTTTCCATTCAAGTATTGGAATGGCACGATATGAGGCTTTGTATGGTAGATGTTGTAGAACTCTCGTGTGCTGGAATGAAGTTGGAGAAAGGAAGTTAGTGGGGCTAGAATTAGTACAAATCACTTCAGAGAATGTGAAGATTATTAGGGAAAGATTGAAAACAGCCCAGGATCGTAAAAAAAGTTATGCAGATAAGCGCCGACGAGATTTAGAATTTGAAGTTAGTGACAAAGTCTTTCTAAAGTTATCTCCTTGGAAAGGTGTGCTTCGATTTGGCAAAAAAGGAAAGTTGAGTCCAAGATTTATTGGGCCTTATGAGATACTTGAACGTATTGGGCCTGTAACATACCGTTTGGCGTTACCTATGGAACTTTCCAGGATTCCTGATGTGTTTCATGTGTCAATGCTGCGTAAGTACGTCCCAGATCCAGCTCATATTCTTGAAGCACAACCAGTTCATTTGAAAGAAAACTTGTCTTACGAAGAGGAGCCAATACAAATTCTTGACAAAAAAGAACAAGTGGTAAGGAACAAAATGATCCCATTAGTTAAGGTTCTTTGGAGGAACCATAATACTGAAGAAGCAACGTGGGAAACAGAGCAAGCAATGAAGGCGCAATACCCATATCTTTTCACATCATCACCTTGA

Protein sequence

MGEAAVSVGKLESLVAHFQVRPFLIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGALMKCDRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRTLKKHYWWPGIKREIADYVAKCLICQQVKPERQRPAGLLNPLPVPEWKWEHVTMDFHLGLPRTTNGNDGIWFKGNWDAHLSLMEFAYNNSFHSSIGMARYEALYGRCCRTLVCWNEVGERKLVGLELVQITSENVKIIRERLKTAQDRKKSYADKRRRDLEFEVSDKVFLKLSPWKGVLRFGKKGKLSPRFIGPYEILERIGPVTYRLALPMELSRIPDVFHVSMLRKYVPDPAHILEAQPVHLKENLSYEEEPIQILDKKEQVVRNKMIPLVKVLWRNHNTEEATWETEQAMKAQYPYLFTSSP*

Homology

[Close]

BLAST of MELO3C019189T1 vs. Swiss-Prot
Match: TF28_SCHPO (Transposon Tf2-8 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-8 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.8e-13
Identity = 40/142 (28.17%), Postives = 70/142 (49.30%), Query Frame = 1


Query: 26   DRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGALMKC-DRLCVPSDQTIKDQILEEAH 85
            ++++    +D +L  L     +    N  L+ DG L+   D++ +P+D  +   I+++ H
Sbjct: 862  NQVVTEYTNDTKLLNLLNNEDKRVEENIQLK-DGLLINSKDQILLPNDTQLTRTIIKKYH 921

Query: 86   SSAYAMHPGSTKVYRTLKKHYWWPGIKREIADYVAKCLICQQVKPERQRPAGLLNPLPVP 145
                 +HPG   +   + + + W GI+++I +YV  C  CQ  K    +P G L P+P  
Sbjct: 922  EEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPS 981

Query: 146  EWKWEHVTMDFHLGLPRTTNGN 167
            E  WE ++MDF   LP ++  N
Sbjct: 982  ERPWESLSMDFITALPESSGYN 1002

HSP 2 Score: 68.9 bits (167), Expect = 1.4e-10
Identity = 49/158 (31.01%), Postives = 77/158 (48.73%), Query Frame = 1


Query: 175  WDAHLSLMEFAYNNSFHSSIGMARYEAL--YGRCCRTLVCWNEVGERKLVGLELVQITSE 234
            W  H+SL++ +YNN+ HS+  M  +E +  Y      L   +   +      E +Q+   
Sbjct: 1107 WVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTDENSQETIQV--- 1166

Query: 235  NVKIIRERLKTAQDRKKSYADKRRRDLE-FEVSDKVFLKLSPWKGVLRFGKKGKLSPRFI 294
              + ++E L T   + K Y D + +++E F+  D V +K +   G L   K  KL+P F 
Sbjct: 1167 -FQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTK-TGFLH--KSNKLAPSFA 1226

Query: 295  GPYEILERIGPVTYRLALPMELSRI-PDVFHVSMLRKY 329
            GP+ +L++ GP  Y L LP  +  +    FHVS L KY
Sbjct: 1227 GPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of MELO3C019189T1 vs. Swiss-Prot
Match: YG31B_YEAST (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 78.6 bits (192), Expect = 1.8e-13
Identity = 45/121 (37.19%), Postives = 60/121 (49.59%), Query Frame = 1


Query: 44   EVRQNQRLNYSLRGDGALMKCDRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRTLKK 103
            E+ +  R NYSL  D  +   DRL VP  Q      L   H+  +  H G T     +  
Sbjct: 1067 ELSETFRKNYSLE-DEMIYYQDRLVVPIKQQNAVMRLYHDHT-LFGGHFGVTVTLAKISP 1126

Query: 104  HYWWPGIKREIADYVAKCLICQQVKPERQRPAGLLNPLPVPEWKWEHVTMDFHLGLPRTT 163
             Y+WP ++  I  Y+  C+ CQ +K  R R  GLL PLP+ E +W  ++MDF  GLP T+
Sbjct: 1127 IYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLDISMDFVTGLPPTS 1185

Query: 164  N 165
            N
Sbjct: 1187 N 1185

[Close]

BLAST of MELO3C019189T1 vs. Swiss-Prot
Match: YI31B_YEAST (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2)

HSP 1 Score: 78.6 bits (192), Expect = 1.8e-13
Identity = 45/121 (37.19%), Postives = 60/121 (49.59%), Query Frame = 1


Query: 44   EVRQNQRLNYSLRGDGALMKCDRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRTLKK 103
            E+ +  R NYSL  D  +   DRL VP  Q      L   H+  +  H G T     +  
Sbjct: 1093 ELSETFRKNYSLE-DEMIYYQDRLVVPIKQQNAVMRLYHDHT-LFGGHFGVTVTLAKISP 1152

Query: 104  HYWWPGIKREIADYVAKCLICQQVKPERQRPAGLLNPLPVPEWKWEHVTMDFHLGLPRTT 163
             Y+WP ++  I  Y+  C+ CQ +K  R R  GLL PLP+ E +W  ++MDF  GLP T+
Sbjct: 1153 IYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLDISMDFVTGLPPTS 1211

Query: 164  N 165
            N
Sbjct: 1213 N 1211

[Close]

BLAST of MELO3C019189T1 vs. Swiss-Prot
Match: TF212_SCHPO (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.8e-13
Identity = 40/142 (28.17%), Postives = 70/142 (49.30%), Query Frame = 1


Query: 26   DRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGALMKC-DRLCVPSDQTIKDQILEEAH 85
            ++++    +D +L  L     +    N  L+ DG L+   D++ +P+D  +   I+++ H
Sbjct: 862  NQVVTEYTNDTKLLNLLNNEDKRVEENIQLK-DGLLINSKDQILLPNDTQLTRTIIKKYH 921

Query: 86   SSAYAMHPGSTKVYRTLKKHYWWPGIKREIADYVAKCLICQQVKPERQRPAGLLNPLPVP 145
                 +HPG   +   + + + W GI+++I +YV  C  CQ  K    +P G L P+P  
Sbjct: 922  EEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPS 981

Query: 146  EWKWEHVTMDFHLGLPRTTNGN 167
            E  WE ++MDF   LP ++  N
Sbjct: 982  ERPWESLSMDFITALPESSGYN 1002

HSP 2 Score: 68.9 bits (167), Expect = 1.4e-10
Identity = 49/158 (31.01%), Postives = 77/158 (48.73%), Query Frame = 1


Query: 175  WDAHLSLMEFAYNNSFHSSIGMARYEAL--YGRCCRTLVCWNEVGERKLVGLELVQITSE 234
            W  H+SL++ +YNN+ HS+  M  +E +  Y      L   +   +      E +Q+   
Sbjct: 1107 WVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTDENSQETIQV--- 1166

Query: 235  NVKIIRERLKTAQDRKKSYADKRRRDLE-FEVSDKVFLKLSPWKGVLRFGKKGKLSPRFI 294
              + ++E L T   + K Y D + +++E F+  D V +K +   G L   K  KL+P F 
Sbjct: 1167 -FQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTK-TGFLH--KSNKLAPSFA 1226

Query: 295  GPYEILERIGPVTYRLALPMELSRI-PDVFHVSMLRKY 329
            GP+ +L++ GP  Y L LP  +  +    FHVS L KY
Sbjct: 1227 GPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of MELO3C019189T1 vs. Swiss-Prot
Match: TF211_SCHPO (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.8e-13
Identity = 40/142 (28.17%), Postives = 70/142 (49.30%), Query Frame = 1


Query: 26   DRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGALMKC-DRLCVPSDQTIKDQILEEAH 85
            ++++    +D +L  L     +    N  L+ DG L+   D++ +P+D  +   I+++ H
Sbjct: 862  NQVVTEYTNDTKLLNLLNNEDKRVEENIQLK-DGLLINSKDQILLPNDTQLTRTIIKKYH 921

Query: 86   SSAYAMHPGSTKVYRTLKKHYWWPGIKREIADYVAKCLICQQVKPERQRPAGLLNPLPVP 145
                 +HPG   +   + + + W GI+++I +YV  C  CQ  K    +P G L P+P  
Sbjct: 922  EEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPS 981

Query: 146  EWKWEHVTMDFHLGLPRTTNGN 167
            E  WE ++MDF   LP ++  N
Sbjct: 982  ERPWESLSMDFITALPESSGYN 1002

HSP 2 Score: 68.9 bits (167), Expect = 1.4e-10
Identity = 49/158 (31.01%), Postives = 77/158 (48.73%), Query Frame = 1


Query: 175  WDAHLSLMEFAYNNSFHSSIGMARYEAL--YGRCCRTLVCWNEVGERKLVGLELVQITSE 234
            W  H+SL++ +YNN+ HS+  M  +E +  Y      L   +   +      E +Q+   
Sbjct: 1107 WVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTDENSQETIQV--- 1166

Query: 235  NVKIIRERLKTAQDRKKSYADKRRRDLE-FEVSDKVFLKLSPWKGVLRFGKKGKLSPRFI 294
              + ++E L T   + K Y D + +++E F+  D V +K +   G L   K  KL+P F 
Sbjct: 1167 -FQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTK-TGFLH--KSNKLAPSFA 1226

Query: 295  GPYEILERIGPVTYRLALPMELSRI-PDVFHVSMLRKY 329
            GP+ +L++ GP  Y L LP  +  +    FHVS L KY
Sbjct: 1227 GPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of MELO3C019189T1 vs. TrEMBL
Match: A0A061F9L8_THECC (Retrotransposon protein, putative OS=Theobroma cacao GN=TCM_033222 PE=4 SV=1)

HSP 1 Score: 481.1 bits (1237), Expect = 1.3e-132
Identity = 230/407 (56.51%), Postives = 303/407 (74.45%), Query Frame = 1


Query: 3   EAAVSVGKLESLVAHFQVRPFLIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGALM 62
           E  +  G+  SL+A F VRP L+++I   Q  D  LRK  +++       + LR D  LM
Sbjct: 425 EVQLRNGEDGSLLASFIVRPSLLNQIKDIQRSDDELRKEIQKLIDEGVSEFRLREDNILM 484

Query: 63  KCDRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRTLKKHYWWPGIKREIADYVAKCL 122
             DR+CVP    ++  I+EEAHSSAYA+HP STK+YRT++++YWWPG+KR+IA++VAKCL
Sbjct: 485 FRDRVCVPKGNQLRQAIMEEAHSSAYALHPESTKMYRTIRENYWWPGMKRDIAEFVAKCL 544

Query: 123 ICQQVKPERQRPAGLLNPLPVPEWKWEHV------TMDFHLGLPRTTNGNDGIWFKGNWD 182
           +CQQVK E QRP G L  LPVPEWKWEH       T+     + R    +    F G+WD
Sbjct: 545 VCQQVKAEHQRPVGTLQSLPVPEWKWEHTDGQSERTIQIMEDMLRACVMD----FLGSWD 604

Query: 183 AHLSLMEFAYNNSFHSSIGMARYEALYGRCCRTLVCWNEVGERKLVGLELVQITSENVKI 242
            HL L+EFAYNNSF SSI MA YEALYG+ CRT +CW+EVGE+KL  +EL+++T++ +K+
Sbjct: 605 RHLPLVEFAYNNSFQSSISMAPYEALYGKKCRTPLCWDEVGEKKLCSVELIELTNDKIKV 664

Query: 243 IRERLKTAQDRKKSYADKRRRDLEFEVSDKVFLKLSPWKGVLRFGKKGKLSPRFIGPYEI 302
           IRERLK AQDR+KSYADKRR+DLEF++ D+VFLK+SPWKGV+RF K+GKL+PR+IGP+ I
Sbjct: 665 IRERLKVAQDRQKSYADKRRKDLEFKIDDRVFLKVSPWKGVIRFAKRGKLNPRYIGPFRI 724

Query: 303 LERIGPVTYRLALPMELSRIPDVFHVSMLRKYVPDPAHILEAQPVHLKENLSYEEEPIQI 362
           +ERIGPV YRL LP EL RI +VFHVSML+KYVPDP+HILEA  + L ++L +E +P+ I
Sbjct: 725 IERIGPVAYRLELPPELDRIHNVFHVSMLKKYVPDPSHILEAPLIELHDDLKFEVQPVSI 784

Query: 363 LDKKEQVVRNKMIPLVKVLWRNHNTEEATWETEQAMKAQYPYLFTSS 404
           LD+K++V+RNK I +VKVLW++   EE TWE E  M+ QYP+LF  +
Sbjct: 785 LDRKDRVLRNKSISMVKVLWKSARMEEMTWEVEHQMRNQYPHLFVET 827

[Close]

BLAST of MELO3C019189T1 vs. TrEMBL
Match: Q5CAI7_ORYSJ (OSJNBa0032N05.11 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0032N05.11 PE=4 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 6.6e-108
Identity = 189/425 (44.47%), Postives = 280/425 (65.88%), Query Frame = 1


Query: 15   VAHFQVRPFLIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGALMKCDRLCVPSDQT 74
            VA  + +P LID++ +AQ++D  ++++ + +R+ + + +     G +   +R+CVP ++ 
Sbjct: 979  VAALEAKPTLIDQVREAQINDPDIQEIKKNMRRGKAIGFLEDEQGTVWLGERICVPDNKD 1038

Query: 75   IKDQILEEAHSSAYAMHPGSTKVYRTLKKHYWWPGIKREIADYVAKCLICQQVKPERQRP 134
            +KD +L+EAH + Y++HPGSTK+Y+ LK+ +WW  +KREIA+YVA C +CQ+VK E Q+P
Sbjct: 1039 LKDAVLKEAHDTLYSIHPGSTKMYQDLKERFWWASMKREIAEYVAVCDVCQRVKAEHQKP 1098

Query: 135  AGLLNPLPVPEWKWEHVTMDFHLGLPRTTNGNDGIW------------------------ 194
            AGLL PL +PEWKWE + MDF  GLPRT++G+D IW                        
Sbjct: 1099 AGLLQPLKIPEWKWEEIGMDFITGLPRTSSGHDSIWVIVDRLTKVAHFIPTDGQTERVNQ 1158

Query: 195  ------------FKGNWDAHLSLMEFAYNNSFHSSIGMARYEALYGRCCRTLVCWNEVGE 254
                        F G+WD +L   EF+YNNS+ +S+ MA YEALYGR CRT + W++ GE
Sbjct: 1159 ILEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGE 1218

Query: 255  RKLVGLELVQITSENVKIIRERLKTAQDRKKSYADKRRRDLEFEVSDKVFLKLSPWKGVL 314
            R++ G ++++   E VKII+ERL+ AQ R KSYAD RRRDL FE  D V+L+++P +GV 
Sbjct: 1219 RQVFGTDILREAEEKVKIIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVH 1278

Query: 315  RFGKKGKLSPRFIGPYEILERIGPVTYRLALPMELSRIPDVFHVSMLRKYVPDPAHILEA 374
            RF  KGKL+PRF+GPY+I+ R G V Y+L LP  L+   +VFHVS L+K +  P      
Sbjct: 1279 RFHTKGKLAPRFVGPYKIVSRRGEVAYQLELPQSLAGFHNVFHVSQLKKCLRIPTEEANI 1338

Query: 375  QPVHLKENLSYEEEPIQILDKKEQVVRNKMIPLVKVLWRNHNTEEATWETEQAMKAQYPY 404
            + + ++E+L+Y E+PI+IL+  E+  RN++I   KV W NH+ EE+TWE E  +K+ +P+
Sbjct: 1339 EQIEVQEDLTYVEKPIRILETNERRTRNRVIRFCKVQWSNHSEEESTWEREDELKSAHPH 1398

[Close]

BLAST of MELO3C019189T1 vs. TrEMBL
Match: Q6UU73_ORYSJ (Putative polyprotein OS=Oryza sativa subsp. japonica GN=OSJNBa0023H09.24 PE=4 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 1.1e-107
Identity = 186/412 (45.15%), Postives = 280/412 (67.96%), Query Frame = 1


Query: 15   VAHFQVRPFLIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGALMKCDRLCVPSDQT 74
            VA  + +P LID++ +AQ++D  ++++ + +R+ + + +     G +   +R+CVP ++ 
Sbjct: 1612 VAALEAKPTLIDQVREAQINDPDIQEIKKNMRRGKAIGFLEDEQGTVWLGERICVPDNKD 1671

Query: 75   IKDQILEEAHSSAYAMHPGSTKVYRTLKKHYWWPGIKREIADYVAKCLICQQVKPERQRP 134
            +KD IL+EAH + Y++HPGSTK+Y+ L++ +WW  +KREIA+YVA C +CQ+VK E Q+P
Sbjct: 1672 LKDAILKEAHDTLYSIHPGSTKMYQDLEERFWWASMKREIAEYVAVCDVCQRVKAEHQKP 1731

Query: 135  AGLLNPLPVPEWKWEHVTMDFHLGLPRTTNGNDGIW-----------------------F 194
            AGLL PL +PEWKWE + MDF  GLPRT++G+D IW                       F
Sbjct: 1732 AGLLQPLKIPEWKWEEIGMDFITGLPRTSSGHDSIWVTDGQTERVNQILEDMLRACALDF 1791

Query: 195  KGNWDAHLSLMEFAYNNSFHSSIGMARYEALYGRCCRTLVCWNEVGERKLVGLELVQITS 254
             G+WD +L   EF+YNNS+ +S+ MA YEALYGR CRT + W++ GER++ G ++++   
Sbjct: 1792 GGSWDRNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGERQVFGTDILREAE 1851

Query: 255  ENVKIIRERLKTAQDRKKSYADKRRRDLEFEVSDKVFLKLSPWKGVLRFGKKGKLSPRFI 314
            E VKII+ERL+ AQ R KSYAD RRRDL F+  D V+L+++P +GV RF  KGKL P F+
Sbjct: 1852 EKVKIIQERLRVAQSRHKSYADNRRRDLSFDEGDYVYLRVTPLRGVHRFHTKGKLVPHFV 1911

Query: 315  GPYEILERIGPVTYRLALPMELSRIPDVFHVSMLRKYVPDPAHILEAQPVHLKENLSYEE 374
            GPY+I+ R G V Y+L LP  L+ + +VFHVS L+K +  P      + + ++E+L+Y +
Sbjct: 1912 GPYKIVNRRGEVAYQLELPQSLAGVHNVFHVSQLKKCLRVPTEEANLEQIEVQEDLTYVQ 1971

Query: 375  EPIQILDKKEQVVRNKMIPLVKVLWRNHNTEEATWETEQAMKAQYPYLFTSS 404
            +PI+IL+ +E+  RN++I   KV W NH+ EE+TWE E  +K+ +P+LF SS
Sbjct: 1972 KPIRILEIEERRTRNRVIRFYKVQWSNHSEEESTWEREDELKSAHPHLFASS 2023

[Close]

BLAST of MELO3C019189T1 vs. TrEMBL
Match: Q7XRP6_ORYSJ (OSJNBb0080H08.12 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0080H08.12 PE=4 SV=2)

HSP 1 Score: 397.9 bits (1021), Expect = 1.5e-107
Identity = 190/425 (44.71%), Postives = 280/425 (65.88%), Query Frame = 1


Query: 15   VAHFQVRPFLIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGALMKCDRLCVPSDQT 74
            VA  + +P LID++ +AQ +D  ++++ + +R+ + + +     G +   +R+CVP ++ 
Sbjct: 1233 VAALEAKPTLIDQVREAQNNDPDIQEIKKNMRRGKAIGFLEDEHGTVWLGERICVPDNKD 1292

Query: 75   IKDQILEEAHSSAYAMHPGSTKVYRTLKKHYWWPGIKREIADYVAKCLICQQVKPERQRP 134
            +KD IL+EAH + Y++HPGSTK+Y+ LK+ +WW  +KREIA+YVA C +CQ+VK E Q+P
Sbjct: 1293 LKDAILKEAHDTLYSIHPGSTKMYQDLKERFWWASMKREIAEYVAVCDVCQRVKAEHQKP 1352

Query: 135  AGLLNPLPVPEWKWEHVTMDFHLGLPRTTNGNDGIW------------------------ 194
            AGLL PL +PEWKWE + MDF  GLPRT++G+D IW                        
Sbjct: 1353 AGLLQPLKIPEWKWEEIGMDFITGLPRTSSGHDSIWVIVDRLTKVAHFIPTDGQTERVNQ 1412

Query: 195  ------------FKGNWDAHLSLMEFAYNNSFHSSIGMARYEALYGRCCRTLVCWNEVGE 254
                        F G+WD +L   EF+YNNS+ +S+ MA YEALYGR CRT + W++ GE
Sbjct: 1413 ILEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGE 1472

Query: 255  RKLVGLELVQITSENVKIIRERLKTAQDRKKSYADKRRRDLEFEVSDKVFLKLSPWKGVL 314
            R++ G ++++   E VKII+ERL+ AQ R KSYAD RRRDL FE  D V+L+++P +GV 
Sbjct: 1473 RQVFGTDILREAEEKVKIIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVH 1532

Query: 315  RFGKKGKLSPRFIGPYEILERIGPVTYRLALPMELSRIPDVFHVSMLRKYVPDPAHILEA 374
            RF  KGKL+PRF+GPY+I+ R G V Y+L LP  L+ + +VFHVS L+K +  P      
Sbjct: 1533 RFHTKGKLAPRFVGPYKIVSRRGEVAYQLELPQSLAGVHNVFHVSQLKKCLRVPTEEANI 1592

Query: 375  QPVHLKENLSYEEEPIQILDKKEQVVRNKMIPLVKVLWRNHNTEEATWETEQAMKAQYPY 404
            + + ++E+L+Y E+PI+IL+  E+  RN++I   KV W NH+ EE+TWE E  +K+ +P+
Sbjct: 1593 EQIEVQEDLTYVEKPIRILETSERRTRNRVIRFCKVPWSNHSEEESTWEREDELKSAHPH 1652

[Close]

BLAST of MELO3C019189T1 vs. TrEMBL
Match: Q2R8S5_ORYSJ (Retrotransposon protein, putative, Ty3-gypsy subclass OS=Oryza sativa subsp. japonica GN=LOC_Os11g11170 PE=4 SV=1)

HSP 1 Score: 390.6 bits (1002), Expect = 2.4e-105
Identity = 186/425 (43.76%), Postives = 278/425 (65.41%), Query Frame = 1


Query: 15   VAHFQVRPFLIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGALMKCDRLCVPSDQT 74
            VA  + +P LID++ +AQ++D  ++++ + +R+ + + +     G +   +R+CVP ++ 
Sbjct: 1096 VAALEAKPTLIDQVREAQINDPDIQEIKKNMRRGKAIGFLKDEQGTVWLGERICVPDNKD 1155

Query: 75   IKDQILEEAHSSAYAMHPGSTKVYRTLKKHYWWPGIKREIADYVAKCLICQQVKPERQRP 134
            +KD IL+EAH + Y++HPGSTK+Y+ L + +WW  +KREIA+YVA C +CQ+VK E Q+P
Sbjct: 1156 LKDAILKEAHDTLYSIHPGSTKMYQDLNEGFWWASMKREIAEYVAVCDVCQRVKAEHQKP 1215

Query: 135  AGLLNPLPVPEWKWEHVTMDFHLGLPRTTNGNDGIW------------------------ 194
            AGLL PL +PEWKWE + MDF  GLPRT++G+D IW                        
Sbjct: 1216 AGLLQPLKIPEWKWEEIGMDFITGLPRTSSGHDSIWVIVDRLTKVAHFIPTDGQTERVNQ 1275

Query: 195  ------------FKGNWDAHLSLMEFAYNNSFHSSIGMARYEALYGRCCRTLVCWNEVGE 254
                        F G+WD +L   EF+YNNS+ +S+ MA YEALYGR CRT + W++ GE
Sbjct: 1276 ILEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGE 1335

Query: 255  RKLVGLELVQITSENVKIIRERLKTAQDRKKSYADKRRRDLEFEVSDKVFLKLSPWKGVL 314
            R++ G ++++   E VKII+ERL+ AQ R KSYAD RRRDL F   D V+L+++P++GV 
Sbjct: 1336 RQVFGTDILREAEEKVKIIQERLRVAQSRHKSYADNRRRDLSFGEGDYVYLRITPFRGVH 1395

Query: 315  RFGKKGKLSPRFIGPYEILERIGPVTYRLALPMELSRIPDVFHVSMLRKYVPDPAHILEA 374
            RF  K KL+PRF+GPY+I+ R G V Y+L LP  L+ + +VFHVS L+K +  P      
Sbjct: 1396 RFHTKEKLAPRFVGPYKIVNRRGEVAYQLELPQSLAGVHNVFHVSQLKKCLRVPTEETNL 1455

Query: 375  QPVHLKENLSYEEEPIQILDKKEQVVRNKMIPLVKVLWRNHNTEEATWETEQAMKAQYPY 404
            + + ++E+L+Y E+PI+IL+  E+  RN++I    V W NH+ EE+TWE E  +K+ +P+
Sbjct: 1456 EQIEVQEDLTYIEKPIRILEIDERRTRNRVIRFCNVQWSNHSEEESTWEREDELKSAHPH 1515

[Close]

BLAST of MELO3C019189T1 vs. NCBI nr
Match: gi|590612958|ref|XP_007022530.1| (Retrotransposon protein, putative [Theobroma cacao])

HSP 1 Score: 481.1 bits (1237), Expect = 1.9e-132
Identity = 230/407 (56.51%), Postives = 303/407 (74.45%), Query Frame = 1


Query: 3   EAAVSVGKLESLVAHFQVRPFLIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGALM 62
           E  +  G+  SL+A F VRP L+++I   Q  D  LRK  +++       + LR D  LM
Sbjct: 425 EVQLRNGEDGSLLASFIVRPSLLNQIKDIQRSDDELRKEIQKLIDEGVSEFRLREDNILM 484

Query: 63  KCDRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRTLKKHYWWPGIKREIADYVAKCL 122
             DR+CVP    ++  I+EEAHSSAYA+HP STK+YRT++++YWWPG+KR+IA++VAKCL
Sbjct: 485 FRDRVCVPKGNQLRQAIMEEAHSSAYALHPESTKMYRTIRENYWWPGMKRDIAEFVAKCL 544

Query: 123 ICQQVKPERQRPAGLLNPLPVPEWKWEHV------TMDFHLGLPRTTNGNDGIWFKGNWD 182
           +CQQVK E QRP G L  LPVPEWKWEH       T+     + R    +    F G+WD
Sbjct: 545 VCQQVKAEHQRPVGTLQSLPVPEWKWEHTDGQSERTIQIMEDMLRACVMD----FLGSWD 604

Query: 183 AHLSLMEFAYNNSFHSSIGMARYEALYGRCCRTLVCWNEVGERKLVGLELVQITSENVKI 242
            HL L+EFAYNNSF SSI MA YEALYG+ CRT +CW+EVGE+KL  +EL+++T++ +K+
Sbjct: 605 RHLPLVEFAYNNSFQSSISMAPYEALYGKKCRTPLCWDEVGEKKLCSVELIELTNDKIKV 664

Query: 243 IRERLKTAQDRKKSYADKRRRDLEFEVSDKVFLKLSPWKGVLRFGKKGKLSPRFIGPYEI 302
           IRERLK AQDR+KSYADKRR+DLEF++ D+VFLK+SPWKGV+RF K+GKL+PR+IGP+ I
Sbjct: 665 IRERLKVAQDRQKSYADKRRKDLEFKIDDRVFLKVSPWKGVIRFAKRGKLNPRYIGPFRI 724

Query: 303 LERIGPVTYRLALPMELSRIPDVFHVSMLRKYVPDPAHILEAQPVHLKENLSYEEEPIQI 362
           +ERIGPV YRL LP EL RI +VFHVSML+KYVPDP+HILEA  + L ++L +E +P+ I
Sbjct: 725 IERIGPVAYRLELPPELDRIHNVFHVSMLKKYVPDPSHILEAPLIELHDDLKFEVQPVSI 784

Query: 363 LDKKEQVVRNKMIPLVKVLWRNHNTEEATWETEQAMKAQYPYLFTSS 404
           LD+K++V+RNK I +VKVLW++   EE TWE E  M+ QYP+LF  +
Sbjct: 785 LDRKDRVLRNKSISMVKVLWKSARMEEMTWEVEHQMRNQYPHLFVET 827

[Close]

BLAST of MELO3C019189T1 vs. NCBI nr
Match: gi|32489966|emb|CAE05583.1| (OSJNBa0032N05.11 [Oryza sativa Japonica Group])

HSP 1 Score: 399.1 bits (1024), Expect = 9.5e-108
Identity = 189/425 (44.47%), Postives = 280/425 (65.88%), Query Frame = 1


Query: 15   VAHFQVRPFLIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGALMKCDRLCVPSDQT 74
            VA  + +P LID++ +AQ++D  ++++ + +R+ + + +     G +   +R+CVP ++ 
Sbjct: 979  VAALEAKPTLIDQVREAQINDPDIQEIKKNMRRGKAIGFLEDEQGTVWLGERICVPDNKD 1038

Query: 75   IKDQILEEAHSSAYAMHPGSTKVYRTLKKHYWWPGIKREIADYVAKCLICQQVKPERQRP 134
            +KD +L+EAH + Y++HPGSTK+Y+ LK+ +WW  +KREIA+YVA C +CQ+VK E Q+P
Sbjct: 1039 LKDAVLKEAHDTLYSIHPGSTKMYQDLKERFWWASMKREIAEYVAVCDVCQRVKAEHQKP 1098

Query: 135  AGLLNPLPVPEWKWEHVTMDFHLGLPRTTNGNDGIW------------------------ 194
            AGLL PL +PEWKWE + MDF  GLPRT++G+D IW                        
Sbjct: 1099 AGLLQPLKIPEWKWEEIGMDFITGLPRTSSGHDSIWVIVDRLTKVAHFIPTDGQTERVNQ 1158

Query: 195  ------------FKGNWDAHLSLMEFAYNNSFHSSIGMARYEALYGRCCRTLVCWNEVGE 254
                        F G+WD +L   EF+YNNS+ +S+ MA YEALYGR CRT + W++ GE
Sbjct: 1159 ILEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGE 1218

Query: 255  RKLVGLELVQITSENVKIIRERLKTAQDRKKSYADKRRRDLEFEVSDKVFLKLSPWKGVL 314
            R++ G ++++   E VKII+ERL+ AQ R KSYAD RRRDL FE  D V+L+++P +GV 
Sbjct: 1219 RQVFGTDILREAEEKVKIIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVH 1278

Query: 315  RFGKKGKLSPRFIGPYEILERIGPVTYRLALPMELSRIPDVFHVSMLRKYVPDPAHILEA 374
            RF  KGKL+PRF+GPY+I+ R G V Y+L LP  L+   +VFHVS L+K +  P      
Sbjct: 1279 RFHTKGKLAPRFVGPYKIVSRRGEVAYQLELPQSLAGFHNVFHVSQLKKCLRIPTEEANI 1338

Query: 375  QPVHLKENLSYEEEPIQILDKKEQVVRNKMIPLVKVLWRNHNTEEATWETEQAMKAQYPY 404
            + + ++E+L+Y E+PI+IL+  E+  RN++I   KV W NH+ EE+TWE E  +K+ +P+
Sbjct: 1339 EQIEVQEDLTYVEKPIRILETNERRTRNRVIRFCKVQWSNHSEEESTWEREDELKSAHPH 1398

[Close]

BLAST of MELO3C019189T1 vs. NCBI nr
Match: gi|34015295|gb|AAQ56486.1| (putative polyprotein [Oryza sativa Japonica Group])

HSP 1 Score: 398.3 bits (1022), Expect = 1.6e-107
Identity = 186/412 (45.15%), Postives = 280/412 (67.96%), Query Frame = 1


Query: 15   VAHFQVRPFLIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGALMKCDRLCVPSDQT 74
            VA  + +P LID++ +AQ++D  ++++ + +R+ + + +     G +   +R+CVP ++ 
Sbjct: 1612 VAALEAKPTLIDQVREAQINDPDIQEIKKNMRRGKAIGFLEDEQGTVWLGERICVPDNKD 1671

Query: 75   IKDQILEEAHSSAYAMHPGSTKVYRTLKKHYWWPGIKREIADYVAKCLICQQVKPERQRP 134
            +KD IL+EAH + Y++HPGSTK+Y+ L++ +WW  +KREIA+YVA C +CQ+VK E Q+P
Sbjct: 1672 LKDAILKEAHDTLYSIHPGSTKMYQDLEERFWWASMKREIAEYVAVCDVCQRVKAEHQKP 1731

Query: 135  AGLLNPLPVPEWKWEHVTMDFHLGLPRTTNGNDGIW-----------------------F 194
            AGLL PL +PEWKWE + MDF  GLPRT++G+D IW                       F
Sbjct: 1732 AGLLQPLKIPEWKWEEIGMDFITGLPRTSSGHDSIWVTDGQTERVNQILEDMLRACALDF 1791

Query: 195  KGNWDAHLSLMEFAYNNSFHSSIGMARYEALYGRCCRTLVCWNEVGERKLVGLELVQITS 254
             G+WD +L   EF+YNNS+ +S+ MA YEALYGR CRT + W++ GER++ G ++++   
Sbjct: 1792 GGSWDRNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGERQVFGTDILREAE 1851

Query: 255  ENVKIIRERLKTAQDRKKSYADKRRRDLEFEVSDKVFLKLSPWKGVLRFGKKGKLSPRFI 314
            E VKII+ERL+ AQ R KSYAD RRRDL F+  D V+L+++P +GV RF  KGKL P F+
Sbjct: 1852 EKVKIIQERLRVAQSRHKSYADNRRRDLSFDEGDYVYLRVTPLRGVHRFHTKGKLVPHFV 1911

Query: 315  GPYEILERIGPVTYRLALPMELSRIPDVFHVSMLRKYVPDPAHILEAQPVHLKENLSYEE 374
            GPY+I+ R G V Y+L LP  L+ + +VFHVS L+K +  P      + + ++E+L+Y +
Sbjct: 1912 GPYKIVNRRGEVAYQLELPQSLAGVHNVFHVSQLKKCLRVPTEEANLEQIEVQEDLTYVQ 1971

Query: 375  EPIQILDKKEQVVRNKMIPLVKVLWRNHNTEEATWETEQAMKAQYPYLFTSS 404
            +PI+IL+ +E+  RN++I   KV W NH+ EE+TWE E  +K+ +P+LF SS
Sbjct: 1972 KPIRILEIEERRTRNRVIRFYKVQWSNHSEEESTWEREDELKSAHPHLFASS 2023

[Close]

BLAST of MELO3C019189T1 vs. NCBI nr
Match: gi|38344420|emb|CAE02386.2| (OSJNBb0080H08.12 [Oryza sativa Japonica Group])

HSP 1 Score: 397.9 bits (1021), Expect = 2.1e-107
Identity = 190/425 (44.71%), Postives = 280/425 (65.88%), Query Frame = 1


Query: 15   VAHFQVRPFLIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGALMKCDRLCVPSDQT 74
            VA  + +P LID++ +AQ +D  ++++ + +R+ + + +     G +   +R+CVP ++ 
Sbjct: 1233 VAALEAKPTLIDQVREAQNNDPDIQEIKKNMRRGKAIGFLEDEHGTVWLGERICVPDNKD 1292

Query: 75   IKDQILEEAHSSAYAMHPGSTKVYRTLKKHYWWPGIKREIADYVAKCLICQQVKPERQRP 134
            +KD IL+EAH + Y++HPGSTK+Y+ LK+ +WW  +KREIA+YVA C +CQ+VK E Q+P
Sbjct: 1293 LKDAILKEAHDTLYSIHPGSTKMYQDLKERFWWASMKREIAEYVAVCDVCQRVKAEHQKP 1352

Query: 135  AGLLNPLPVPEWKWEHVTMDFHLGLPRTTNGNDGIW------------------------ 194
            AGLL PL +PEWKWE + MDF  GLPRT++G+D IW                        
Sbjct: 1353 AGLLQPLKIPEWKWEEIGMDFITGLPRTSSGHDSIWVIVDRLTKVAHFIPTDGQTERVNQ 1412

Query: 195  ------------FKGNWDAHLSLMEFAYNNSFHSSIGMARYEALYGRCCRTLVCWNEVGE 254
                        F G+WD +L   EF+YNNS+ +S+ MA YEALYGR CRT + W++ GE
Sbjct: 1413 ILEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGE 1472

Query: 255  RKLVGLELVQITSENVKIIRERLKTAQDRKKSYADKRRRDLEFEVSDKVFLKLSPWKGVL 314
            R++ G ++++   E VKII+ERL+ AQ R KSYAD RRRDL FE  D V+L+++P +GV 
Sbjct: 1473 RQVFGTDILREAEEKVKIIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVH 1532

Query: 315  RFGKKGKLSPRFIGPYEILERIGPVTYRLALPMELSRIPDVFHVSMLRKYVPDPAHILEA 374
            RF  KGKL+PRF+GPY+I+ R G V Y+L LP  L+ + +VFHVS L+K +  P      
Sbjct: 1533 RFHTKGKLAPRFVGPYKIVSRRGEVAYQLELPQSLAGVHNVFHVSQLKKCLRVPTEEANI 1592

Query: 375  QPVHLKENLSYEEEPIQILDKKEQVVRNKMIPLVKVLWRNHNTEEATWETEQAMKAQYPY 404
            + + ++E+L+Y E+PI+IL+  E+  RN++I   KV W NH+ EE+TWE E  +K+ +P+
Sbjct: 1593 EQIEVQEDLTYVEKPIRILETSERRTRNRVIRFCKVPWSNHSEEESTWEREDELKSAHPH 1652

[Close]

BLAST of MELO3C019189T1 vs. NCBI nr
Match: gi|77549283|gb|ABA92080.1| (retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa Japonica Group])

HSP 1 Score: 390.6 bits (1002), Expect = 3.4e-105
Identity = 186/425 (43.76%), Postives = 278/425 (65.41%), Query Frame = 1


Query: 15   VAHFQVRPFLIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGALMKCDRLCVPSDQT 74
            VA  + +P LID++ +AQ++D  ++++ + +R+ + + +     G +   +R+CVP ++ 
Sbjct: 1096 VAALEAKPTLIDQVREAQINDPDIQEIKKNMRRGKAIGFLKDEQGTVWLGERICVPDNKD 1155

Query: 75   IKDQILEEAHSSAYAMHPGSTKVYRTLKKHYWWPGIKREIADYVAKCLICQQVKPERQRP 134
            +KD IL+EAH + Y++HPGSTK+Y+ L + +WW  +KREIA+YVA C +CQ+VK E Q+P
Sbjct: 1156 LKDAILKEAHDTLYSIHPGSTKMYQDLNEGFWWASMKREIAEYVAVCDVCQRVKAEHQKP 1215

Query: 135  AGLLNPLPVPEWKWEHVTMDFHLGLPRTTNGNDGIW------------------------ 194
            AGLL PL +PEWKWE + MDF  GLPRT++G+D IW                        
Sbjct: 1216 AGLLQPLKIPEWKWEEIGMDFITGLPRTSSGHDSIWVIVDRLTKVAHFIPTDGQTERVNQ 1275

Query: 195  ------------FKGNWDAHLSLMEFAYNNSFHSSIGMARYEALYGRCCRTLVCWNEVGE 254
                        F G+WD +L   EF+YNNS+ +S+ MA YEALYGR CRT + W++ GE
Sbjct: 1276 ILEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGE 1335

Query: 255  RKLVGLELVQITSENVKIIRERLKTAQDRKKSYADKRRRDLEFEVSDKVFLKLSPWKGVL 314
            R++ G ++++   E VKII+ERL+ AQ R KSYAD RRRDL F   D V+L+++P++GV 
Sbjct: 1336 RQVFGTDILREAEEKVKIIQERLRVAQSRHKSYADNRRRDLSFGEGDYVYLRITPFRGVH 1395

Query: 315  RFGKKGKLSPRFIGPYEILERIGPVTYRLALPMELSRIPDVFHVSMLRKYVPDPAHILEA 374
            RF  K KL+PRF+GPY+I+ R G V Y+L LP  L+ + +VFHVS L+K +  P      
Sbjct: 1396 RFHTKEKLAPRFVGPYKIVNRRGEVAYQLELPQSLAGVHNVFHVSQLKKCLRVPTEETNL 1455

Query: 375  QPVHLKENLSYEEEPIQILDKKEQVVRNKMIPLVKVLWRNHNTEEATWETEQAMKAQYPY 404
            + + ++E+L+Y E+PI+IL+  E+  RN++I    V W NH+ EE+TWE E  +K+ +P+
Sbjct: 1456 EQIEVQEDLTYIEKPIRILEIDERRTRNRVIRFCNVQWSNHSEEESTWEREDELKSAHPH 1515

The following BLAST results are available for this feature:

BLAST of MELO3C019189T1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TF28_SCHPO	1.8e-13	28.17	Transposon Tf2-8 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
YG31B_YEAST	1.8e-13	37.19	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
YI31B_YEAST	1.8e-13	37.19	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
TF212_SCHPO	1.8e-13	28.17	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
TF211_SCHPO	1.8e-13	28.17	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of MELO3C019189T1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061F9L8_THECC	1.3e-132	56.51	Retrotransposon protein, putative OS=Theobroma cacao GN=TCM_033222 PE=4 SV=1	[more]
Q5CAI7_ORYSJ	6.6e-108	44.47	OSJNBa0032N05.11 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0032N05.11 PE=...	[more]
Q6UU73_ORYSJ	1.1e-107	45.15	Putative polyprotein OS=Oryza sativa subsp. japonica GN=OSJNBa0023H09.24 PE=4 SV...	[more]
Q7XRP6_ORYSJ	1.5e-107	44.71	OSJNBb0080H08.12 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0080H08.12 PE=...	[more]
Q2R8S5_ORYSJ	2.4e-105	43.76	Retrotransposon protein, putative, Ty3-gypsy subclass OS=Oryza sativa subsp. jap...	[more]

BLAST of MELO3C019189T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|590612958\|ref\|XP_007022530.1\|	1.9e-132	56.51	Retrotransposon protein, putative [Theobroma cacao]	[more]
gi\|32489966\|emb\|CAE05583.1\|	9.5e-108	44.47	OSJNBa0032N05.11 [Oryza sativa Japonica Group]	[more]
gi\|34015295\|gb\|AAQ56486.1\|	1.6e-107	45.15	putative polyprotein [Oryza sativa Japonica Group]	[more]
gi\|38344420\|emb\|CAE02386.2\|	2.1e-107	44.71	OSJNBb0080H08.12 [Oryza sativa Japonica Group]	[more]
gi\|77549283\|gb\|ABA92080.1\|	3.4e-105	43.76	retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa Japonica Gro...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR016197	Chromo-like_dom_sf
IPR023780	Chromo_domain

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006333	chromatin assembly or disassembly
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0000785	chromatin
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C019189	MELO3C019189	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C019189T1.cds1	MELO3C019189T1.cds1	CDS
MELO3C019189T1.cds2	MELO3C019189T1.cds2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C019189T1	MELO3C019189T1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016197	Chromo domain-like	unknown	SSF54160	Chromo domain-like	coord: 315..394 score: 7.5
IPR023780	Chromo domain	PFAM	PF00385	Chromo	coord: 352..399 score: 2.
None	No IPR available	unknown	Coil	Coil	coord: 234..254 scor
None	No IPR available	PANTHER	PTHR24559	FAMILY NOT NAMED	coord: 12..403 score: 1.4E
None	No IPR available	PANTHER	PTHR24559:SF207	SUBFAMILY NOT NAMED	coord: 12..403 score: 1.4E