MELO3C019180T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C019180T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionType III secretion ATP synthase HrcN
Locationchr8 : 13882481 .. 13882930 (+)
Sequence length450
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGGTTTTTATGTGCTTGAGCCACCAATAGCTAGAGAGGAAGAAGTGGATGGAATTACTTCATTGAGTGAAGCAACGAGTACGGAATCTACCGAACACACATCAAATAGGTATAGTAAGAAAAGAGCAAGAAGTGTGGATCCATCGGTAGCGGCAACGAATATTTTTGAGAATGTTATGAGCAGACACCTTTCAAGTGCTAATGATAATATTCAAGAAATTATTGCATTTTATAAACAGGTAGCTGAACGAGAGTCCACAAGAGAAGAACGTCGAAACTCATTAGCCAGTAAAATTAGAAGGATAAATAGATTAGTTCAAAAAAGGGTGAGAGCGGCTAAGATTATCACTAAAGATCAATCTCAGATTGACTATTTTTTTAATCTTCTACATGGTGAAAGATATGAATTCATAATGGAGGTTCCATATGAAGACGTTCATCCTTAA

mRNA sequence

ATGGATGGTTTTTATGTGCTTGAGCCACCAATAGCTAGAGAGGAAGAAGTGGATGGAATTACTTCATTGAGTGAAGCAACGAGTACGGAATCTACCGAACACACATCAAATAGGTATAGTAAGAAAAGAGCAAGAAGTGTGGATCCATCGGTAGCGGCAACGAATATTTTTGAGAATGTTATGAGCAGACACCTTTCAAGTGCTAATGATAATATTCAAGAAATTATTGCATTTTATAAACAGGTAGCTGAACGAGAGTCCACAAGAGAAGAACGTCGAAACTCATTAGCCAGTAAAATTAGAAGGATAAATAGATTAGTTCAAAAAAGGGTGAGAGCGGCTAAGATTATCACTAAAGATCAATCTCAGATTGACTATTTTTTTAATCTTCTACATGGTGAAAGATATGAATTCATAATGGAGGTTCCATATGAAGACGTTCATCCTTAA

Coding sequence (CDS)

ATGGATGGTTTTTATGTGCTTGAGCCACCAATAGCTAGAGAGGAAGAAGTGGATGGAATTACTTCATTGAGTGAAGCAACGAGTACGGAATCTACCGAACACACATCAAATAGGTATAGTAAGAAAAGAGCAAGAAGTGTGGATCCATCGGTAGCGGCAACGAATATTTTTGAGAATGTTATGAGCAGACACCTTTCAAGTGCTAATGATAATATTCAAGAAATTATTGCATTTTATAAACAGGTAGCTGAACGAGAGTCCACAAGAGAAGAACGTCGAAACTCATTAGCCAGTAAAATTAGAAGGATAAATAGATTAGTTCAAAAAAGGGTGAGAGCGGCTAAGATTATCACTAAAGATCAATCTCAGATTGACTATTTTTTTAATCTTCTACATGGTGAAAGATATGAATTCATAATGGAGGTTCCATATGAAGACGTTCATCCTTAA

Protein sequence

MDGFYVLEPPIAREEEVDGITSLSEATSTESTEHTSNRYSKKRARSVDPSVAATNIFENVMSRHLSSANDNIQEIIAFYKQVAERESTREERRNSLASKIRRINRLVQKRVRAAKIITKDQSQIDYFFNLLHGERYEFIMEVPYEDVHP*
Homology
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BLAST of MELO3C019180T1 vs. TrEMBL
Match: A0A0A0L2J4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G099560 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.3e-08
Identity = 36/55 (65.45%), Postives = 41/55 (74.55%), Query Frame = 1 

Query: 1  MDGFYVLEPPIAREEEVDGITSLSEATSTEST--EHTSNRYSKKRARSVDPSVAA 54
          MD FYVLEPPI   EEVDG  S+SEAT+   +   HTSNR+SKKRARSVD  VA+
Sbjct: 1  MDSFYVLEPPITGGEEVDGYASMSEATTNTQSYRAHTSNRFSKKRARSVDLLVAS 55

[Close]
BLAST of MELO3C019180T1 vs. NCBI nr
Match: gi|700201062|gb|KGN56195.1| (hypothetical protein Csa_3G099560 [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 1.9e-08
Identity = 36/55 (65.45%), Postives = 41/55 (74.55%), Query Frame = 1 

Query: 1  MDGFYVLEPPIAREEEVDGITSLSEATSTEST--EHTSNRYSKKRARSVDPSVAA 54
          MD FYVLEPPI   EEVDG  S+SEAT+   +   HTSNR+SKKRARSVD  VA+
Sbjct: 1  MDSFYVLEPPITGGEEVDGYASMSEATTNTQSYRAHTSNRFSKKRARSVDLLVAS 55

The following BLAST results are available for this feature:
BLAST of MELO3C019180T1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2J4_CUCSA1.3e-0865.45Uncharacterized protein OS=Cucumis sativus GN=Csa_3G099560 PE=4 SV=1[more]
BLAST of MELO3C019180T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700201062|gb|KGN56195.1|1.9e-0865.45hypothetical protein Csa_3G099560 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C019180MELO3C019180gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C019180T1MELO3C019180T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C019180T1.cds1MELO3C019180T1.cds1CDS