MELO3C019180 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C019180
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Type III secretion ATP synthase HrcN
Location	chr8 : 13882481 .. 13882930 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGGTTTTTATGTGCTTGAGCCACCAATAGCTAGAGAGGAAGAAGTGGATGGAATTACTTCATTGAGTGAAGCAACGAGTACGGAATCTACCGAACACACATCAAATAGGTATAGTAAGAAAAGAGCAAGAAGTGTGGATCCATCGGTAGCGGCAACGAATATTTTTGAGAATGTTATGAGCAGACACCTTTCAAGTGCTAATGATAATATTCAAGAAATTATTGCATTTTATAAACAGGTAGCTGAACGAGAGTCCACAAGAGAAGAACGTCGAAACTCATTAGCCAGTAAAATTAGAAGGATAAATAGATTAGTTCAAAAAAGGGTGAGAGCGGCTAAGATTATCACTAAAGATCAATCTCAGATTGACTATTTTTTTAATCTTCTACATGGTGAAAGATATGAATTCATAATGGAGGTTCCATATGAAGACGTTCATCCTTAA

mRNA sequence

ATGGATGGTTTTTATGTGCTTGAGCCACCAATAGCTAGAGAGGAAGAAGTGGATGGAATTACTTCATTGAGTGAAGCAACGAGTACGGAATCTACCGAACACACATCAAATAGGTATAGTAAGAAAAGAGCAAGAAGTGTGGATCCATCGGTAGCGGCAACGAATATTTTTGAGAATGTTATGAGCAGACACCTTTCAAGTGCTAATGATAATATTCAAGAAATTATTGCATTTTATAAACAGGTAGCTGAACGAGAGTCCACAAGAGAAGAACGTCGAAACTCATTAGCCAGTAAAATTAGAAGGATAAATAGATTAGTTCAAAAAAGGGTGAGAGCGGCTAAGATTATCACTAAAGATCAATCTCAGATTGACTATTTTTTTAATCTTCTACATGGTGAAAGATATGAATTCATAATGGAGGTTCCATATGAAGACGTTCATCCTTAA

Coding sequence (CDS)

ATGGATGGTTTTTATGTGCTTGAGCCACCAATAGCTAGAGAGGAAGAAGTGGATGGAATTACTTCATTGAGTGAAGCAACGAGTACGGAATCTACCGAACACACATCAAATAGGTATAGTAAGAAAAGAGCAAGAAGTGTGGATCCATCGGTAGCGGCAACGAATATTTTTGAGAATGTTATGAGCAGACACCTTTCAAGTGCTAATGATAATATTCAAGAAATTATTGCATTTTATAAACAGGTAGCTGAACGAGAGTCCACAAGAGAAGAACGTCGAAACTCATTAGCCAGTAAAATTAGAAGGATAAATAGATTAGTTCAAAAAAGGGTGAGAGCGGCTAAGATTATCACTAAAGATCAATCTCAGATTGACTATTTTTTTAATCTTCTACATGGTGAAAGATATGAATTCATAATGGAGGTTCCATATGAAGACGTTCATCCTTAA

Protein sequence

MDGFYVLEPPIAREEEVDGITSLSEATSTESTEHTSNRYSKKRARSVDPSVAATNIFENVMSRHLSSANDNIQEIIAFYKQVAERESTREERRNSLASKIRRINRLVQKRVRAAKIITKDQSQIDYFFNLLHGERYEFIMEVPYEDVHP*

Homology

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BLAST of MELO3C019180 vs. TrEMBL
Match: A0A0A0L2J4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G099560 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.3e-08
Identity = 36/55 (65.45%), Postives = 41/55 (74.55%), Query Frame = 1


Query: 1  MDGFYVLEPPIAREEEVDGITSLSEATSTEST--EHTSNRYSKKRARSVDPSVAA 54
          MD FYVLEPPI   EEVDG  S+SEAT+   +   HTSNR+SKKRARSVD  VA+
Sbjct: 1  MDSFYVLEPPITGGEEVDGYASMSEATTNTQSYRAHTSNRFSKKRARSVDLLVAS 55

[Close]

BLAST of MELO3C019180 vs. NCBI nr
Match: gi|700201062|gb|KGN56195.1| (hypothetical protein Csa_3G099560 [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 1.9e-08
Identity = 36/55 (65.45%), Postives = 41/55 (74.55%), Query Frame = 1


Query: 1  MDGFYVLEPPIAREEEVDGITSLSEATSTEST--EHTSNRYSKKRARSVDPSVAA 54
          MD FYVLEPPI   EEVDG  S+SEAT+   +   HTSNR+SKKRARSVD  VA+
Sbjct: 1  MDSFYVLEPPITGGEEVDGYASMSEATTNTQSYRAHTSNRFSKKRARSVDLLVAS 55

The following BLAST results are available for this feature:

BLAST of MELO3C019180 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2J4_CUCSA	1.3e-08	65.45	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G099560 PE=4 SV=1	[more]

BLAST of MELO3C019180 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700201062\|gb\|KGN56195.1\|	1.9e-08	65.45	hypothetical protein Csa_3G099560 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C019180T1	MELO3C019180T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C019180	Watermelon (97103) v2	mewmbB544
MELO3C019180	Cucumber (Gy14) v1	cgymeB449
MELO3C019180	Cucurbita maxima (Rimu)	cmameB613
MELO3C019180	Cucurbita maxima (Rimu)	cmameB810
MELO3C019180	Cucurbita moschata (Rifu)	cmomeB601
MELO3C019180	Cucurbita moschata (Rifu)	cmomeB794
MELO3C019180	Wild cucumber (PI 183967)	cpimeB331
MELO3C019180	Cucumber (Chinese Long) v2	cumeB272
MELO3C019180	Watermelon (Charleston Gray)	mewcgB534
MELO3C019180	Watermelon (97103) v1	mewmB580
MELO3C019180	Cucurbita pepo (Zucchini)	cpemeB451
MELO3C019180	Cucumber (Gy14) v2	cgybmeB286
MELO3C019180	Cucumber (Chinese Long) v3	cucmeB337