MELO3C019179T3 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C019179T3
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionTranscription initiation factor iib, putative
Locationchr8 : 13850842 .. 13855524 (-)
Sequence length1272
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCCCTTTCAATTTCCCTCCCTCATCGTCGAAATCTATTACCGACGCCTCGCCTGAGCAGCCAATACCAATTTCTCCCTGGAACCAACATTCATCTCTCTTCTGCTCTCCAATTCCCCGCTTGCTCAAGCTTTTTTAGGGTTTAGAAGAGCCCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGCTGGTTGTGAACAATGTCTGATGCGTTCTGCTCTGACTGCAAGCGTCAGACTGAGGTTGTTTTTGACCATTCCGCCGGAGATACGGTGTGTTCCGAGTGTGGTCTTGTCCTTGAATCCCACTCCATCGATGAGACCTCCGAGTGGAGGACTTTTGCCAATGAGTCTGGGGATAACGACCCGGTTCGTGTTGGTGGACCCACAAATCCTCTTTTGGCTGATGGTGGACTTTCCACGGTGATTGCGAAGCCTAATGGTACCACTGGGGAGTTCTTGTCCTCGTCTTTGGGTCGGTGGCAGAATCGTGGCTCCAATCCAGATCGAGGGTTGATTCTTGCTTTCAAGACCATTGCTACTATGTCTGATAGGTAAGGGGGTTTGATGTTTTGGATGCTGCTGAGGAAATTGGTATTTGTTGGATGTTTCTTGATTGAGCTGAATCTTGATTTCCTTTCCTAACCCATATAGGCTTATACAGATCGAATTGGGACTGTGGAGGGGTGGGAATTGGGAAATCTTACTAAATTAAGGTTTTTTTGTATTCGTGGGGGAACTTTTGATGATGGATACAAATTTTGTGAACTGATTGTTGGCTTGGTGGTTGTACAGGATTCGGGTCATGCAGCTGGGGCTATTGGAAAAACTTTAGTCTTTTAGAGAAACGTTTCTTTCTTTCTTGGTAGAGAAATCGATTAAAATCTTTGTATTGGTGCTCTTATCTTATTTATGGAATTGACTAATCAGAATTTAGAAACTTAGAGTTGAGCTAAGAAGTCGTGTAAATGAAAAGCCTATCTGGGTAGATCTTTTGGAGGAGAATATCGACTTGAAACATATACTCATGCTGTAGATGTGCATCTATGTAGTTGCGGTGAATTTGATAAAAAGGTTCTTCAGGTCTGGAATGCCAAGGAACAAAACGTTTTGAGTTGAATTTTCTTGTATCTTTTGTTTATTTCTTCAATATTCTGGCAAGCGACTTTGTTGGTGCAATGAGAATGGTATATGTTAAGTTCACTCAATTAGGTCGATTTACCTTGTTGCTTTGGAGTTTCGAGTTTTTTTATTCATATTGGGAGAAGCCACTTCTCTAATTGGAATTAAGTAGTGAATAAACTTAGTGTATACTCTTTCCATCTAATGTTTGAAAATTTTCTGTTATCGGCCTTGCCACAAGATGGTCATGGATCGTTCTATGGGATTTTCGTATTTTAGTTCATTTTATGGTCTTCTTGCACTGTAATTATAGTTTTTGGGATGCTTAGTATAAGTAACCCAACTTTGAGTTATGATAAAGATGAGACTGATTCATAATGTTTAATAAATATATGAGTTTGTCACATTTAGAAAGGTCTAATACCGCCAGCTTTATTGTGTTTCAGGTTGGGCCTTGTTGCAACCATAAAGGTATGCAGTTTTCGACCCATTATGACATAATTCCACGAGTTTCCATTTTTTGTATTTTCTAAAAGCATTCAGGTTAGTTGTCAGTATAGAATGATCATGCAGTGTTCTCAAGGTTTGAGATAATGTATGTTTCATAGTTTTTGTTAAACATTTATCTGGAAGTGATGCACAATGAATGAATGACCAAGGAATGGTCAGATACATACGGTTCAAGTTCACATACCCGCACACACACATATAGGTAAGAAACAACACTCAATATGAAAAAGGAGGTTATAAAGGATGGGAGATGTGGTCCCTGCCTAGCTATGTGGATTACAAAACGCTTCCCAGTTGGCATAAATTTGAAGAAAAGGTAATGAAAAACATTATAAAAGATTAACACCAGCATAAAGTGTAAACTTTGGACGTGGGATTCAAGACCATATGAATCGTGTGATGTAAGCCTAGAATAGAAAATAACCAAATTTTTCAGAGAGAGAAAATTCTATAATTTCTAGAGCCCTCCTCCCTACTTCTAACCAAGATTATGCATGCCTCAATAGTTGAGTCACTTTACGCACTGGTTTTTACTGGTAGTAGCCTCAGGACTACAAGTGTGTTATGACTTCATTTTGTTATTTGTAGTAACAAAACACATCTTGAAGGTAGAATGCTGTCGAGCAAGGGTAGAAAGCAGCAAAAGGAAGAGGAATTTGTGGAAAATTAACAATAGAATATTGAGACTGAATAAGGAAGTTGAAACTCCAAAGCCATAACCATTTAGCTAAAAGGGCTTTGTTACTCATCGTAAGGTTTCCAATTTCCAAACCTCTGAAAGACACTGGTCTCTCAATAACCTCATCTAATCAAACCTTTTCCTCTTCTTTAACAAATCCCTTCCTAGAGGAAGTCACACATGAATCTCTCCAAACACTTCACACCTCACACCTCACACCTCACACAGAGCCCTGAAAAGGGAGAAGAATAAATGAGCATTAAGTCCTGCCTATGAGAGACTGTTTTATGTACACTTTCATTAATTCTCATCTTTATTCAGTCTATAACAGACGTTGATTTATCACAAGTGCAGTGTGTTTCTTAAGAAAGGAACTTGGTAGAATTTTTAAAAAACACATTGTAGCTGTGATAAATCAGTGTATGTGATAGATTGAGTAAAGACAGGAATTAATTGTGTTTAAACATGACTAATGAATTTATACCACGTAGGTATTTTAATAAAATATTAAATTTATATAAGAAAAAGTCTTTATGAGGACAAATGCATAAGGAAGATAAGGAAGAGGCTTGTGGCATCTGGAAGAATGAATATCGGTGATTGAGTGAGAAAGTTGAGCATTATCAGAAGGAAACGTAGGAACAGTAAATCACACTGGTTAGTGGGTGAAAGAAAAAGAAATTATCTATAATATTGAAGAATTCTCTAGAGCAGCCAAGTAGATAATACTTGTATAAAGAAGTGTCTGTTACTCTTTCTACCTTTTGAGTAGATGAGATTCACTGAGTTTAACATCACAATAAGGAGAGCGTTAGAGTTTTTTGCCTGGGGGTGGAGAGTTTGGGTGTCTACTAAATTTTAAGTTTTGATGTTGCAATTGTACTTTTGTCTTTCCTATAAAGATGTATTTGTAGAAGGGTCTTTTTCTCGTTCCTTTTTTTTCCATGGTGTTTTTTGCATTCTCTATGTGAATAAATAGTTTTTGATTAAAAAATAGATTTGCTTCCTATCAAAAGAGGTGATTCAATGTTTTACATTTGATTGACTAAGAGGTCATAGGTTTAATCTATGGTTAGCCACTGCCTAGGAATTAATTTTCTATGAGTTTCTTTGACATCCAAATGTTGTAGGATTAGGCAAGTGATGCGAGATTAGTTGAGGTGCAAGTATAGCTGGCTCGAACACTGACACATATAAAAAATAATAATTACATATGATATGCTATTGGATCCAGATGCAATATTTAAGAAAAAAATATTCAAGTTTTTCTACTTATGATTTGGTAATGTTGGAATTATGTTTATTCATTTTGTTAAATGTTTGTGAATTTATTCTTCACAGTTGCTACATGCTGTTACAGTTCTAATGTGATTGTAGTTGCAACCATTGATAGGATAACTTGTGAAGATTACAATCTGAAGTCTTTGACTTTCTGACCAAGTTACTTTATAGTGAAATTATTCCTCCAAACTGTTAATTGCTGTAGACTAATTATTCAAACAAGGAAATTTCCTCTGGTCCAGAATAGGATAACATGAAATTATACACCTGTATTATATGATTTGGAGATCAGCTTAGTTTTAGATTGCTTTGCTCTATGTCATTCATTTCTCTAGCAAGTGAACTTTGAAAATGTTTAATTTTCTTAAATGATTTTCTCATTTATTAATTATATACAGGATCGGGCCAATGAGATATATAAAAGAGTAGAAGATCAAAAATCTAGTAGAGGAAGAAATCAAGATGCTTTATTGGCTGCTTGCTTATATATTGCTTGTCGACAAGAAGATAAACCCCGCACAGTCAAGGGTATTGATCCTTTGATATCTGGAGCATTTGTAGTTTAATTTCTGTACTTAACTAACCATGCTGATTTTGATTAGAAATTTGCTCTGTTGCCAATGGGGCAACAAAGAAGGAGATTGGGCGAGCAAAAGAATACATTGTGAAACAGTTGGGGTTGGAGACGGGTCAGTCTGTAGAGATGGGAACAATTCATGCTGGAGACTTTATGGTGAGGCTTTTGGTGAAAAAAATTCACTTCAAGTTTTCTGAAATTTGATCATGGACAACATGTCATTTGTTTCTTCTTATGTCATTTCTTTCTTAAACGGATATAGAGGCGTTTTTGTTCAAATCTTGGGATGAATAATCAAGCTGTTAAAGCTGCCCAAGAAGCTGTACAGAAATCTGAAGAGTTTGATATTAGGTAATGTTTGTTTCCTTTGGTTGTTGTTGAGCTTTCTTCATGTTTATTTGTTTGGGTGGTTAGTTAAGTATTCCCTGAACTCTGAGTAGCTACTTCTGTGTTTATGACAAAATTCACCCTGTTAACAACTACAGATCCCTCTTCTGGTCGGGCAGTAGTAGCCAATGTA

mRNA sequence

TCCCCTTTCAATTTCCCTCCCTCATCGTCGAAATCTATTACCGACGCCTCGCCTGAGCAGCCAATACCAATTTCTCCCTGGAACCAACATTCATCTCTCTTCTGCTCTCCAATTCCCCGCTTGCTCAAGCTTTTTTAGGGTTTAGAAGAGCCCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGCTGGTTGTGAACAATGTCTGATGCGTTCTGCTCTGACTGCAAGCGTCAGACTGAGGTTGTTTTTGACCATTCCGCCGGAGATACGGTGTGTTCCGAGTGTGGTCTTGTCCTTGAATCCCACTCCATCGATGAGACCTCCGAGTGGAGGACTTTTGCCAATGAGTCTGGGGATAACGACCCGGTTCGTGTTGGTGGACCCACAAATCCTCTTTTGGCTGATGGTGGACTTTCCACGGTGATTGCGAAGCCTAATGGTACCACTGGGGAGTTCTTGTCCTCGTCTTTGGGTCGGTGGCAGAATCGTGGCTCCAATCCAGATCGAGGGTTGATTCTTGCTTTCAAGACCATTGCTACTATGTCTGATAGGTTGGGCCTTGTTGCAACCATAAAGGATCGGGCCAATGAGATATATAAAAGAGTAGAAGATCAAAAATCTAGTAGAGGAAGAAATCAAGATGCTTTATTGGCTGCTTGCTTATATATTGCTTGTCGACAAGAAGATAAACCCCGCACAGTCAAGGGTATTGATCCTTTGATATCTGGAGCATTTGTAGTTTAATTTCTGTACTTAACTAACCATGCTGATTTTGATTAGAAATTTGCTCTGTTGCCAATGGGGCAACAAAGAAGGAGATTGGGCGAGCAAAAGAATACATTGTGAAACAGTTGGGGTTGGAGACGGGTCAGTCTGTAGAGATGGGAACAATTCATGCTGGAGACTTTATGGTGAGGCTTTTGGTGAAAAAAATTCACTTCAAGTTTTCTGAAATTTGATCATGGACAACATGTCATTTGTTTCTTCTTATGTCATTTCTTTCTTAAACGGATATAGAGGCGTTTTTGTTCAAATCTTGGGATGAATAATCAAGCTGTTAAAGCTGCCCAAGAAGCTGTACAGAAATCTGAAGAGTTTGATATTAGGTAATGTTTGTTTCCTTTGGTTGTTGTTGAGCTTTCTTCATGTTTATTTGTTTGGGTGGTTAGTTAAGTATTCCCTGAACTCTGAGTAGCTACTTCTGTGTTTATGACAAAATTCACCCTGTTAACAACTACAGATCCCTCTTCTGGTCGGGCAGTAGTAGCCAATGTA

Coding sequence (CDS)

ATGTCTGATGCGTTCTGCTCTGACTGCAAGCGTCAGACTGAGGTTGTTTTTGACCATTCCGCCGGAGATACGGTGTGTTCCGAGTGTGGTCTTGTCCTTGAATCCCACTCCATCGATGAGACCTCCGAGTGGAGGACTTTTGCCAATGAGTCTGGGGATAACGACCCGGTTCGTGTTGGTGGACCCACAAATCCTCTTTTGGCTGATGGTGGACTTTCCACGGTGATTGCGAAGCCTAATGGTACCACTGGGGAGTTCTTGTCCTCGTCTTTGGGTCGGTGGCAGAATCGTGGCTCCAATCCAGATCGAGGGTTGATTCTTGCTTTCAAGACCATTGCTACTATGTCTGATAGGTTGGGCCTTGTTGCAACCATAAAGGATCGGGCCAATGAGATATATAAAAGAGTAGAAGATCAAAAATCTAGTAGAGGAAGAAATCAAGATGCTTTATTGGCTGCTTGCTTATATATTGCTTGTCGACAAGAAGATAAACCCCGCACAGTCAAGGGTATTGATCCTTTGATATCTGGAGCATTTGTAGTTTAA

Protein sequence

MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMVRLLVKKIHFKFSEI*
Homology
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BLAST of MELO3C019179T3 vs. Swiss-Prot
Match: TF2B2_ARATH (Transcription initiation factor IIB-2 OS=Arabidopsis thaliana GN=TFIIB2 PE=2 SV=1)

HSP 1 Score: 418.7 bits (1075), Expect = 4.1e-116
Identity = 205/215 (95.35%), Postives = 210/215 (97.67%), Query Frame = 1 

Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDAFCSDCKR TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MSDAFCSDCKRHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLADGGL+TVI+KPNG++G+FLSSSLGRWQNRGSNPDRGLI+AFKTIATM+DRLG
Sbjct: 61  GPTNPLLADGGLTTVISKPNGSSGDFLSSSLGRWQNRGSNPDRGLIVAFKTIATMADRLG 120

Query: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
           LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK
Sbjct: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180

Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMVR 216
           KEIGRAKEYIVKQLGLETGQ VEMGTIHAGDFM R
Sbjct: 181 KEIGRAKEYIVKQLGLETGQLVEMGTIHAGDFMRR 215

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BLAST of MELO3C019179T3 vs. Swiss-Prot
Match: TF2B_SOYBN (Transcription initiation factor IIB OS=Glycine max GN=TFIIB1 PE=2 SV=1)

HSP 1 Score: 406.4 bits (1043), Expect = 2.1e-112
Identity = 204/216 (94.44%), Postives = 204/216 (94.44%), Query Frame = 1 

Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDP RVG
Sbjct: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPNRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTTG-EFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRL 120
           GP+NPLL DGGLSTVIAKPNG  G EFLSSSLGRWQNRGSNPDR LI AFKTIATMSDRL
Sbjct: 61  GPSNPLLTDGGLSTVIAKPNGGGGGEFLSSSLGRWQNRGSNPDRALIQAFKTIATMSDRL 120

Query: 121 GLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 180
           GLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT
Sbjct: 121 GLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 180

Query: 181 KKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMVR 216
           KKEIGRAKEYIVKQLGLE G +VEMGTIHAGDFM R
Sbjct: 181 KKEIGRAKEYIVKQLGLENGNAVEMGTIHAGDFMRR 216

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BLAST of MELO3C019179T3 vs. Swiss-Prot
Match: TF2B_ORYSJ (Transcription initiation factor IIB OS=Oryza sativa subsp. japonica GN=TFIIB PE=1 SV=1)

HSP 1 Score: 388.3 bits (996), Expect = 6.0e-107
Identity = 187/215 (86.98%), Postives = 199/215 (92.56%), Query Frame = 1 

Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSD+FC DCK+ TEV FDHSAGDTVC+ECGLVLE+HS+DETSEWRTFANES DNDPVRVG
Sbjct: 1   MSDSFCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESSDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLL DGGLSTVIAKPNG  GEFLSSSLGRWQNRGSNPDR LILAF+TIA M+DRLG
Sbjct: 61  GPTNPLLTDGGLSTVIAKPNGAQGEFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRLG 120

Query: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
           LVATIKDRANEIYK+VED KS RGRNQDA+LAACLYIACRQED+PRTVKEICSVANGATK
Sbjct: 121 LVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATK 180

Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMVR 216
           KEIGRAKE+IVKQL +E GQS+EMGTIHAGDF+ R
Sbjct: 181 KEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRR 215

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BLAST of MELO3C019179T3 vs. Swiss-Prot
Match: TF2B1_ARATH (Transcription initiation factor IIB-1 OS=Arabidopsis thaliana GN=TFIIB1 PE=1 SV=1)

HSP 1 Score: 379.0 bits (972), Expect = 3.6e-104
Identity = 182/215 (84.65%), Postives = 200/215 (93.02%), Query Frame = 1 

Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDA+C+DCK++TE+V DHSAGDT+CSECGLVLESHSIDETSEWRTFANES ++DP RVG
Sbjct: 1   MSDAYCTDCKKETELVVDHSAGDTLCSECGLVLESHSIDETSEWRTFANESSNSDPNRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLAD  L+TVIAKPNG++G+FLSSSLGRWQNR SN DRGLI AFKTIATMS+RLG
Sbjct: 61  GPTNPLLADSALTTVIAKPNGSSGDFLSSSLGRWQNRNSNSDRGLIQAFKTIATMSERLG 120

Query: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
           LVATIKDRANE+YKR+EDQKSSRGRNQDAL AACLYIACRQEDKPRT+KEIC +ANGATK
Sbjct: 121 LVATIKDRANELYKRLEDQKSSRGRNQDALYAACLYIACRQEDKPRTIKEICVIANGATK 180

Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMVR 216
           KEIGRAK+YIVK LGLE GQSV++GTIHAGDFM R
Sbjct: 181 KEIGRAKDYIVKTLGLEPGQSVDLGTIHAGDFMRR 215

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BLAST of MELO3C019179T3 vs. Swiss-Prot
Match: TF2B_DROME (Transcription initiation factor IIB OS=Drosophila melanogaster GN=TfIIB PE=2 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.1e-44
Identity = 105/212 (49.53%), Postives = 136/212 (64.15%), Query Frame = 1 

Query: 6   CSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
           C     ++ ++ D+ AGD +CSECGLV+    ID  SEWRTF+NE    DP RVGGP NP
Sbjct: 13  CCYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENP 72

Query: 66  LLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGLVA 125
           LL+ G LST+I    G+   F +    ++QNR   S+ DR LI AFK I++M+DR+ L  
Sbjct: 73  LLSGGDLSTIIGPGTGSAS-FDAFGAPKYQNRRTMSSSDRSLISAFKEISSMADRINLPK 132

Query: 126 TIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEI 185
           TI DRAN ++K+V D K+ +GR+ DA  +ACLYIACRQE  PRT KEIC+V+   +KKEI
Sbjct: 133 TIVDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEI 192

Query: 186 GRAKEYIVKQLGLETGQSVEMGTIHAGDFMVR 216
           GR  +  +K   LET  SV++  I   DFM R
Sbjct: 193 GRCFKLTLK--ALET--SVDL--ITTADFMCR 216

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BLAST of MELO3C019179T3 vs. TrEMBL
Match: A0A0A0KYQ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G415910 PE=4 SV=1)

HSP 1 Score: 431.8 bits (1109), Expect = 5.2e-118
Identity = 214/215 (99.53%), Postives = 214/215 (99.53%), Query Frame = 1 

Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
           LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK
Sbjct: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180

Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMVR 216
           KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFM R
Sbjct: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRR 215

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BLAST of MELO3C019179T3 vs. TrEMBL
Match: E6NU95_JATCU (JHL06B08.6 protein OS=Jatropha curcas GN=JHL06B08.6 PE=4 SV=1)

HSP 1 Score: 425.6 bits (1093), Expect = 3.7e-116
Identity = 210/215 (97.67%), Postives = 212/215 (98.60%), Query Frame = 1 

Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           M DAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MGDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLADGGLSTVIAKPNG +GEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61  GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
           LVATIKDRANEIYK+VEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK
Sbjct: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180

Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMVR 216
           KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFM R
Sbjct: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRR 215

[Close]
BLAST of MELO3C019179T3 vs. TrEMBL
Match: A0A0D2MB30_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G146300 PE=4 SV=1)

HSP 1 Score: 424.5 bits (1090), Expect = 8.3e-116
Identity = 209/218 (95.87%), Postives = 213/218 (97.71%), Query Frame = 1 

Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           M+DAFCSDCKR TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MADAFCSDCKRNTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLADGGLSTVIAKPNG +GEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61  GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
           LVATIKDRANEIYK+VEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK
Sbjct: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180

Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMVRLLV 219
           KEIGRAKEYIVKQLGLETGQSVEMG IHAGDFMV + V
Sbjct: 181 KEIGRAKEYIVKQLGLETGQSVEMGAIHAGDFMVSVFV 218

[Close]
BLAST of MELO3C019179T3 vs. TrEMBL
Match: B9T8A1_RICCO (Transcription initiation factor iib, putative OS=Ricinus communis GN=RCOM_0110800 PE=4 SV=1)

HSP 1 Score: 424.5 bits (1090), Expect = 8.3e-116
Identity = 209/215 (97.21%), Postives = 212/215 (98.60%), Query Frame = 1 

Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           M DA+CSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MGDAYCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLADGGLSTVIAKPNG +GEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61  GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
           LVATIKDRANEIYK+VEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK
Sbjct: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180

Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMVR 216
           KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFM R
Sbjct: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRR 215

[Close]
BLAST of MELO3C019179T3 vs. TrEMBL
Match: A0A061EVW0_THECC (Cyclin-like family protein isoform 1 OS=Theobroma cacao GN=TCM_024589 PE=4 SV=1)

HSP 1 Score: 424.1 bits (1089), Expect = 1.1e-115
Identity = 209/215 (97.21%), Postives = 212/215 (98.60%), Query Frame = 1 

Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           M+DAFCSDCKR TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MADAFCSDCKRHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLADGGLSTVIAKPNG +GEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61  GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
           LVATIKDRANEIYK+VEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK
Sbjct: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180

Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMVR 216
           KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFM R
Sbjct: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRR 215

[Close]
BLAST of MELO3C019179T3 vs. TAIR10
Match: AT3G10330.1 (AT3G10330.1 Cyclin-like family protein)

HSP 1 Score: 418.7 bits (1075), Expect = 2.3e-117
Identity = 205/215 (95.35%), Postives = 210/215 (97.67%), Query Frame = 1 

Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDAFCSDCKR TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MSDAFCSDCKRHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLADGGL+TVI+KPNG++G+FLSSSLGRWQNRGSNPDRGLI+AFKTIATM+DRLG
Sbjct: 61  GPTNPLLADGGLTTVISKPNGSSGDFLSSSLGRWQNRGSNPDRGLIVAFKTIATMADRLG 120

Query: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
           LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK
Sbjct: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180

Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMVR 216
           KEIGRAKEYIVKQLGLETGQ VEMGTIHAGDFM R
Sbjct: 181 KEIGRAKEYIVKQLGLETGQLVEMGTIHAGDFMRR 215

[Close]
BLAST of MELO3C019179T3 vs. TAIR10
Match: AT2G41630.1 (AT2G41630.1 transcription factor IIB)

HSP 1 Score: 379.0 bits (972), Expect = 2.0e-105
Identity = 182/215 (84.65%), Postives = 200/215 (93.02%), Query Frame = 1 

Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDA+C+DCK++TE+V DHSAGDT+CSECGLVLESHSIDETSEWRTFANES ++DP RVG
Sbjct: 1   MSDAYCTDCKKETELVVDHSAGDTLCSECGLVLESHSIDETSEWRTFANESSNSDPNRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLAD  L+TVIAKPNG++G+FLSSSLGRWQNR SN DRGLI AFKTIATMS+RLG
Sbjct: 61  GPTNPLLADSALTTVIAKPNGSSGDFLSSSLGRWQNRNSNSDRGLIQAFKTIATMSERLG 120

Query: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
           LVATIKDRANE+YKR+EDQKSSRGRNQDAL AACLYIACRQEDKPRT+KEIC +ANGATK
Sbjct: 121 LVATIKDRANELYKRLEDQKSSRGRNQDALYAACLYIACRQEDKPRTIKEICVIANGATK 180

Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMVR 216
           KEIGRAK+YIVK LGLE GQSV++GTIHAGDFM R
Sbjct: 181 KEIGRAKDYIVKTLGLEPGQSVDLGTIHAGDFMRR 215

[Close]
BLAST of MELO3C019179T3 vs. TAIR10
Match: AT3G29380.1 (AT3G29380.1 Cyclin-like family protein)

HSP 1 Score: 159.8 bits (403), Expect = 1.9e-39
Identity = 101/240 (42.08%), Postives = 134/240 (55.83%), Query Frame = 1 

Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANES--GDNDPVR 60
           M +  C DCKR T +V DHS+GDT+CSECGLVLE+H I+ + EWRTFA++    D DP R
Sbjct: 1   MEEETCLDCKRPTIMVVDHSSGDTICSECGLVLEAHIIEYSQEWRTFASDDNHSDRDPNR 60

Query: 61  VGGPTNPLLADGGLSTVIAKPNGTTGEFLS----SSLGRWQNRGSNPDRGLI-LAFKTIA 120
           VG  TNP L  G L T+I KP  T    LS    S+L R  N+  N +  LI  AF+ I 
Sbjct: 61  VGAATNPFLKSGDLVTIIEKPKETASSVLSKDDISTLFRAHNQVKNHEEDLIKQAFEEIQ 120

Query: 121 TMSDRLGLVATIKDRANEIYKRVE---DQKSSRGRNQDALLAACLYIACRQEDKPRTVKE 180
            M+D L L   I  RA EI  + +   + K  RG+  +A+ AA +  ACR+    RT+KE
Sbjct: 121 RMTDALDLDIVINSRACEIVSKYDGHANTKLRRGKKLNAICAASVSTACRELQLSRTLKE 180

Query: 181 ICSVANGATKKEIGRAKEYIVKQL--GLETGQSVEMGTIHAGDFMVRLLVKKIHFKFSEI 229
           I  VANG  KK+I R +  ++K++    +T  S     I+ G+ +VR    K+     EI
Sbjct: 181 IAEVANGVDKKDI-RKESLVIKRVLESHQTSVSASQAIINTGE-LVRRFCSKLDISQREI 238

[Close]
BLAST of MELO3C019179T3 vs. TAIR10
Match: AT4G10680.1 (AT4G10680.1 transcription factor IIB (TFIIB) family protein)

HSP 1 Score: 99.4 bits (246), Expect = 3.1e-21
Identity = 69/196 (35.20%), Postives = 100/196 (51.02%), Query Frame = 1 

Query: 3   DAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
           D  C +CKR TE V ++  GDT+C ECG V+E++ ID+                   G  
Sbjct: 4   DGICLECKRPTETVVNYKNGDTICIECGHVIENNIIDDLD-----------------GAS 63

Query: 63  TNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQN---RGSNPDRGLILAFKTIATMSDRL 122
           TNP L  G L T+I K +G +   L+S L R QN   +    +  + +A+  I  M++ L
Sbjct: 64  TNPNLKSGHLPTIIFKLSGKSSS-LASKLRRTQNEMIKNKQEEDVIKIAYAEIERMTEAL 123

Query: 123 GLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 182
           GL   I + A +I  +++ +    G++   L AA +  ACRQ + P+T+KEI +VAN   
Sbjct: 124 GLTFGISNTACKILSKLDKKNLRGGKSLRGLCAASVSRACRQVNIPKTLKEISAVAN-VD 176

Query: 183 KKEIGRAKEYIVKQLG 196
            KEI +A    VK LG
Sbjct: 184 MKEINKA----VKLLG 176

[Close]
BLAST of MELO3C019179T3 vs. TAIR10
Match: AT3G57370.1 (AT3G57370.1 Cyclin family protein)

HSP 1 Score: 74.3 bits (181), Expect = 1.1e-13
Identity = 69/240 (28.75%), Postives = 100/240 (41.67%), Query Frame = 1 

Query: 6   CSDCKRQTEVVFDHSAGDTVCSECGL------------VLESHSIDETSEWRTFANESG- 65
           C  CK Q  VV DH    T C  CGL            V E+ ++       T  + +  
Sbjct: 9   CRRCK-QINVVTDHVTRRTRCFGCGLEFKYRPIGDLSPVAENDTVRLPDPTNTLLSNTDL 68

Query: 66  -------------DNDPVRVGGPTNPLLADGGLSTVIAKPNGTTGEFLS----------- 125
                        D+  + +G  + P L    ++T     NG++ +FLS           
Sbjct: 69  SIVTTEHKNGSFDDSLSLNLGNSSKPRLDPVSIATAKLM-NGSSNDFLSLGTSQNSETIT 128

Query: 126 --------SSLGRWQNRGSNP------DRGLILAFKTIATMSDRLGLVATIKDRANEIYK 185
                   S LG  Q    +P           L+  +I  +S+ L L ATIK +ANEI+K
Sbjct: 129 ASSDEFLFSDLGHLQKFSFDPLSMASTKPNKALSIVSIEAISNGLKLPATIKGQANEIFK 188

Query: 186 RVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQL 195
            VE    +RG+ ++ L AAC+YIACR  D  RT++EI   AN A+  +I     +I ++L
Sbjct: 189 VVESY--ARGKERNVLFAACIYIACRDNDMTRTMREISRFANKASISDISETVGFIAEKL 244

[Close]
BLAST of MELO3C019179T3 vs. NCBI nr
Match: gi|449465789|ref|XP_004150610.1| (PREDICTED: transcription initiation factor IIB-2 [Cucumis sativus])

HSP 1 Score: 431.8 bits (1109), Expect = 7.5e-118
Identity = 214/215 (99.53%), Postives = 214/215 (99.53%), Query Frame = 1 

Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
           LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK
Sbjct: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180

Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMVR 216
           KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFM R
Sbjct: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRR 215

[Close]
BLAST of MELO3C019179T3 vs. NCBI nr
Match: gi|802730051|ref|XP_012086204.1| (PREDICTED: transcription initiation factor IIB-2 [Jatropha curcas])

HSP 1 Score: 425.6 bits (1093), Expect = 5.4e-116
Identity = 210/215 (97.67%), Postives = 212/215 (98.60%), Query Frame = 1 

Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           M DAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MGDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLADGGLSTVIAKPNG +GEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61  GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
           LVATIKDRANEIYK+VEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK
Sbjct: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180

Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMVR 216
           KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFM R
Sbjct: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRR 215

[Close]
BLAST of MELO3C019179T3 vs. NCBI nr
Match: gi|470137151|ref|XP_004304334.1| (PREDICTED: transcription initiation factor IIB [Fragaria vesca subsp. vesca])

HSP 1 Score: 424.9 bits (1091), Expect = 9.2e-116
Identity = 210/215 (97.67%), Postives = 212/215 (98.60%), Query Frame = 1 

Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDA+CSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MSDAYCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLADGGLSTVIAKPNG +GEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61  GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
           LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK
Sbjct: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180

Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMVR 216
           KEIGRAKEYIVKQLGLE GQSVEMGTIHAGDFM R
Sbjct: 181 KEIGRAKEYIVKQLGLEKGQSVEMGTIHAGDFMRR 215

[Close]
BLAST of MELO3C019179T3 vs. NCBI nr
Match: gi|255588003|ref|XP_002534470.1| (PREDICTED: transcription initiation factor IIB-2 [Ricinus communis])

HSP 1 Score: 424.5 bits (1090), Expect = 1.2e-115
Identity = 209/215 (97.21%), Postives = 212/215 (98.60%), Query Frame = 1 

Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           M DA+CSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MGDAYCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLADGGLSTVIAKPNG +GEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61  GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
           LVATIKDRANEIYK+VEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK
Sbjct: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180

Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMVR 216
           KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFM R
Sbjct: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRR 215

[Close]
BLAST of MELO3C019179T3 vs. NCBI nr
Match: gi|763747398|gb|KJB14837.1| (hypothetical protein B456_002G146300 [Gossypium raimondii])

HSP 1 Score: 424.5 bits (1090), Expect = 1.2e-115
Identity = 209/218 (95.87%), Postives = 213/218 (97.71%), Query Frame = 1 

Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           M+DAFCSDCKR TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MADAFCSDCKRNTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLADGGLSTVIAKPNG +GEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61  GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
           LVATIKDRANEIYK+VEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK
Sbjct: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180

Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMVRLLV 219
           KEIGRAKEYIVKQLGLETGQSVEMG IHAGDFMV + V
Sbjct: 181 KEIGRAKEYIVKQLGLETGQSVEMGAIHAGDFMVSVFV 218

The following BLAST results are available for this feature:
BLAST of MELO3C019179T3 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TF2B2_ARATH4.1e-11695.35Transcription initiation factor IIB-2 OS=Arabidopsis thaliana GN=TFIIB2 PE=2 SV=... [more]
TF2B_SOYBN2.1e-11294.44Transcription initiation factor IIB OS=Glycine max GN=TFIIB1 PE=2 SV=1[more]
TF2B_ORYSJ6.0e-10786.98Transcription initiation factor IIB OS=Oryza sativa subsp. japonica GN=TFIIB PE=... [more]
TF2B1_ARATH3.6e-10484.65Transcription initiation factor IIB-1 OS=Arabidopsis thaliana GN=TFIIB1 PE=1 SV=... [more]
TF2B_DROME1.1e-4449.53Transcription initiation factor IIB OS=Drosophila melanogaster GN=TfIIB PE=2 SV=... [more]
BLAST of MELO3C019179T3 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KYQ5_CUCSA5.2e-11899.53Uncharacterized protein OS=Cucumis sativus GN=Csa_4G415910 PE=4 SV=1[more]
E6NU95_JATCU3.7e-11697.67JHL06B08.6 protein OS=Jatropha curcas GN=JHL06B08.6 PE=4 SV=1[more]
A0A0D2MB30_GOSRA8.3e-11695.87Uncharacterized protein OS=Gossypium raimondii GN=B456_002G146300 PE=4 SV=1[more]
B9T8A1_RICCO8.3e-11697.21Transcription initiation factor iib, putative OS=Ricinus communis GN=RCOM_011080... [more]
A0A061EVW0_THECC1.1e-11597.21Cyclin-like family protein isoform 1 OS=Theobroma cacao GN=TCM_024589 PE=4 SV=1[more]
BLAST of MELO3C019179T3 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G10330.12.3e-11795.35 Cyclin-like family protein[more]
AT2G41630.12.0e-10584.65 transcription factor IIB[more]
AT3G29380.11.9e-3942.08 Cyclin-like family protein[more]
AT4G10680.13.1e-2135.20 transcription factor IIB (TFIIB) family protein[more]
AT3G57370.11.1e-1328.75 Cyclin family protein[more]
BLAST of MELO3C019179T3 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449465789|ref|XP_004150610.1|7.5e-11899.53PREDICTED: transcription initiation factor IIB-2 [Cucumis sativus][more]
gi|802730051|ref|XP_012086204.1|5.4e-11697.67PREDICTED: transcription initiation factor IIB-2 [Jatropha curcas][more]
gi|470137151|ref|XP_004304334.1|9.2e-11697.67PREDICTED: transcription initiation factor IIB [Fragaria vesca subsp. vesca][more]
gi|255588003|ref|XP_002534470.1|1.2e-11597.21PREDICTED: transcription initiation factor IIB-2 [Ricinus communis][more]
gi|763747398|gb|KJB14837.1|1.2e-11595.87hypothetical protein B456_002G146300 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000812TFIIB
IPR013137Znf_TFIIB
IPR013150TFIIB_cyclin
IPR013763Cyclin-like
IPR023486TFIIB_CS
Vocabulary: Biological Process
TermDefinition
GO:0006352DNA-templated transcription, initiation
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0017025TBP-class protein binding
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006352 DNA-templated transcription, initiation
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0009960 endosperm development
biological_process GO:0010183 pollen tube guidance
biological_process GO:0080092 regulation of pollen tube growth
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation
biological_process GO:0006366 transcription from RNA polymerase II promoter
cellular_component GO:0005634 nucleus
cellular_component GO:0005840 ribosome
molecular_function GO:0017025 TBP-class protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003743 translation initiation factor activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C019179MELO3C019179gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C019179T3.cds3MELO3C019179T3.cds3CDS
MELO3C019179T3.cds2MELO3C019179T3.cds2CDS
MELO3C019179T3.cds1MELO3C019179T3.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C019179T3MELO3C019179T3-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000812Transcription factor TFIIBPRINTSPR00685TIFACTORIIBcoord: 55..76
score: 2.8E-41coord: 179..194
score: 2.8E-41coord: 41..54
score: 2.8E-41coord: 152..171
score: 2.8E-41coord: 19..39
score: 2.8
IPR000812Transcription factor TFIIBPANTHERPTHR11618TRANSCRIPTION INITIATION FACTOR IIB-RELATEDcoord: 1..215
score: 2.1E
IPR013137Zinc finger, TFIIB-typePFAMPF08271TF_Zn_Ribboncoord: 6..47
score: 2.8
IPR013137Zinc finger, TFIIB-typePROFILEPS51134ZF_TFIIBcoord: 2..34
score: 9
IPR013150Transcription factor TFIIB, cyclin-like domainPFAMPF00382TFIIBcoord: 112..176
score: 1.2
IPR013763Cyclin-likeGENE3DG3DSA:1.10.472.10coord: 99..198
score: 2.7
IPR013763Cyclin-likeSMARTSM00385cyclin_7coord: 110..192
score: 1.
IPR013763Cyclin-likeunknownSSF47954Cyclin-likecoord: 105..197
score: 7.54
IPR023486Transcription factor TFIIB, conserved sitePROSITEPS00782TFIIBcoord: 144..159
scor
NoneNo IPR availableGENE3DG3DSA:2.20.25.10coord: 4..50
score: 1.2
NoneNo IPR availablePANTHERPTHR11618:SF27CYCLIN FAMILY PROTEIN-RELATEDcoord: 1..215
score: 2.1E
NoneNo IPR availableunknownSSF57783Zinc beta-ribboncoord: 4..50
score: 1.02