MELO3C018913T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C018913T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionDof zinc finger protein DOF5.4
Locationchr7 : 13093497 .. 13093844 (+)
Sequence length348
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACGTTTCGAAACCTCACTCAATTCAAAATTTATCCCAAGGAAAAATGGTTCATCCTCGCTTTCACCCATTAAACGATCGAAACCATCCAAACGCTGTGAGGCTTCATCCAAGGAACCCATACCTGAGGGCTTTGGGAAGAAGATCTCTATCAAGCCAAGAACGCAAGAATCTTCATTCCATTCTCGCTCTATTAGACCTAATTCAGAGAAAGCTCAAAGACCCAAGAGAAGTGTGACAGACGCCACCCTTAAAGCAGATGAGTGGATGAAGCAAGAAGAAAGTATATATCATGGGTTGAGTAATTTGGAACCTGGAATGGGTACAATGAGGCTTGATGGTGACTAG

mRNA sequence

AAACGTTTCGAAACCTCACTCAATTCAAAATTTATCCCAAGGAAAAATGGTTCATCCTCGCTTTCACCCATTAAACGATCGAAACCATCCAAACGCTGTGAGGCTTCATCCAAGGAACCCATACCTGAGGGCTTTGGGAAGAAGATCTCTATCAAGCCAAGAACGCAAGAATCTTCATTCCATTCTCGCTCTATTAGACCTAATTCAGAGAAAGCTCAAAGACCCAAGAGAAGTGTGACAGACGCCACCCTTAAAGCAGATGAGTGGATGAAGCAAGAAGAAAGTATATATCATGGGTTGAGTAATTTGGAACCTGGAATGGGTACAATGAGGCTTGATGGTGACTAG

Coding sequence (CDS)

AAACGTTTCGAAACCTCACTCAATTCAAAATTTATCCCAAGGAAAAATGGTTCATCCTCGCTTTCACCCATTAAACGATCGAAACCATCCAAACGCTGTGAGGCTTCATCCAAGGAACCCATACCTGAGGGCTTTGGGAAGAAGATCTCTATCAAGCCAAGAACGCAAGAATCTTCATTCCATTCTCGCTCTATTAGACCTAATTCAGAGAAAGCTCAAAGACCCAAGAGAAGTGTGACAGACGCCACCCTTAAAGCAGATGAGTGGATGAAGCAAGAAGAAAGTATATATCATGGGTTGAGTAATTTGGAACCTGGAATGGGTACAATGAGGCTTGATGGTGACTAG

Protein sequence

KRFETSLNSKFIPRKNGSSSLSPIKRSKPSKRCEASSKEPIPEGFGKKISIKPRTQESSFHSRSIRPNSEKAQRPKRSVTDATLKADEWMKQEESIYHGLSNLEPGMGTMRLDGD*
Homology
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BLAST of MELO3C018913T1 vs. NCBI nr
Match: gi|659072222|ref|XP_008464070.1| (PREDICTED: stress response protein NST1-like [Cucumis melo])

HSP 1 Score: 100.1 bits (248), Expect = 2.6e-18
Identity = 57/113 (50.44%), Postives = 71/113 (62.83%), Query Frame = 1 

Query: 1   KRFETSLNSKFIPRKNGSSSLSPIKRSKPSKRCEASSKEPIPEGFGKKISIKPRTQESSF 60
           K  ETS  SK IP K+ S      K  K SK+ E+SSK+   EG  KKI +KP+TQ SS 
Sbjct: 7   KALETSHTSKLIPEKDASFIQPQAKHLKVSKKPESSSKKSRSEGSRKKILLKPQTQTSSP 66

Query: 61  HSRSIRPNSEKAQRPKRSVTDATLKADEWMKQEESIYHGLSNLEPGMGTMRLD 114
            +  ++P+ E+AQRPK+  TD  L  DE M Q+E+I  GL NLEPGM TM LD
Sbjct: 67  QAHFVKPDLEQAQRPKKDATDFILDIDELMGQKENICKGLPNLEPGMETMWLD 119

The following BLAST results are available for this feature:
BLAST of MELO3C018913T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659072222|ref|XP_008464070.1|2.6e-1850.44PREDICTED: stress response protein NST1-like [Cucumis melo][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C018913MELO3C018913gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C018913T1MELO3C018913T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C018913T1.cds1MELO3C018913T1.cds1CDS