MELO3C018913 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C018913
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionDof zinc finger protein DOF5.4
Locationchr7 : 13093497 .. 13093844 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACGTTTCGAAACCTCACTCAATTCAAAATTTATCCCAAGGAAAAATGGTTCATCCTCGCTTTCACCCATTAAACGATCGAAACCATCCAAACGCTGTGAGGCTTCATCCAAGGAACCCATACCTGAGGGCTTTGGGAAGAAGATCTCTATCAAGCCAAGAACGCAAGAATCTTCATTCCATTCTCGCTCTATTAGACCTAATTCAGAGAAAGCTCAAAGACCCAAGAGAAGTGTGACAGACGCCACCCTTAAAGCAGATGAGTGGATGAAGCAAGAAGAAAGTATATATCATGGGTTGAGTAATTTGGAACCTGGAATGGGTACAATGAGGCTTGATGGTGACTAG

mRNA sequence

AAACGTTTCGAAACCTCACTCAATTCAAAATTTATCCCAAGGAAAAATGGTTCATCCTCGCTTTCACCCATTAAACGATCGAAACCATCCAAACGCTGTGAGGCTTCATCCAAGGAACCCATACCTGAGGGCTTTGGGAAGAAGATCTCTATCAAGCCAAGAACGCAAGAATCTTCATTCCATTCTCGCTCTATTAGACCTAATTCAGAGAAAGCTCAAAGACCCAAGAGAAGTGTGACAGACGCCACCCTTAAAGCAGATGAGTGGATGAAGCAAGAAGAAAGTATATATCATGGGTTGAGTAATTTGGAACCTGGAATGGGTACAATGAGGCTTGATGGTGACTAG

Coding sequence (CDS)

AAACGTTTCGAAACCTCACTCAATTCAAAATTTATCCCAAGGAAAAATGGTTCATCCTCGCTTTCACCCATTAAACGATCGAAACCATCCAAACGCTGTGAGGCTTCATCCAAGGAACCCATACCTGAGGGCTTTGGGAAGAAGATCTCTATCAAGCCAAGAACGCAAGAATCTTCATTCCATTCTCGCTCTATTAGACCTAATTCAGAGAAAGCTCAAAGACCCAAGAGAAGTGTGACAGACGCCACCCTTAAAGCAGATGAGTGGATGAAGCAAGAAGAAAGTATATATCATGGGTTGAGTAATTTGGAACCTGGAATGGGTACAATGAGGCTTGATGGTGACTAG

Protein sequence

KRFETSLNSKFIPRKNGSSSLSPIKRSKPSKRCEASSKEPIPEGFGKKISIKPRTQESSFHSRSIRPNSEKAQRPKRSVTDATLKADEWMKQEESIYHGLSNLEPGMGTMRLDGD*
Homology
[Close]
BLAST of MELO3C018913 vs. NCBI nr
Match: gi|659072222|ref|XP_008464070.1| (PREDICTED: stress response protein NST1-like [Cucumis melo])

HSP 1 Score: 100.1 bits (248), Expect = 2.6e-18
Identity = 57/113 (50.44%), Postives = 71/113 (62.83%), Query Frame = 1 

Query: 1   KRFETSLNSKFIPRKNGSSSLSPIKRSKPSKRCEASSKEPIPEGFGKKISIKPRTQESSF 60
           K  ETS  SK IP K+ S      K  K SK+ E+SSK+   EG  KKI +KP+TQ SS 
Sbjct: 7   KALETSHTSKLIPEKDASFIQPQAKHLKVSKKPESSSKKSRSEGSRKKILLKPQTQTSSP 66

Query: 61  HSRSIRPNSEKAQRPKRSVTDATLKADEWMKQEESIYHGLSNLEPGMGTMRLD 114
            +  ++P+ E+AQRPK+  TD  L  DE M Q+E+I  GL NLEPGM TM LD
Sbjct: 67  QAHFVKPDLEQAQRPKKDATDFILDIDELMGQKENICKGLPNLEPGMETMWLD 119

The following BLAST results are available for this feature:
BLAST of MELO3C018913 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659072222|ref|XP_008464070.1|2.6e-1850.44PREDICTED: stress response protein NST1-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C018913T1MELO3C018913T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C018913Silver-seed gourdcarmeB0699
MELO3C018913Silver-seed gourdcarmeB0814
MELO3C018913Cucumber (Chinese Long) v3cucmeB085
MELO3C018913Cucumber (Chinese Long) v3cucmeB318
MELO3C018913Watermelon (97103) v2mewmbB493
MELO3C018913Wax gourdmewgoB581
MELO3C018913Cucumber (Gy14) v1cgymeB163
MELO3C018913Cucumber (Gy14) v1cgymeB308
MELO3C018913Cucurbita maxima (Rimu)cmameB246
MELO3C018913Cucurbita maxima (Rimu)cmameB435
MELO3C018913Cucurbita moschata (Rifu)cmomeB234
MELO3C018913Cucurbita moschata (Rifu)cmomeB426
MELO3C018913Wild cucumber (PI 183967)cpimeB081
MELO3C018913Wild cucumber (PI 183967)cpimeB313
MELO3C018913Cucumber (Chinese Long) v2cumeB316
MELO3C018913Watermelon (Charleston Gray)mewcgB487
MELO3C018913Watermelon (97103) v1mewmB515
MELO3C018913Cucurbita pepo (Zucchini)cpemeB541
MELO3C018913Cucurbita pepo (Zucchini)cpemeB590
MELO3C018913Bottle gourd (USVL1VR-Ls)lsimeB448
MELO3C018913Cucumber (Gy14) v2cgybmeB071
MELO3C018913Cucumber (Gy14) v2cgybmeB272