MELO3C018907T2 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C018907T2
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Kanadaptin
Location	chr7 : 12929359 .. 12929847 (-)
Sequence length	357

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAAGAAATTGATGCAATTCGTGCTAAAGACATTTCTCAAGGTGGATTGACACAAGGGCAGCAAACTCAGATCGCTAGGAATGAGCAAAGAATTACTCAGGTGAAAAATTCTACCCCAGAATTAGTATTTCTATTTATTTTGTTACTTTTCTGTTCTAGAATTTCATTACTTCTTTTTCCTTTTTCTCCACATCACTTAAATTATTTCTTCTCCTAAATATAATTTTGGTAGATCATGGAAGAGCTTGAAAATTTGGAAGAGACACTGAATGATAGCATCAGGGAAAGCCTTGGTGCTCGTTCAGGGATCCGATCACGTGGTAAGAAGGGAGGAGGAATGGAAGACGATGAAGAAGTTTTAAGGTATGTTCCAAAAGATAAATGTGGTGCGAGAATGGGGGAGGGGTCTGTTAGGATTCCTTTGTTAAAAGACAATAATAATTCCAACAAAATGATTGATAGAAACAGAGGCAGCACTTTGTGA

mRNA sequence

ATGAAGAAAGAAATTGATGCAATTCGTGCTAAAGACATTTCTCAAGGTGGATTGACACAAGGGCAGCAAACTCAGATCGCTAGGAATGAGCAAAGAATTACTCAGATCATGGAAGAGCTTGAAAATTTGGAAGAGACACTGAATGATAGCATCAGGGAAAGCCTTGGTGCTCGTTCAGGGATCCGATCACGTGGTAAGAAGGGAGGAGGAATGGAAGACGATGAAGAAGTTTTAAGGTATGTTCCAAAAGATAAATGTGGTGCGAGAATGGGGGAGGGGTCTGTTAGGATTCCTTTGTTAAAAGACAATAATAATTCCAACAAAATGATTGATAGAAACAGAGGCAGCACTTTGTGA

Coding sequence (CDS)

ATGAAGAAAGAAATTGATGCAATTCGTGCTAAAGACATTTCTCAAGGTGGATTGACACAAGGGCAGCAAACTCAGATCGCTAGGAATGAGCAAAGAATTACTCAGATCATGGAAGAGCTTGAAAATTTGGAAGAGACACTGAATGATAGCATCAGGGAAAGCCTTGGTGCTCGTTCAGGGATCCGATCACGTGGTAAGAAGGGAGGAGGAATGGAAGACGATGAAGAAGTTTTAAGGTATGTTCCAAAAGATAAATGTGGTGCGAGAATGGGGGAGGGGTCTGTTAGGATTCCTTTGTTAAAAGACAATAATAATTCCAACAAAATGATTGATAGAAACAGAGGCAGCACTTTGTGA

Protein sequence

MKKEIDAIRAKDISQGGLTQGQQTQIARNEQRITQIMEELENLEETLNDSIRESLGARSGIRSRGKKGGGMEDDEEVLRYVPKDKCGARMGEGSVRIPLLKDNNNSNKMIDRNRGSTL*

Homology

[Close]

BLAST of MELO3C018907T2 vs. TrEMBL
Match: A0A061ENF0_THECC (SMAD/FHA domain-containing protein OS=Theobroma cacao GN=TCM_019051 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 4.9e-27
Identity = 65/76 (85.53%), Postives = 71/76 (93.42%), Query Frame = 1


Query: 1   MKKEIDAIRAKDISQGGLTQGQQTQIARNEQRITQIMEELENLEETLNDSIRESLGARSG 60
           MKKEIDAIRAKDI+QGGLTQGQQTQIARNEQRITQIMEELENLEETLN+SIRES+GAR+G
Sbjct: 291 MKKEIDAIRAKDIAQGGLTQGQQTQIARNEQRITQIMEELENLEETLNESIRESIGARAG 350

Query: 61  IRSRGKKGGGMEDDEE 77
             S GK+ GG EDD+E
Sbjct: 351 RISHGKRKGGPEDDDE 366

[Close]

BLAST of MELO3C018907T2 vs. TrEMBL
Match: A0A022RWW3_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a001755mg PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.4e-26
Identity = 64/76 (84.21%), Postives = 71/76 (93.42%), Query Frame = 1


Query: 1   MKKEIDAIRAKDISQGGLTQGQQTQIARNEQRITQIMEELENLEETLNDSIRESLGARSG 60
           MKKEIDAIRAKDI+QGGLTQGQQTQIARNEQRI+QI+EELENLEETLN+SIRESLGAR+G
Sbjct: 321 MKKEIDAIRAKDIAQGGLTQGQQTQIARNEQRISQILEELENLEETLNESIRESLGARTG 380

Query: 61  IRSRGKKGGGMEDDEE 77
             S GKK G MED+E+
Sbjct: 381 KLSHGKKKGSMEDEED 396

[Close]

BLAST of MELO3C018907T2 vs. TrEMBL
Match: A0A068U413_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00039720001 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.9e-26
Identity = 64/76 (84.21%), Postives = 71/76 (93.42%), Query Frame = 1


Query: 1   MKKEIDAIRAKDISQGGLTQGQQTQIARNEQRITQIMEELENLEETLNDSIRESLGARSG 60
           MKKEIDAIRAKDI+QGGLTQGQQTQIARNEQRI+QIMEELENLEETLN+SIRESLGAR+G
Sbjct: 315 MKKEIDAIRAKDIAQGGLTQGQQTQIARNEQRISQIMEELENLEETLNESIRESLGARAG 374

Query: 61  IRSRGKKGGGMEDDEE 77
             +RGK+ G  ED+EE
Sbjct: 375 KTTRGKRQGATEDNEE 390

[Close]

BLAST of MELO3C018907T2 vs. TrEMBL
Match: W9RK47_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_018146 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.2e-26
Identity = 64/78 (82.05%), Postives = 69/78 (88.46%), Query Frame = 1


Query: 1   MKKEIDAIRAKDISQGGLTQGQQTQIARNEQRITQIMEELENLEETLNDSIRESLGARSG 60
           MKKEIDAIR KDISQGGLTQGQQTQIARNEQRI QIMEELENLEETLN+SIRESLGAR+G
Sbjct: 249 MKKEIDAIRTKDISQGGLTQGQQTQIARNEQRIAQIMEELENLEETLNESIRESLGARAG 308

Query: 61  IRSRGKKGGGMEDDEEVL 79
              RG+K G  E+D+E L
Sbjct: 309 TIGRGRKKGAAEEDDEFL 326

[Close]

BLAST of MELO3C018907T2 vs. TrEMBL
Match: A0A067JNE9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25614 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 5.4e-26
Identity = 63/77 (81.82%), Postives = 71/77 (92.21%), Query Frame = 1


Query: 1   MKKEIDAIRAKDISQGGLTQGQQTQIARNEQRITQIMEELENLEETLNDSIRESLGARSG 60
           MKKEIDAIRAKDI+QGGLTQGQQTQIARNEQR+TQI+EELENLEETLN+SIRES+GAR+G
Sbjct: 297 MKKEIDAIRAKDIAQGGLTQGQQTQIARNEQRMTQILEELENLEETLNESIRESIGARAG 356

Query: 61  IRSRGKKGGGMEDDEEV 78
            RS G + G  EDDEE+
Sbjct: 357 RRSGGMRKGTAEDDEEL 373

[Close]

BLAST of MELO3C018907T2 vs. TAIR10
Match: AT5G38840.1 (AT5G38840.1 SMAD/FHA domain-containing protein )

HSP 1 Score: 114.0 bits (284), Expect = 6.3e-26
Identity = 58/78 (74.36%), Postives = 68/78 (87.18%), Query Frame = 1


Query: 1   MKKEIDAIRAKDISQGGLTQGQQTQIARNEQRITQIMEELENLEETLNDSIRESLGARSG 60
           MKKE+ AIRAKDISQGGLTQGQQTQIARNEQR  +++EELENLEETLNDSIRESLGA++G
Sbjct: 294 MKKEVAAIRAKDISQGGLTQGQQTQIARNEQRTAELLEELENLEETLNDSIRESLGAKTG 353

Query: 61  IR-SRGKKGGGMEDDEEV 78
            + + GKK G +ED+E++
Sbjct: 354 RKPTHGKKKGIVEDEEDL 371

[Close]

BLAST of MELO3C018907T2 vs. NCBI nr
Match: gi|449438741|ref|XP_004137146.1| (PREDICTED: kanadaptin [Cucumis sativus])

HSP 1 Score: 152.1 bits (383), Expect = 6.0e-34
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1


Query: 1   MKKEIDAIRAKDISQGGLTQGQQTQIARNEQRITQIMEELENLEETLNDSIRESLGARSG 60
           MKKEIDAIRAKDISQGGLTQGQQTQIARNEQRITQIMEELENLEETLNDSIRESLGARSG
Sbjct: 311 MKKEIDAIRAKDISQGGLTQGQQTQIARNEQRITQIMEELENLEETLNDSIRESLGARSG 370

Query: 61  IRSRGKKGGGMEDDEEVL 79
           IRSRGKKGGGMEDDEEVL
Sbjct: 371 IRSRGKKGGGMEDDEEVL 388

[Close]

BLAST of MELO3C018907T2 vs. NCBI nr
Match: gi|659111073|ref|XP_008455566.1| (PREDICTED: kanadaptin [Cucumis melo])

HSP 1 Score: 152.1 bits (383), Expect = 6.0e-34
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1


Query: 1   MKKEIDAIRAKDISQGGLTQGQQTQIARNEQRITQIMEELENLEETLNDSIRESLGARSG 60
           MKKEIDAIRAKDISQGGLTQGQQTQIARNEQRITQIMEELENLEETLNDSIRESLGARSG
Sbjct: 313 MKKEIDAIRAKDISQGGLTQGQQTQIARNEQRITQIMEELENLEETLNDSIRESLGARSG 372

Query: 61  IRSRGKKGGGMEDDEEVL 79
           IRSRGKKGGGMEDDEEVL
Sbjct: 373 IRSRGKKGGGMEDDEEVL 390

[Close]

BLAST of MELO3C018907T2 vs. NCBI nr
Match: gi|747101837|ref|XP_011099062.1| (PREDICTED: kanadaptin [Sesamum indicum])

HSP 1 Score: 129.4 bits (324), Expect = 4.1e-27
Identity = 65/76 (85.53%), Postives = 72/76 (94.74%), Query Frame = 1


Query: 1   MKKEIDAIRAKDISQGGLTQGQQTQIARNEQRITQIMEELENLEETLNDSIRESLGARSG 60
           MKKEIDAIRAKDI+QGGLTQGQQTQIARNEQRI+QIMEELENLEETLN+SIRES+GAR+G
Sbjct: 306 MKKEIDAIRAKDIAQGGLTQGQQTQIARNEQRISQIMEELENLEETLNESIRESIGARAG 365

Query: 61  IRSRGKKGGGMEDDEE 77
             SRGKK G +ED+EE
Sbjct: 366 KSSRGKKKGNVEDEEE 381

[Close]

BLAST of MELO3C018907T2 vs. NCBI nr
Match: gi|1009127052|ref|XP_015880488.1| (PREDICTED: kanadaptin [Ziziphus jujuba])

HSP 1 Score: 128.6 bits (322), Expect = 7.1e-27
Identity = 67/78 (85.90%), Postives = 70/78 (89.74%), Query Frame = 1


Query: 1   MKKEIDAIRAKDISQGGLTQGQQTQIARNEQRITQIMEELENLEETLNDSIRESLGARSG 60
           MKKEIDAIRAKDISQGGLTQGQQTQIARNEQR+TQIMEELENLEETLN+SIRESLGAR G
Sbjct: 314 MKKEIDAIRAKDISQGGLTQGQQTQIARNEQRMTQIMEELENLEETLNESIRESLGARIG 373

Query: 61  IRSRGKKGGGMEDDEEVL 79
             S GKK G  EDD+E L
Sbjct: 374 KISHGKKKGATEDDDEFL 391

[Close]

BLAST of MELO3C018907T2 vs. NCBI nr
Match: gi|590651557|ref|XP_007032923.1| (SMAD/FHA domain-containing protein [Theobroma cacao])

HSP 1 Score: 128.6 bits (322), Expect = 7.1e-27
Identity = 65/76 (85.53%), Postives = 71/76 (93.42%), Query Frame = 1


Query: 1   MKKEIDAIRAKDISQGGLTQGQQTQIARNEQRITQIMEELENLEETLNDSIRESLGARSG 60
           MKKEIDAIRAKDI+QGGLTQGQQTQIARNEQRITQIMEELENLEETLN+SIRES+GAR+G
Sbjct: 291 MKKEIDAIRAKDIAQGGLTQGQQTQIARNEQRITQIMEELENLEETLNESIRESIGARAG 350

Query: 61  IRSRGKKGGGMEDDEE 77
             S GK+ GG EDD+E
Sbjct: 351 RISHGKRKGGPEDDDE 366

The following BLAST results are available for this feature:

BLAST of MELO3C018907T2 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061ENF0_THECC	4.9e-27	85.53	SMAD/FHA domain-containing protein OS=Theobroma cacao GN=TCM_019051 PE=4 SV=1	[more]
A0A022RWW3_ERYGU	1.4e-26	84.21	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a001755mg PE=4 SV=1	[more]
A0A068U413_COFCA	1.9e-26	84.21	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00039720001 PE=4 SV=1	[more]
W9RK47_9ROSA	3.2e-26	82.05	Uncharacterized protein OS=Morus notabilis GN=L484_018146 PE=4 SV=1	[more]
A0A067JNE9_JATCU	5.4e-26	81.82	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25614 PE=4 SV=1	[more]

BLAST of MELO3C018907T2 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G38840.1	6.3e-26	74.36	SMAD/FHA domain-containing protein	[more]

BLAST of MELO3C018907T2 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449438741\|ref\|XP_004137146.1\|	6.0e-34	100.00	PREDICTED: kanadaptin [Cucumis sativus]	[more]
gi\|659111073\|ref\|XP_008455566.1\|	6.0e-34	100.00	PREDICTED: kanadaptin [Cucumis melo]	[more]
gi\|747101837\|ref\|XP_011099062.1\|	4.1e-27	85.53	PREDICTED: kanadaptin [Sesamum indicum]	[more]
gi\|1009127052\|ref\|XP_015880488.1\|	7.1e-27	85.90	PREDICTED: kanadaptin [Ziziphus jujuba]	[more]
gi\|590651557\|ref\|XP_007032923.1\|	7.1e-27	85.53	SMAD/FHA domain-containing protein [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C018907	MELO3C018907	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C018907T2	MELO3C018907T2-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C018907T2.cds2	MELO3C018907T2.cds2	CDS
MELO3C018907T2.cds1	MELO3C018907T2.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 26..53 scor