MELO3C018907 (gene) Melon (DHL92) v3.5.1

NameMELO3C018907
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionKanadaptin
Locationchr7 : 12925380 .. 12925634 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCTGAAAAATCTTGAAGTCCCACCTGAAACTGAAATTAAAATGAGGACAATCCTGGGTTTCTCCTCTAAAAGAACCATGAAACTCAAGGGAGTAGCGAAGGGTAGGGAGATGTTGATACTCATTGACAGTGGAGCCACCCACAATTTTATTCACCAAGCATTAGTGGAAGAGCTGAAACTGACCATTGAGGAAGGCACGGCTTTTGGAGTAACCATAGGTGATGGGTCAAATAGAAGAGGCAAAGGGTAA

mRNA sequence

ATGGAGCTGAAAAATCTTGAAGTCCCACCTGAAACTGAAATTAAAATGAGGACAATCCTGGGTTTCTCCTCTAAAAGAACCATGAAACTCAAGGGAGTAGCGAAGGGTAGGGAGATGTTGATACTCATTGACAGTGGAGCCACCCACAATTTTATTCACCAAGCATTAGTGGAAGAGCTGAAACTGACCATTGAGGAAGGCACGGCTTTTGGAGTAACCATAGGTGATGGGTCAAATAGAAGAGGCAAAGGGTAA

Coding sequence (CDS)

ATGGAGCTGAAAAATCTTGAAGTCCCACCTGAAACTGAAATTAAAATGAGGACAATCCTGGGTTTCTCCTCTAAAAGAACCATGAAACTCAAGGGAGTAGCGAAGGGTAGGGAGATGTTGATACTCATTGACAGTGGAGCCACCCACAATTTTATTCACCAAGCATTAGTGGAAGAGCTGAAACTGACCATTGAGGAAGGCACGGCTTTTGGAGTAACCATAGGTGATGGGTCAAATAGAAGAGGCAAAGGGTAA

Protein sequence

MELKNLEVPPETEIKMRTILGFSSKRTMKLKGVAKGREMLILIDSGATHNFIHQALVEELKLTIEEGTAFGVTIGDGSNRRGKG*
BLAST of MELO3C018907 vs. TrEMBL
Match: J3SDF5_BETVU (Ty3/gypsy retrotransposon protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.0e-10
Identity = 31/78 (39.74%), Postives = 52/78 (66.67%), Query Frame = 1

Query: 7   EVPPETEIKMRTILGFSSKRTMKLKGVAKGREMLILIDSGATHNFIHQALVEELKLTIEE 66
           E+PPE  + + +++G S+ +TMKL G+    E++++ID GATHNF+    +++L + + E
Sbjct: 464 EIPPE--VSLNSVIGLSNPKTMKLSGLIDNHEVVVMIDPGATHNFLSLKAIDKLGIPVTE 523

Query: 67  GTAFGVTIGDGSNRRGKG 85
              FGV++GDG   RG G
Sbjct: 524 SEEFGVSLGDGQAVRGTG 539

BLAST of MELO3C018907 vs. TrEMBL
Match: F6GVT4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0083g00660 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.9e-10
Identity = 31/79 (39.24%), Postives = 55/79 (69.62%), Query Frame = 1

Query: 6   LEVPPETEIKMRTILGFSSKRTMKLKGVAKGREMLILIDSGATHNFIHQALVEELKLTIE 65
           +E+    E+ + +++G ++  TMK+KG  + +E++IL+DSGATHNF+   LV++L L + 
Sbjct: 29  IELKDVVELSLNSVVGLTTPGTMKIKGTIRSKEVIILVDSGATHNFLSLELVQQLALPLT 88

Query: 66  EGTAFGVTIGDGSNRRGKG 85
             T++GV +G G + +GKG
Sbjct: 89  TITSYGVMMGIGISMKGKG 107

BLAST of MELO3C018907 vs. TrEMBL
Match: A5B2I6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043911 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 5.1e-10
Identity = 31/79 (39.24%), Postives = 54/79 (68.35%), Query Frame = 1

Query: 6    LEVPPETEIKMRTILGFSSKRTMKLKGVAKGREMLILIDSGATHNFIHQALVEELKLTIE 65
            +E+    E+ + +++G ++  TMK+KG    +E++IL+DSGATHNF+   LV++L L + 
Sbjct: 1037 IELKDAVELSLNSVVGLTTPGTMKIKGTIGSKEVIILVDSGATHNFLSLELVQQLTLPLT 1096

Query: 66   EGTAFGVTIGDGSNRRGKG 85
              T++GV +G G + +GKG
Sbjct: 1097 TTTSYGVMMGTGISVKGKG 1115

BLAST of MELO3C018907 vs. TrEMBL
Match: A0A0L9V4Z2_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g083500 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 5.1e-10
Identity = 33/64 (51.56%), Postives = 48/64 (75.00%), Query Frame = 1

Query: 21  GFSSKRTMKLKGVAKGREMLILIDSGATHNFIHQALVEELKLTIEEGTAFGVTIGDGSNR 80
           G +S +TMKLKG  +GRE+L+LID+GA+HNFI Q LVEE+ +T+ E   + V++GDG  +
Sbjct: 383 GLTSPKTMKLKGRIEGREVLVLIDNGASHNFIRQELVEEMGMTVVETPPYRVSLGDGYQK 442

Query: 81  RGKG 85
           +  G
Sbjct: 443 KTGG 446

BLAST of MELO3C018907 vs. TrEMBL
Match: A0A0D3BSK9_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 6.7e-10
Identity = 33/78 (42.31%), Postives = 50/78 (64.10%), Query Frame = 1

Query: 7   EVPPETEIKMRTILGFSSKRTMKLKGVAKGREMLILIDSGATHNFIHQALVEELKLTIEE 66
           E+    E+ + +++G S+  T+KL+G   G E+++LIDSGATHNFI ++LV  L LT   
Sbjct: 518 EITEVAELSVNSVVGLSAPHTIKLRGTINGEEVVVLIDSGATHNFISESLVRRLGLTRGT 577

Query: 67  GTAFGVTIGDGSNRRGKG 85
              +GV +G G   +GKG
Sbjct: 578 SRGYGVMVGGGMIVQGKG 595

BLAST of MELO3C018907 vs. NCBI nr
Match: gi|659115482|ref|XP_008457581.1| (PREDICTED: uncharacterized protein LOC103497247 [Cucumis melo])

HSP 1 Score: 110.2 bits (274), Expect = 1.9e-21
Identity = 53/84 (63.10%), Postives = 67/84 (79.76%), Query Frame = 1

Query: 1   MELKNLEVPPETEIKMRTILGFSSKRTMKLKGVAKGREMLILIDSGATHNFIHQALVEEL 60
           +E + LEV  +TEI +RTILGF+SK TMKL+G  KGR+++ILIDSGATHNFIHQ +V+EL
Sbjct: 217 VEFETLEVKRKTEISLRTILGFTSKGTMKLRGTIKGRKVIILIDSGATHNFIHQGIVQEL 276

Query: 61  KLTIEEGTAFGVTIGDGSNRRGKG 85
            L++   T FGVTIGDG+   GKG
Sbjct: 277 ALSLHGKTKFGVTIGDGTTLEGKG 300

BLAST of MELO3C018907 vs. NCBI nr
Match: gi|778697580|ref|XP_011654353.1| (PREDICTED: uncharacterized protein LOC105435354 [Cucumis sativus])

HSP 1 Score: 98.6 bits (244), Expect = 5.6e-18
Identity = 48/84 (57.14%), Postives = 63/84 (75.00%), Query Frame = 1

Query: 1   MELKNLEVPPETEIKMRTILGFSSKRTMKLKGVAKGREMLILIDSGATHNFIHQALVEEL 60
           +EL  L +   TEI+++ I G +SK TMK+KG  KG+E+LILIDSGATHNFIH  +VEE+
Sbjct: 359 LELNQLTLEEGTEIELKAIHGLTSKGTMKIKGEIKGKEVLILIDSGATHNFIHNKIVEEV 418

Query: 61  KLTIEEGTAFGVTIGDGSNRRGKG 85
            L +E  T FGVTIGDG+  +G+G
Sbjct: 419 GLELENHTPFGVTIGDGTRCQGRG 442

BLAST of MELO3C018907 vs. NCBI nr
Match: gi|659109624|ref|XP_008454797.1| (PREDICTED: uncharacterized protein LOC103495115 [Cucumis melo])

HSP 1 Score: 98.2 bits (243), Expect = 7.3e-18
Identity = 47/84 (55.95%), Postives = 66/84 (78.57%), Query Frame = 1

Query: 1   MELKNLEVPPETEIKMRTILGFSSKRTMKLKGVAKGREMLILIDSGATHNFIHQALVEEL 60
           +ELKNLE+   TEI+++T+ G +SK TMKLKG    +++++LIDS AT+NFIHQ+L EEL
Sbjct: 133 VELKNLEITEGTEIELKTMTGLTSKGTMKLKGWVGDKKIVVLIDSEATYNFIHQSLAEEL 192

Query: 61  KLTIEEGTAFGVTIGDGSNRRGKG 85
           K+ +E+ T F VTIGDG+  +GKG
Sbjct: 193 KMRLEQDTHFRVTIGDGTRCKGKG 216

BLAST of MELO3C018907 vs. NCBI nr
Match: gi|778726094|ref|XP_011659055.1| (PREDICTED: uncharacterized protein LOC105436127 [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 1.2e-17
Identity = 46/84 (54.76%), Postives = 63/84 (75.00%), Query Frame = 1

Query: 1   MELKNLEVPPETEIKMRTILGFSSKRTMKLKGVAKGREMLILIDSGATHNFIHQALVEEL 60
           +ELK +++    E+++RTI   SSK TMKL G+ KG+ + +LIDSGATHNFIHQ L EE 
Sbjct: 94  VELKKMDLIEGEEVELRTITSLSSKGTMKLMGMVKGKAVTVLIDSGATHNFIHQTLAEER 153

Query: 61  KLTIEEGTAFGVTIGDGSNRRGKG 85
            + I+E T+FGVTIG+G+  +GKG
Sbjct: 154 HILIDEDTSFGVTIGNGTKCKGKG 177

BLAST of MELO3C018907 vs. NCBI nr
Match: gi|659077522|ref|XP_008439250.1| (PREDICTED: uncharacterized protein LOC103484090 [Cucumis melo])

HSP 1 Score: 96.3 bits (238), Expect = 2.8e-17
Identity = 47/84 (55.95%), Postives = 65/84 (77.38%), Query Frame = 1

Query: 1   MELKNLEVPPETEIKMRTILGFSSKRTMKLKGVAKGREMLILIDSGATHNFIHQALVEEL 60
           +ELK LE+  +  I+++T+  FSSK TMKLKG  + +E++ILIDSGATHNFIHQ+L  +L
Sbjct: 133 VELKTLELTEDIAIELKTMTRFSSKGTMKLKGWIRQKEIVILIDSGATHNFIHQSLAVDL 192

Query: 61  KLTIEEGTAFGVTIGDGSNRRGKG 85
           KL +E+ T FG TIG+G+  +GKG
Sbjct: 193 KLGLEQHTQFGYTIGNGTRCKGKG 216

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
J3SDF5_BETVU3.0e-1039.74Ty3/gypsy retrotransposon protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1[more]
F6GVT4_VITVI3.9e-1039.24Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0083g00660 PE=4 SV=... [more]
A5B2I6_VITVI5.1e-1039.24Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043911 PE=4 SV=1[more]
A0A0L9V4Z2_PHAAN5.1e-1051.56Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g083500 PE=4 SV=1[more]
A0A0D3BSK9_BRAOL6.7e-1042.31Uncharacterized protein OS=Brassica oleracea var. oleracea PE=3 SV=1[more]
Match NameE-valueIdentityDescription
gi|659115482|ref|XP_008457581.1|1.9e-2163.10PREDICTED: uncharacterized protein LOC103497247 [Cucumis melo][more]
gi|778697580|ref|XP_011654353.1|5.6e-1857.14PREDICTED: uncharacterized protein LOC105435354 [Cucumis sativus][more]
gi|659109624|ref|XP_008454797.1|7.3e-1855.95PREDICTED: uncharacterized protein LOC103495115 [Cucumis melo][more]
gi|778726094|ref|XP_011659055.1|1.2e-1754.76PREDICTED: uncharacterized protein LOC105436127 [Cucumis sativus][more]
gi|659077522|ref|XP_008439250.1|2.8e-1755.95PREDICTED: uncharacterized protein LOC103484090 [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C018907T1MELO3C018907T1mRNA
MELO3C018907T2MELO3C018907T2mRNA


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 26..53
scor

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None