MELO3C018770T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C018770T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Wound-responsive family protein
Location	chr1 : 2700971 .. 2701639 (-)
Sequence length	669

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AACCAACAAAAATTCAAATCCAAGAAGCAAAATATTGAGAAATTTTTATAGTGAAAAAAAAAAAGGAAAATGAGTTCGTCAACAAGAGCTTTGGTTGTAGCAGCCACCGTGGGCGTCGTGGAAGCACTGAAGGATCAAGGAATATGCCGGTGGAATCATCTGTTAAGATCGGCGCACCACTACGCTAGAAACCATGTCCGGTCTATTTCTCAGGCTAAGAAGCTTTCCTCCGCCGTGCCTTCCGCCAACCGCTTCCAACAGTCGGAGGAATCTCTGAGGACGGTCATGTATCTTAGTTGTTGGGGTCCTAATAACTGAGCGCAACTCAACAAACCGTCCATAGATTACTCTCCGGTTTTGACCGGCGCTGGTCAGTTTTCGGATCGTGATCGTAATCAATTGTAGACGGTTGGGCCGCCTGTTTTCATTTTTTATTTTGGAAGGATTGTAAAAGCAATTCACTTAATTATTTAATACAATTGAAACAAAGAGAGCTTCTTCAGCACTTTAATTTCCGTTGCACGTTAATTATTTTCTTTATTAACTGGGATCAATTTTCATTCTAATTAATTAAACTCTATATCCACCTCTATCTATTGTAAAAGAAAACATGAACATAGATATTGTAAACTCCTAATTTTATCAAATTATACTCTAAATTTGTTGTTG

mRNA sequence

AACCAACAAAAATTCAAATCCAAGAAGCAAAATATTGAGAAATTTTTATAGTGAAAAAAAAAAAGGAAAATGAGTTCGTCAACAAGAGCTTTGGTTGTAGCAGCCACCGTGGGCGTCGTGGAAGCACTGAAGGATCAAGGAATATGCCGGTGGAATCATCTGTTAAGATCGGCGCACCACTACGCTAGAAACCATGTCCGGTCTATTTCTCAGGCTAAGAAGCTTTCCTCCGCCGTGCCTTCCGCCAACCGCTTCCAACAGTCGGAGGAATCTCTGAGGACGGTCATGTATCTTAGTTGTTGGGGTCCTAATAACTGAGCGCAACTCAACAAACCGTCCATAGATTACTCTCCGGTTTTGACCGGCGCTGGTCAGTTTTCGGATCGTGATCGTAATCAATTGTAGACGGTTGGGCCGCCTGTTTTCATTTTTTATTTTGGAAGGATTGTAAAAGCAATTCACTTAATTATTTAATACAATTGAAACAAAGAGAGCTTCTTCAGCACTTTAATTTCCGTTGCACGTTAATTATTTTCTTTATTAACTGGGATCAATTTTCATTCTAATTAATTAAACTCTATATCCACCTCTATCTATTGTAAAAGAAAACATGAACATAGATATTGTAAACTCCTAATTTTATCAAATTATACTCTAAATTTGTTGTTG

Coding sequence (CDS)

ATGAGTTCGTCAACAAGAGCTTTGGTTGTAGCAGCCACCGTGGGCGTCGTGGAAGCACTGAAGGATCAAGGAATATGCCGGTGGAATCATCTGTTAAGATCGGCGCACCACTACGCTAGAAACCATGTCCGGTCTATTTCTCAGGCTAAGAAGCTTTCCTCCGCCGTGCCTTCCGCCAACCGCTTCCAACAGTCGGAGGAATCTCTGAGGACGGTCATGTATCTTAGTTGTTGGGGTCCTAATAACTGA

Protein sequence

MSSSTRALVVAATVGVVEALKDQGICRWNHLLRSAHHYARNHVRSISQAKKLSSAVPSANRFQQSEESLRTVMYLSCWGPNN*

Homology

[Close]

BLAST of MELO3C018770T1 vs. TrEMBL
Match: A0A0A0K6Y8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G046640 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 8.7e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1


Query: 1  MSSSTRALVVAATVGVVEALKDQGICRWNHLLRSAHHYARNHVRSISQAKKLSSAVPSAN 60
          MSSSTRALVVAATVGVVEALKDQGICRWNHLLRSAHHYARNHVRSISQAKKLSSAVPSAN
Sbjct: 1  MSSSTRALVVAATVGVVEALKDQGICRWNHLLRSAHHYARNHVRSISQAKKLSSAVPSAN 60

Query: 61 RFQQSEESLRTVMYLSCWGPNN 83
          RFQQSEESLRTVMYLSCWGPNN
Sbjct: 61 RFQQSEESLRTVMYLSCWGPNN 82

[Close]

BLAST of MELO3C018770T1 vs. TrEMBL
Match: A0A0A0K5N2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G046650 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 7.6e-35
Identity = 75/82 (91.46%), Postives = 77/82 (93.90%), Query Frame = 1


Query: 1  MSSSTRALVVAATVGVVEALKDQGICRWNHLLRSAHHYARNHVRSISQAKKLSSAVPSAN 60
          MSSSTRAL VAATVGVVEALKDQGICRWNH+LRSAHHYARNHV S+SQAKK SSAV SAN
Sbjct: 1  MSSSTRALFVAATVGVVEALKDQGICRWNHILRSAHHYARNHVGSLSQAKKFSSAVSSAN 60

Query: 61 RFQQSEESLRTVMYLSCWGPNN 83
          R QQSEESLRTVMYLSCWGPNN
Sbjct: 61 RLQQSEESLRTVMYLSCWGPNN 82

[Close]

BLAST of MELO3C018770T1 vs. TrEMBL
Match: A0A0A0K3P5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G046670 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.9e-25
Identity = 62/85 (72.94%), Postives = 69/85 (81.18%), Query Frame = 1


Query: 1  MSSSTRALVVAATVGVVEALKDQGICRWNHLLRSAHHYARNHVRSISQAKKLSS---AVP 60
          MS   +  VVAA+VGVVEALKDQGICRWNH +RS   YA+NHVRSISQAKKLSS   A  
Sbjct: 1  MSCCRKGWVVAASVGVVEALKDQGICRWNHTIRSLQQYAKNHVRSISQAKKLSSPSAAAV 60

Query: 61 SANRFQQSEESLRTVMYLSCWGPNN 83
          S +++ QSEESLRTVMYLSCWGPNN
Sbjct: 61 SDHKWNQSEESLRTVMYLSCWGPNN 85

[Close]

BLAST of MELO3C018770T1 vs. TrEMBL
Match: I3SKC5_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 4.6e-24
Identity = 59/92 (64.13%), Postives = 72/92 (78.26%), Query Frame = 1


Query: 1  MSSSTRALVVAATVGVVEALKDQGICRWNHLLRSAHHYARNHVRSISQAKKLSSAVPSA- 60
          MSS++RA  VAA+VGVVEALKDQG+CRWN ++RSA H+ +NHVRS+SQAKKLSS+  S+ 
Sbjct: 2  MSSASRAWTVAASVGVVEALKDQGLCRWNSVIRSAQHHVKNHVRSLSQAKKLSSSSSSSA 61

Query: 61 ---------NRFQQSEESLRTVMYLSCWGPNN 83
                      ++SEESLRTVMYLSCWGPNN
Sbjct: 62 MVSNRSLKEEEAKKSEESLRTVMYLSCWGPNN 93

[Close]

BLAST of MELO3C018770T1 vs. TrEMBL
Match: A0A0D2PKH2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G206000 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.3e-23
Identity = 58/86 (67.44%), Postives = 70/86 (81.40%), Query Frame = 1


Query: 1  MSSSTRALVVAATVGVVEALKDQGICRWNHLLRSAHHYARNHVRSISQAKKLSSAVPSA- 60
          MSS++RA VVAA++G VEALKDQGICRWN+ +RS   +A+NHVRS SQAK LSS   +A 
Sbjct: 1  MSSTSRAWVVAASIGAVEALKDQGICRWNYTVRSVVQHAKNHVRSASQAKNLSSQSSAAI 60

Query: 61 ----NRFQQSEESLRTVMYLSCWGPN 82
              N+++QSEESLRTVMYLSCWGPN
Sbjct: 61 SKGLNKYKQSEESLRTVMYLSCWGPN 86

[Close]

BLAST of MELO3C018770T1 vs. TAIR10
Match: AT4G10265.1 (AT4G10265.1 Wound-responsive family protein)

HSP 1 Score: 109.4 bits (272), Expect = 1.1e-24
Identity = 52/83 (62.65%), Postives = 70/83 (84.34%), Query Frame = 1


Query: 1  MSSSTRALVVAATVGVVEALKDQ-GICRWNHLLRSAHHYARNHVRSISQAKKL-SSAVPS 60
          MSS+++  +VAA++G VEALKDQ G+CRWN+++RSA+ Y RN++RS+SQAKKL SS++  
Sbjct: 1  MSSASKTWMVAASIGAVEALKDQLGVCRWNYVIRSANQYLRNNLRSVSQAKKLSSSSIDY 60

Query: 61 ANRFQQSEESLRTVMYLSCWGPN 82
           N+ +Q+EESLRTVMYLSCWGP+
Sbjct: 61 TNKTKQAEESLRTVMYLSCWGPS 83

[Close]

BLAST of MELO3C018770T1 vs. TAIR10
Match: AT4G10270.1 (AT4G10270.1 Wound-responsive family protein)

HSP 1 Score: 100.1 bits (248), Expect = 6.6e-22
Identity = 50/90 (55.56%), Postives = 66/90 (73.33%), Query Frame = 1


Query: 1  MSSSTRALVVAATVGVVEALKDQ-GICRWNHLLRSAHHYARNHVRSISQAKKLSSAVPSA 60
          MSS+++A  VA ++G VEALKDQ G+CRWN++LRS + + RN+VRS+SQ K+ SS+  SA
Sbjct: 1  MSSTSKAWTVAVSIGAVEALKDQLGLCRWNYILRSVNQHLRNNVRSVSQGKRFSSSSVSA 60

Query: 61 --------NRFQQSEESLRTVMYLSCWGPN 82
                   + +++EESLRTVMYLSCWGPN
Sbjct: 61 AVTSSGESEKAKKAEESLRTVMYLSCWGPN 90

[Close]

BLAST of MELO3C018770T1 vs. TAIR10
Match: AT4G33560.1 (AT4G33560.1 Wound-responsive family protein)

HSP 1 Score: 49.7 bits (117), Expect = 1.0e-06
Identity = 29/80 (36.25%), Postives = 38/80 (47.50%), Query Frame = 1


Query: 10 VAATVGVVEALKDQGICRWNHLLRSAHHYARNHVRSISQAKKLSSAVPSANRFQ------ 69
          VA  +  VE LKDQG+ RWN+L R  H  A   VR+I+   + S    S++         
Sbjct: 11 VATAIAAVEVLKDQGVARWNYLFRLLHKEAMARVRTITVPSRPSPPTSSSSATSIRSKPL 70

Query: 70 ---QSEESLRTVMYLSCWGP 81
               E S    M LSC+GP
Sbjct: 71 STTPFETSFEKAMGLSCFGP 90

[Close]

BLAST of MELO3C018770T1 vs. NCBI nr
Match: gi|449438060|ref|XP_004136808.1| (PREDICTED: uncharacterized protein LOC101223015 [Cucumis sativus])

HSP 1 Score: 167.2 bits (422), Expect = 1.2e-38
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1


Query: 1  MSSSTRALVVAATVGVVEALKDQGICRWNHLLRSAHHYARNHVRSISQAKKLSSAVPSAN 60
          MSSSTRALVVAATVGVVEALKDQGICRWNHLLRSAHHYARNHVRSISQAKKLSSAVPSAN
Sbjct: 1  MSSSTRALVVAATVGVVEALKDQGICRWNHLLRSAHHYARNHVRSISQAKKLSSAVPSAN 60

Query: 61 RFQQSEESLRTVMYLSCWGPNN 83
          RFQQSEESLRTVMYLSCWGPNN
Sbjct: 61 RFQQSEESLRTVMYLSCWGPNN 82

[Close]

BLAST of MELO3C018770T1 vs. NCBI nr
Match: gi|659110685|ref|XP_008455358.1| (PREDICTED: uncharacterized protein LOC103495544 [Cucumis melo])

HSP 1 Score: 156.4 bits (394), Expect = 2.2e-35
Identity = 76/82 (92.68%), Postives = 78/82 (95.12%), Query Frame = 1


Query: 1  MSSSTRALVVAATVGVVEALKDQGICRWNHLLRSAHHYARNHVRSISQAKKLSSAVPSAN 60
          MSSSTRAL+VAATVGVVEALKDQGICRWNH+LRSAHHYARNHV SISQAKK SSAV SAN
Sbjct: 1  MSSSTRALIVAATVGVVEALKDQGICRWNHILRSAHHYARNHVGSISQAKKFSSAVSSAN 60

Query: 61 RFQQSEESLRTVMYLSCWGPNN 83
          R QQSEESLRTVMYLSCWGPNN
Sbjct: 61 RLQQSEESLRTVMYLSCWGPNN 82

[Close]

BLAST of MELO3C018770T1 vs. NCBI nr
Match: gi|449438058|ref|XP_004136807.1| (PREDICTED: uncharacterized protein LOC101222779 [Cucumis sativus])

HSP 1 Score: 154.1 bits (388), Expect = 1.1e-34
Identity = 75/82 (91.46%), Postives = 77/82 (93.90%), Query Frame = 1


Query: 1  MSSSTRALVVAATVGVVEALKDQGICRWNHLLRSAHHYARNHVRSISQAKKLSSAVPSAN 60
          MSSSTRAL VAATVGVVEALKDQGICRWNH+LRSAHHYARNHV S+SQAKK SSAV SAN
Sbjct: 1  MSSSTRALFVAATVGVVEALKDQGICRWNHILRSAHHYARNHVGSLSQAKKFSSAVSSAN 60

Query: 61 RFQQSEESLRTVMYLSCWGPNN 83
          R QQSEESLRTVMYLSCWGPNN
Sbjct: 61 RLQQSEESLRTVMYLSCWGPNN 82

[Close]

BLAST of MELO3C018770T1 vs. NCBI nr
Match: gi|659110681|ref|XP_008455355.1| (PREDICTED: uncharacterized protein LOC103495542 [Cucumis melo])

HSP 1 Score: 126.3 bits (316), Expect = 2.4e-26
Identity = 64/85 (75.29%), Postives = 71/85 (83.53%), Query Frame = 1


Query: 1  MSSSTRALVVAATVGVVEALKDQGICRWNHLLRSAHHYARNHVRSISQAKKLSS---AVP 60
          MS S +  VVAA+VGVVEALKDQGICRWNH +RS   YA+NHVRSISQAKKLSS   A  
Sbjct: 1  MSCSRKGWVVAASVGVVEALKDQGICRWNHTIRSLQQYAKNHVRSISQAKKLSSPSAATV 60

Query: 61 SANRFQQSEESLRTVMYLSCWGPNN 83
          S +R++QSEESLRTVMYLSCWGPNN
Sbjct: 61 SDHRWKQSEESLRTVMYLSCWGPNN 85

[Close]

BLAST of MELO3C018770T1 vs. NCBI nr
Match: gi|449438062|ref|XP_004136809.1| (PREDICTED: uncharacterized protein LOC101202743 [Cucumis sativus])

HSP 1 Score: 122.9 bits (307), Expect = 2.7e-25
Identity = 62/85 (72.94%), Postives = 69/85 (81.18%), Query Frame = 1


Query: 1  MSSSTRALVVAATVGVVEALKDQGICRWNHLLRSAHHYARNHVRSISQAKKLSS---AVP 60
          MS   +  VVAA+VGVVEALKDQGICRWNH +RS   YA+NHVRSISQAKKLSS   A  
Sbjct: 1  MSCCRKGWVVAASVGVVEALKDQGICRWNHTIRSLQQYAKNHVRSISQAKKLSSPSAAAV 60

Query: 61 SANRFQQSEESLRTVMYLSCWGPNN 83
          S +++ QSEESLRTVMYLSCWGPNN
Sbjct: 61 SDHKWNQSEESLRTVMYLSCWGPNN 85

The following BLAST results are available for this feature:

BLAST of MELO3C018770T1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6Y8_CUCSA	8.7e-39	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G046640 PE=4 SV=1	[more]
A0A0A0K5N2_CUCSA	7.6e-35	91.46	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G046650 PE=4 SV=1	[more]
A0A0A0K3P5_CUCSA	1.9e-25	72.94	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G046670 PE=4 SV=1	[more]
I3SKC5_LOTJA	4.6e-24	64.13	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
A0A0D2PKH2_GOSRA	1.3e-23	67.44	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G206000 PE=4 SV=1	[more]

BLAST of MELO3C018770T1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G10265.1	1.1e-24	62.65	Wound-responsive family protein	[more]
AT4G10270.1	6.6e-22	55.56	Wound-responsive family protein	[more]
AT4G33560.1	1.0e-06	36.25	Wound-responsive family protein	[more]

BLAST of MELO3C018770T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449438060\|ref\|XP_004136808.1\|	1.2e-38	100.00	PREDICTED: uncharacterized protein LOC101223015 [Cucumis sativus]	[more]
gi\|659110685\|ref\|XP_008455358.1\|	2.2e-35	92.68	PREDICTED: uncharacterized protein LOC103495544 [Cucumis melo]	[more]
gi\|449438058\|ref\|XP_004136807.1\|	1.1e-34	91.46	PREDICTED: uncharacterized protein LOC101222779 [Cucumis sativus]	[more]
gi\|659110681\|ref\|XP_008455355.1\|	2.4e-26	75.29	PREDICTED: uncharacterized protein LOC103495542 [Cucumis melo]	[more]
gi\|449438062\|ref\|XP_004136809.1\|	2.7e-25	72.94	PREDICTED: uncharacterized protein LOC101202743 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR022251	DUF3774_wound-induced

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C018770	MELO3C018770	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C018770T1	MELO3C018770T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C018770T1.cds1	MELO3C018770T1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022251	Protein of unknown function wound-induced	PFAM	PF12609	DUF3774	coord: 10..80 score: 9.4
None	No IPR available	PANTHER	PTHR33090	FAMILY NOT NAMED	coord: 1..81 score: 3.8