MELO3C018543T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C018543T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein
Location	chr1 : 1008030 .. 1008206 (-)
Sequence length	177

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACTCGTCACCGCTCTCTCCACCCTTTGCATCGTTGCACTAACCCTAACCCCAATCGTCGTTGCTCAAAACAGCCCTCAAGACTTCGTCGATGCACACAATGCAGTGCGAGCCAAGGTTGGGGCTGAACCCCTATTTTGGGACGAAGAACTTGAAGCTTACGCTATAAATTAA

mRNA sequence

ATGGCACTCGTCACCGCTCTCTCCACCCTTTGCATCGTTGCACTAACCCTAACCCCAATCGTCGTTGCTCAAAACAGCCCTCAAGACTTCGTCGATGCACACAATGCAGTGCGAGCCAAGGTTGGGGCTGAACCCCTATTTTGGGACGAAGAACTTGAAGCTTACGCTATAAATTAA

Coding sequence (CDS)

ATGGCACTCGTCACCGCTCTCTCCACCCTTTGCATCGTTGCACTAACCCTAACCCCAATCGTCGTTGCTCAAAACAGCCCTCAAGACTTCGTCGATGCACACAATGCAGTGCGAGCCAAGGTTGGGGCTGAACCCCTATTTTGGGACGAAGAACTTGAAGCTTACGCTATAAATTAA

Protein sequence

MALVTALSTLCIVALTLTPIVVAQNSPQDFVDAHNAVRAKVGAEPLFWDEELEAYAIN*

Homology

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BLAST of MELO3C018543T1 vs. Swiss-Prot
Match: PR1_SAMNI (Pathogenesis-related protein PR-1 type OS=Sambucus nigra PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 4.3e-09
Identity = 26/51 (50.98%), Postives = 35/51 (68.63%), Query Frame = 1


Query: 6  ALSTLCIVALTLTPIVVAQNSPQDFVDAHNAVRAKVGAEPLFWDEELEAYA 57
          +++ +C+VAL +    VAQNSPQD+VDAHNA R+ V   P+ WDE + A+A
Sbjct: 11 SVALVCVVALVMVQYSVAQNSPQDYVDAHNAARSAVNVGPVTWDESVAAFA 61

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BLAST of MELO3C018543T1 vs. Swiss-Prot
Match: PR1C_TOBAC (Pathogenesis-related protein 1C OS=Nicotiana tabacum PE=2 SV=3)

HSP 1 Score: 55.5 bits (132), Expect = 2.4e-07
Identity = 27/61 (44.26%), Postives = 38/61 (62.30%), Query Frame = 1


Query: 3  LVTALSTLCIVALTLTPIVV-----AQNSPQDFVDAHNAVRAKVGAEPLFWDEELEAYAI 59
          L + +S+  +V+  L  +++     AQNS QD++DAHN  RA VG EPL WD+++ AYA 
Sbjct: 5  LFSQMSSFFLVSTLLLFLIISHSCHAQNSQQDYLDAHNTARADVGVEPLTWDDQVAAYAQ 64

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BLAST of MELO3C018543T1 vs. Swiss-Prot
Match: PR1A_TOBAC (Pathogenesis-related protein 1A OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.1e-07
Identity = 28/61 (45.90%), Postives = 37/61 (60.66%), Query Frame = 1


Query: 3  LVTALSTLCIVALTLTPIVV-----AQNSPQDFVDAHNAVRAKVGAEPLFWDEELEAYAI 59
          L + L +  +V+  L  +V+     AQNS QD++DAHN  RA VG EPL WD+++ AYA 
Sbjct: 5  LFSQLPSFLLVSTLLLFLVISHSCRAQNSQQDYLDAHNTARADVGVEPLTWDDQVAAYAQ 64

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BLAST of MELO3C018543T1 vs. Swiss-Prot
Match: PR1B_TOBAC (Pathogenesis-related protein 1B OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 3.4e-06
Identity = 23/36 (63.89%), Postives = 24/36 (66.67%), Query Frame = 1


Query: 23 AQNSPQDFVDAHNAVRAKVGAEPLFWDEELEAYAIN 59
          AQNS QD++DAHN  RA VG EPL WD  + AYA N
Sbjct: 30 AQNSQQDYLDAHNTARADVGVEPLTWDNGVAAYAQN 65

[Close]

BLAST of MELO3C018543T1 vs. Swiss-Prot
Match: PRB1_TOBAC (Basic form of pathogenesis-related protein 1 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 5.8e-06
Identity = 25/58 (43.10%), Postives = 30/58 (51.72%), Query Frame = 1


Query: 1  MALVTALSTLCIVALTLTPIVVAQNSPQDFVDAHNAVRAKVGAEPLFWDEELEAYAIN 59
          M  +T +    I    L     AQNSPQD+++ HNA R +VG  P+ WD  L AYA N
Sbjct: 1  MGFLTTIVACFITFAILIHSSKAQNSPQDYLNPHNAARRQVGVGPMTWDNRLAAYAQN 58

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BLAST of MELO3C018543T1 vs. TrEMBL
Match: A0A0A0K4C6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070250 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.2e-12
Identity = 37/59 (62.71%), Postives = 49/59 (83.05%), Query Frame = 1


Query: 1  MALVTALSTLCIVALTLT-PIVVAQNSPQDFVDAHNAVRAKVGAEPLFWDEELEAYAIN 59
          MAL    S++C++ LTLT P++VA N+PQ++VDAHNAVRA+VGA+P+FWDEEL  YA N
Sbjct: 4  MALSNFPSSICLIMLTLTIPMIVAHNTPQNYVDAHNAVRAEVGADPVFWDEELAKYAQN 62

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BLAST of MELO3C018543T1 vs. TrEMBL
Match: A0A0A0K2V2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070240 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.9e-08
Identity = 31/41 (75.61%), Postives = 34/41 (82.93%), Query Frame = 1


Query: 1  MALVTALSTLCIVALTLTPIVVAQNSPQDFVDAHNAVRAKV 42
          MAL T LS LCIVAL LTPIV+AQNSPQDF DAHNA+  K+
Sbjct: 4  MALATTLSALCIVALALTPIVIAQNSPQDFFDAHNALTLKI 44

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BLAST of MELO3C018543T1 vs. TrEMBL
Match: I1KL97_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_07G186300 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.6e-07
Identity = 28/47 (59.57%), Postives = 37/47 (78.72%), Query Frame = 1


Query: 10 LCIVALTLTPIVVAQNSPQDFVDAHNAVRAKVGAEPLFWDEELEAYA 57
          L IV +++  I +AQNSP+DF+DAHNA RA+VG EPL WD+ + AYA
Sbjct: 10 LTIVIISMCSISLAQNSPKDFLDAHNAARAEVGVEPLAWDDTVAAYA 56

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BLAST of MELO3C018543T1 vs. TrEMBL
Match: M0S7L3_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.1e-07
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 1


Query: 6  ALSTLCIVALTLTPIVVAQNSPQDFVDAHNAVRAKVGAEPLFWDEELEAYAIN 59
          A + +C +AL +    +AQNSPQDFVDAHN+ RA VG  P+ WD+ + AYA N
Sbjct: 7  ASALVCAMALAMACTTLAQNSPQDFVDAHNSARAAVGVGPVSWDDNVAAYAQN 59

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BLAST of MELO3C018543T1 vs. TrEMBL
Match: M0S7L2_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.1e-07
Identity = 27/53 (50.94%), Postives = 38/53 (71.70%), Query Frame = 1


Query: 6  ALSTLCIVALTLTPIVVAQNSPQDFVDAHNAVRAKVGAEPLFWDEELEAYAIN 59
          A + +C++AL +    +AQNSP+DFVDAHN  RA VG  P+ WD+++ AYA N
Sbjct: 7  ASALVCVMALAMAYTTLAQNSPRDFVDAHNTARAAVGVGPVSWDDKVTAYAEN 59

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BLAST of MELO3C018543T1 vs. TAIR10
Match: AT2G14580.1 (AT2G14580.1 basic pathogenesis-related protein 1)

HSP 1 Score: 50.4 bits (119), Expect = 4.3e-07
Identity = 26/59 (44.07%), Postives = 35/59 (59.32%), Query Frame = 1


Query: 4  VTALSTLCIVALTLTPIVV----AQNSPQDFVDAHNAVRAKVGAEPLFWDEELEAYAIN 59
          VT+ S + I+   L   +V    AQ+S QD+V+AHN  R+++G  P+ WDE L AYA N
Sbjct: 3  VTSYSRILIILAALVGALVVPLKAQDSQQDYVNAHNQARSQIGVGPMQWDEGLAAYARN 61

[Close]

BLAST of MELO3C018543T1 vs. TAIR10
Match: AT4G33720.1 (AT4G33720.1 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein)

HSP 1 Score: 50.1 bits (118), Expect = 5.6e-07
Identity = 24/44 (54.55%), Postives = 28/44 (63.64%), Query Frame = 1


Query: 15 LTLTPIVVAQNSPQDFVDAHNAVRAKVGAEPLFWDEELEAYAIN 59
          L L   + AQ+SPQDF+  HN  RA+VG  PL WDE++ AYA N
Sbjct: 18 LVLIVHLKAQDSPQDFLAVHNRARAEVGVGPLRWDEKVAAYARN 61

[Close]

BLAST of MELO3C018543T1 vs. TAIR10
Match: AT1G50060.1 (AT1G50060.1 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein)

HSP 1 Score: 50.1 bits (118), Expect = 5.6e-07
Identity = 23/50 (46.00%), Postives = 32/50 (64.00%), Query Frame = 1


Query: 10 LCIVALTLTPIVV-AQNSPQDFVDAHNAVRAKVGAEPLFWDEELEAYAIN 59
          L IVA++   +   AQN+PQD++++HN  RA+VG   + WD  L AYA+N
Sbjct: 9  LVIVAISFLVVATNAQNTPQDYLNSHNTARAQVGVPNVVWDTTLAAYALN 58

[Close]

BLAST of MELO3C018543T1 vs. TAIR10
Match: AT4G07820.1 (AT4G07820.1 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein)

HSP 1 Score: 46.6 bits (109), Expect = 6.2e-06
Identity = 20/44 (45.45%), Postives = 26/44 (59.09%), Query Frame = 1


Query: 13 VALTLTPIVVAQNSPQDFVDAHNAVRAKVGAEPLFWDEELEAYA 57
          +AL+ +  + AQ+ PQD+ +AHN  R  VG  PL W + L AYA
Sbjct: 15 LALSFSVPLKAQDQPQDYFNAHNRARVSVGVSPLMWSQTLTAYA 58

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BLAST of MELO3C018543T1 vs. NCBI nr
Match: gi|449438610|ref|XP_004137081.1| (PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis sativus])

HSP 1 Score: 104.8 bits (260), Expect = 5.4e-20
Identity = 51/58 (87.93%), Postives = 52/58 (89.66%), Query Frame = 1


Query: 1  MALVTALSTLCIVALTLTPIVVAQNSPQDFVDAHNAVRAKVGAEPLFWDEELEAYAIN 59
          MAL T LS LCIVAL LTPIV+AQNSPQDF DAHNAVRAKVGAEPLFWDEELEAYA N
Sbjct: 1  MALATTLSALCIVALALTPIVIAQNSPQDFFDAHNAVRAKVGAEPLFWDEELEAYAKN 58

[Close]

BLAST of MELO3C018543T1 vs. NCBI nr
Match: gi|659110135|ref|XP_008455067.1| (PREDICTED: pathogenesis-related protein 1A-like [Cucumis melo])

HSP 1 Score: 80.1 bits (196), Expect = 1.4e-12
Identity = 35/58 (60.34%), Postives = 47/58 (81.03%), Query Frame = 1


Query: 1  MALVTALSTLCIVALTLTPIVVAQNSPQDFVDAHNAVRAKVGAEPLFWDEELEAYAIN 59
          MAL    S++C++ LTL P++VA N+PQ++VDAHNAVRA+VG +P+FWDEEL  YA N
Sbjct: 29 MALSNIPSSICLIMLTLIPMIVAHNTPQNYVDAHNAVRAEVGVDPVFWDEELAKYAQN 86

[Close]

BLAST of MELO3C018543T1 vs. NCBI nr
Match: gi|778724761|ref|XP_004137082.2| (PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 3.2e-12
Identity = 37/59 (62.71%), Postives = 49/59 (83.05%), Query Frame = 1


Query: 1  MALVTALSTLCIVALTLT-PIVVAQNSPQDFVDAHNAVRAKVGAEPLFWDEELEAYAIN 59
          MAL    S++C++ LTLT P++VA N+PQ++VDAHNAVRA+VGA+P+FWDEEL  YA N
Sbjct: 4  MALSNFPSSICLIMLTLTIPMIVAHNTPQNYVDAHNAVRAEVGADPVFWDEELAKYAQN 62

[Close]

BLAST of MELO3C018543T1 vs. NCBI nr
Match: gi|700188595|gb|KGN43828.1| (hypothetical protein Csa_7G070240 [Cucumis sativus])

HSP 1 Score: 65.9 bits (159), Expect = 2.8e-08
Identity = 31/41 (75.61%), Postives = 34/41 (82.93%), Query Frame = 1


Query: 1  MALVTALSTLCIVALTLTPIVVAQNSPQDFVDAHNAVRAKV 42
          MAL T LS LCIVAL LTPIV+AQNSPQDF DAHNA+  K+
Sbjct: 4  MALATTLSALCIVALALTPIVIAQNSPQDFFDAHNALTLKI 44

[Close]

BLAST of MELO3C018543T1 vs. NCBI nr
Match: gi|694407728|ref|XP_009378591.1| (PREDICTED: pathogenesis-related leaf protein 4-like [Pyrus x bretschneideri])

HSP 1 Score: 63.5 bits (153), Expect = 1.4e-07
Identity = 28/52 (53.85%), Postives = 38/52 (73.08%), Query Frame = 1


Query: 5  TALSTLCIVALTLTPIVVAQNSPQDFVDAHNAVRAKVGAEPLFWDEELEAYA 57
          T+ + +C+++LTL P   AQNSPQD+++AHNA RA+VG  PL WD  L  YA
Sbjct: 6  TSFALVCLISLTLLPSSHAQNSPQDYLNAHNAARAQVGVAPLSWDTNLVNYA 57

The following BLAST results are available for this feature:

BLAST of MELO3C018543T1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PR1_SAMNI	4.3e-09	50.98	Pathogenesis-related protein PR-1 type OS=Sambucus nigra PE=2 SV=1	[more]
PR1C_TOBAC	2.4e-07	44.26	Pathogenesis-related protein 1C OS=Nicotiana tabacum PE=2 SV=3	[more]
PR1A_TOBAC	3.1e-07	45.90	Pathogenesis-related protein 1A OS=Nicotiana tabacum PE=1 SV=1	[more]
PR1B_TOBAC	3.4e-06	63.89	Pathogenesis-related protein 1B OS=Nicotiana tabacum PE=2 SV=1	[more]
PRB1_TOBAC	5.8e-06	43.10	Basic form of pathogenesis-related protein 1 OS=Nicotiana tabacum PE=3 SV=1	[more]

BLAST of MELO3C018543T1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4C6_CUCSA	2.2e-12	62.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070250 PE=3 SV=1	[more]
A0A0A0K2V2_CUCSA	1.9e-08	75.61	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070240 PE=4 SV=1	[more]
I1KL97_SOYBN	1.6e-07	59.57	Uncharacterized protein OS=Glycine max GN=GLYMA_07G186300 PE=3 SV=1	[more]
M0S7L3_MUSAM	2.1e-07	52.83	Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=3 SV=1	[more]
M0S7L2_MUSAM	2.1e-07	50.94	Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=3 SV=1	[more]

BLAST of MELO3C018543T1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G14580.1	4.3e-07	44.07	basic pathogenesis-related protein 1	[more]
AT4G33720.1	5.6e-07	54.55	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-r...	[more]
AT1G50060.1	5.6e-07	46.00	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-r...	[more]
AT4G07820.1	6.2e-06	45.45	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-r...	[more]

BLAST of MELO3C018543T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449438610\|ref\|XP_004137081.1\|	5.4e-20	87.93	PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis sativus]	[more]
gi\|659110135\|ref\|XP_008455067.1\|	1.4e-12	60.34	PREDICTED: pathogenesis-related protein 1A-like [Cucumis melo]	[more]
gi\|778724761\|ref\|XP_004137082.2\|	3.2e-12	62.71	PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis sativus]	[more]
gi\|700188595\|gb\|KGN43828.1\|	2.8e-08	75.61	hypothetical protein Csa_7G070240 [Cucumis sativus]	[more]
gi\|694407728\|ref\|XP_009378591.1\|	1.4e-07	53.85	PREDICTED: pathogenesis-related leaf protein 4-like [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001283	Allrgn_V5/Tpx1
IPR014044	CAP_domain

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C018543	MELO3C018543	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C018543T1	MELO3C018543T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C018543T1.cds1	MELO3C018543T1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001283	Cysteine-rich secretory protein, allergen V5/Tpx-1-related	PANTHER	PTHR10334	CYSTEINE-RICH SECRETORY PROTEIN-RELATED	coord: 1..58 score: 6.5
IPR014044	CAP domain	GENE3D	G3DSA:3.40.33.10		coord: 26..56 score: 7.
IPR014044	CAP domain	unknown	SSF55797	PR-1-like	coord: 13..57 score: 1.
None	No IPR available	PANTHER	PTHR10334:SF223	F2J10.6 PROTEIN-RELATED	coord: 1..58 score: 6.5