MELO3C018543 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C018543
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein
Location	chr1 : 1008030 .. 1008206 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACTCGTCACCGCTCTCTCCACCCTTTGCATCGTTGCACTAACCCTAACCCCAATCGTCGTTGCTCAAAACAGCCCTCAAGACTTCGTCGATGCACACAATGCAGTGCGAGCCAAGGTTGGGGCTGAACCCCTATTTTGGGACGAAGAACTTGAAGCTTACGCTATAAATTAA

mRNA sequence

ATGGCACTCGTCACCGCTCTCTCCACCCTTTGCATCGTTGCACTAACCCTAACCCCAATCGTCGTTGCTCAAAACAGCCCTCAAGACTTCGTCGATGCACACAATGCAGTGCGAGCCAAGGTTGGGGCTGAACCCCTATTTTGGGACGAAGAACTTGAAGCTTACGCTATAAATTAA

Coding sequence (CDS)

ATGGCACTCGTCACCGCTCTCTCCACCCTTTGCATCGTTGCACTAACCCTAACCCCAATCGTCGTTGCTCAAAACAGCCCTCAAGACTTCGTCGATGCACACAATGCAGTGCGAGCCAAGGTTGGGGCTGAACCCCTATTTTGGGACGAAGAACTTGAAGCTTACGCTATAAATTAA

Protein sequence

MALVTALSTLCIVALTLTPIVVAQNSPQDFVDAHNAVRAKVGAEPLFWDEELEAYAIN*

Homology

[Close]

BLAST of MELO3C018543 vs. Swiss-Prot
Match: PR1_SAMNI (Pathogenesis-related protein PR-1 type OS=Sambucus nigra PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 4.3e-09
Identity = 26/51 (50.98%), Postives = 35/51 (68.63%), Query Frame = 1


Query: 6  ALSTLCIVALTLTPIVVAQNSPQDFVDAHNAVRAKVGAEPLFWDEELEAYA 57
          +++ +C+VAL +    VAQNSPQD+VDAHNA R+ V   P+ WDE + A+A
Sbjct: 11 SVALVCVVALVMVQYSVAQNSPQDYVDAHNAARSAVNVGPVTWDESVAAFA 61

[Close]

BLAST of MELO3C018543 vs. Swiss-Prot
Match: PR1C_TOBAC (Pathogenesis-related protein 1C OS=Nicotiana tabacum PE=2 SV=3)

HSP 1 Score: 55.5 bits (132), Expect = 2.4e-07
Identity = 27/61 (44.26%), Postives = 38/61 (62.30%), Query Frame = 1


Query: 3  LVTALSTLCIVALTLTPIVV-----AQNSPQDFVDAHNAVRAKVGAEPLFWDEELEAYAI 59
          L + +S+  +V+  L  +++     AQNS QD++DAHN  RA VG EPL WD+++ AYA 
Sbjct: 5  LFSQMSSFFLVSTLLLFLIISHSCHAQNSQQDYLDAHNTARADVGVEPLTWDDQVAAYAQ 64

[Close]

BLAST of MELO3C018543 vs. Swiss-Prot
Match: PR1A_TOBAC (Pathogenesis-related protein 1A OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.1e-07
Identity = 28/61 (45.90%), Postives = 37/61 (60.66%), Query Frame = 1


Query: 3  LVTALSTLCIVALTLTPIVV-----AQNSPQDFVDAHNAVRAKVGAEPLFWDEELEAYAI 59
          L + L +  +V+  L  +V+     AQNS QD++DAHN  RA VG EPL WD+++ AYA 
Sbjct: 5  LFSQLPSFLLVSTLLLFLVISHSCRAQNSQQDYLDAHNTARADVGVEPLTWDDQVAAYAQ 64

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BLAST of MELO3C018543 vs. Swiss-Prot
Match: PR1B_TOBAC (Pathogenesis-related protein 1B OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 3.4e-06
Identity = 23/36 (63.89%), Postives = 24/36 (66.67%), Query Frame = 1


Query: 23 AQNSPQDFVDAHNAVRAKVGAEPLFWDEELEAYAIN 59
          AQNS QD++DAHN  RA VG EPL WD  + AYA N
Sbjct: 30 AQNSQQDYLDAHNTARADVGVEPLTWDNGVAAYAQN 65

[Close]

BLAST of MELO3C018543 vs. Swiss-Prot
Match: PRB1_TOBAC (Basic form of pathogenesis-related protein 1 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 5.8e-06
Identity = 25/58 (43.10%), Postives = 30/58 (51.72%), Query Frame = 1


Query: 1  MALVTALSTLCIVALTLTPIVVAQNSPQDFVDAHNAVRAKVGAEPLFWDEELEAYAIN 59
          M  +T +    I    L     AQNSPQD+++ HNA R +VG  P+ WD  L AYA N
Sbjct: 1  MGFLTTIVACFITFAILIHSSKAQNSPQDYLNPHNAARRQVGVGPMTWDNRLAAYAQN 58

[Close]

BLAST of MELO3C018543 vs. TrEMBL
Match: A0A0A0K4C6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070250 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.2e-12
Identity = 37/59 (62.71%), Postives = 49/59 (83.05%), Query Frame = 1


Query: 1  MALVTALSTLCIVALTLT-PIVVAQNSPQDFVDAHNAVRAKVGAEPLFWDEELEAYAIN 59
          MAL    S++C++ LTLT P++VA N+PQ++VDAHNAVRA+VGA+P+FWDEEL  YA N
Sbjct: 4  MALSNFPSSICLIMLTLTIPMIVAHNTPQNYVDAHNAVRAEVGADPVFWDEELAKYAQN 62

[Close]

BLAST of MELO3C018543 vs. TrEMBL
Match: A0A0A0K2V2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070240 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.9e-08
Identity = 31/41 (75.61%), Postives = 34/41 (82.93%), Query Frame = 1


Query: 1  MALVTALSTLCIVALTLTPIVVAQNSPQDFVDAHNAVRAKV 42
          MAL T LS LCIVAL LTPIV+AQNSPQDF DAHNA+  K+
Sbjct: 4  MALATTLSALCIVALALTPIVIAQNSPQDFFDAHNALTLKI 44

[Close]

BLAST of MELO3C018543 vs. TrEMBL
Match: I1KL97_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_07G186300 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.6e-07
Identity = 28/47 (59.57%), Postives = 37/47 (78.72%), Query Frame = 1


Query: 10 LCIVALTLTPIVVAQNSPQDFVDAHNAVRAKVGAEPLFWDEELEAYA 57
          L IV +++  I +AQNSP+DF+DAHNA RA+VG EPL WD+ + AYA
Sbjct: 10 LTIVIISMCSISLAQNSPKDFLDAHNAARAEVGVEPLAWDDTVAAYA 56

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BLAST of MELO3C018543 vs. TrEMBL
Match: M0S7L3_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.1e-07
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 1


Query: 6  ALSTLCIVALTLTPIVVAQNSPQDFVDAHNAVRAKVGAEPLFWDEELEAYAIN 59
          A + +C +AL +    +AQNSPQDFVDAHN+ RA VG  P+ WD+ + AYA N
Sbjct: 7  ASALVCAMALAMACTTLAQNSPQDFVDAHNSARAAVGVGPVSWDDNVAAYAQN 59

[Close]

BLAST of MELO3C018543 vs. TrEMBL
Match: M0S7L2_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.1e-07
Identity = 27/53 (50.94%), Postives = 38/53 (71.70%), Query Frame = 1


Query: 6  ALSTLCIVALTLTPIVVAQNSPQDFVDAHNAVRAKVGAEPLFWDEELEAYAIN 59
          A + +C++AL +    +AQNSP+DFVDAHN  RA VG  P+ WD+++ AYA N
Sbjct: 7  ASALVCVMALAMAYTTLAQNSPRDFVDAHNTARAAVGVGPVSWDDKVTAYAEN 59

[Close]

BLAST of MELO3C018543 vs. TAIR10
Match: AT2G14580.1 (AT2G14580.1 basic pathogenesis-related protein 1)

HSP 1 Score: 50.4 bits (119), Expect = 4.3e-07
Identity = 26/59 (44.07%), Postives = 35/59 (59.32%), Query Frame = 1


Query: 4  VTALSTLCIVALTLTPIVV----AQNSPQDFVDAHNAVRAKVGAEPLFWDEELEAYAIN 59
          VT+ S + I+   L   +V    AQ+S QD+V+AHN  R+++G  P+ WDE L AYA N
Sbjct: 3  VTSYSRILIILAALVGALVVPLKAQDSQQDYVNAHNQARSQIGVGPMQWDEGLAAYARN 61

[Close]

BLAST of MELO3C018543 vs. TAIR10
Match: AT4G33720.1 (AT4G33720.1 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein)

HSP 1 Score: 50.1 bits (118), Expect = 5.6e-07
Identity = 24/44 (54.55%), Postives = 28/44 (63.64%), Query Frame = 1


Query: 15 LTLTPIVVAQNSPQDFVDAHNAVRAKVGAEPLFWDEELEAYAIN 59
          L L   + AQ+SPQDF+  HN  RA+VG  PL WDE++ AYA N
Sbjct: 18 LVLIVHLKAQDSPQDFLAVHNRARAEVGVGPLRWDEKVAAYARN 61

[Close]

BLAST of MELO3C018543 vs. TAIR10
Match: AT1G50060.1 (AT1G50060.1 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein)

HSP 1 Score: 50.1 bits (118), Expect = 5.6e-07
Identity = 23/50 (46.00%), Postives = 32/50 (64.00%), Query Frame = 1


Query: 10 LCIVALTLTPIVV-AQNSPQDFVDAHNAVRAKVGAEPLFWDEELEAYAIN 59
          L IVA++   +   AQN+PQD++++HN  RA+VG   + WD  L AYA+N
Sbjct: 9  LVIVAISFLVVATNAQNTPQDYLNSHNTARAQVGVPNVVWDTTLAAYALN 58

[Close]

BLAST of MELO3C018543 vs. TAIR10
Match: AT4G07820.1 (AT4G07820.1 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein)

HSP 1 Score: 46.6 bits (109), Expect = 6.2e-06
Identity = 20/44 (45.45%), Postives = 26/44 (59.09%), Query Frame = 1


Query: 13 VALTLTPIVVAQNSPQDFVDAHNAVRAKVGAEPLFWDEELEAYA 57
          +AL+ +  + AQ+ PQD+ +AHN  R  VG  PL W + L AYA
Sbjct: 15 LALSFSVPLKAQDQPQDYFNAHNRARVSVGVSPLMWSQTLTAYA 58

[Close]

BLAST of MELO3C018543 vs. NCBI nr
Match: gi|449438610|ref|XP_004137081.1| (PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis sativus])

HSP 1 Score: 104.8 bits (260), Expect = 5.4e-20
Identity = 51/58 (87.93%), Postives = 52/58 (89.66%), Query Frame = 1


Query: 1  MALVTALSTLCIVALTLTPIVVAQNSPQDFVDAHNAVRAKVGAEPLFWDEELEAYAIN 59
          MAL T LS LCIVAL LTPIV+AQNSPQDF DAHNAVRAKVGAEPLFWDEELEAYA N
Sbjct: 1  MALATTLSALCIVALALTPIVIAQNSPQDFFDAHNAVRAKVGAEPLFWDEELEAYAKN 58

[Close]

BLAST of MELO3C018543 vs. NCBI nr
Match: gi|659110135|ref|XP_008455067.1| (PREDICTED: pathogenesis-related protein 1A-like [Cucumis melo])

HSP 1 Score: 80.1 bits (196), Expect = 1.4e-12
Identity = 35/58 (60.34%), Postives = 47/58 (81.03%), Query Frame = 1


Query: 1  MALVTALSTLCIVALTLTPIVVAQNSPQDFVDAHNAVRAKVGAEPLFWDEELEAYAIN 59
          MAL    S++C++ LTL P++VA N+PQ++VDAHNAVRA+VG +P+FWDEEL  YA N
Sbjct: 29 MALSNIPSSICLIMLTLIPMIVAHNTPQNYVDAHNAVRAEVGVDPVFWDEELAKYAQN 86

[Close]

BLAST of MELO3C018543 vs. NCBI nr
Match: gi|778724761|ref|XP_004137082.2| (PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 3.2e-12
Identity = 37/59 (62.71%), Postives = 49/59 (83.05%), Query Frame = 1


Query: 1  MALVTALSTLCIVALTLT-PIVVAQNSPQDFVDAHNAVRAKVGAEPLFWDEELEAYAIN 59
          MAL    S++C++ LTLT P++VA N+PQ++VDAHNAVRA+VGA+P+FWDEEL  YA N
Sbjct: 4  MALSNFPSSICLIMLTLTIPMIVAHNTPQNYVDAHNAVRAEVGADPVFWDEELAKYAQN 62

[Close]

BLAST of MELO3C018543 vs. NCBI nr
Match: gi|700188595|gb|KGN43828.1| (hypothetical protein Csa_7G070240 [Cucumis sativus])

HSP 1 Score: 65.9 bits (159), Expect = 2.8e-08
Identity = 31/41 (75.61%), Postives = 34/41 (82.93%), Query Frame = 1


Query: 1  MALVTALSTLCIVALTLTPIVVAQNSPQDFVDAHNAVRAKV 42
          MAL T LS LCIVAL LTPIV+AQNSPQDF DAHNA+  K+
Sbjct: 4  MALATTLSALCIVALALTPIVIAQNSPQDFFDAHNALTLKI 44

[Close]

BLAST of MELO3C018543 vs. NCBI nr
Match: gi|694407728|ref|XP_009378591.1| (PREDICTED: pathogenesis-related leaf protein 4-like [Pyrus x bretschneideri])

HSP 1 Score: 63.5 bits (153), Expect = 1.4e-07
Identity = 28/52 (53.85%), Postives = 38/52 (73.08%), Query Frame = 1


Query: 5  TALSTLCIVALTLTPIVVAQNSPQDFVDAHNAVRAKVGAEPLFWDEELEAYA 57
          T+ + +C+++LTL P   AQNSPQD+++AHNA RA+VG  PL WD  L  YA
Sbjct: 6  TSFALVCLISLTLLPSSHAQNSPQDYLNAHNAARAQVGVAPLSWDTNLVNYA 57

The following BLAST results are available for this feature:

BLAST of MELO3C018543 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PR1_SAMNI	4.3e-09	50.98	Pathogenesis-related protein PR-1 type OS=Sambucus nigra PE=2 SV=1	[more]
PR1C_TOBAC	2.4e-07	44.26	Pathogenesis-related protein 1C OS=Nicotiana tabacum PE=2 SV=3	[more]
PR1A_TOBAC	3.1e-07	45.90	Pathogenesis-related protein 1A OS=Nicotiana tabacum PE=1 SV=1	[more]
PR1B_TOBAC	3.4e-06	63.89	Pathogenesis-related protein 1B OS=Nicotiana tabacum PE=2 SV=1	[more]
PRB1_TOBAC	5.8e-06	43.10	Basic form of pathogenesis-related protein 1 OS=Nicotiana tabacum PE=3 SV=1	[more]

BLAST of MELO3C018543 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4C6_CUCSA	2.2e-12	62.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070250 PE=3 SV=1	[more]
A0A0A0K2V2_CUCSA	1.9e-08	75.61	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070240 PE=4 SV=1	[more]
I1KL97_SOYBN	1.6e-07	59.57	Uncharacterized protein OS=Glycine max GN=GLYMA_07G186300 PE=3 SV=1	[more]
M0S7L3_MUSAM	2.1e-07	52.83	Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=3 SV=1	[more]
M0S7L2_MUSAM	2.1e-07	50.94	Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=3 SV=1	[more]

BLAST of MELO3C018543 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G14580.1	4.3e-07	44.07	basic pathogenesis-related protein 1	[more]
AT4G33720.1	5.6e-07	54.55	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-r...	[more]
AT1G50060.1	5.6e-07	46.00	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-r...	[more]
AT4G07820.1	6.2e-06	45.45	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-r...	[more]

BLAST of MELO3C018543 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449438610\|ref\|XP_004137081.1\|	5.4e-20	87.93	PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis sativus]	[more]
gi\|659110135\|ref\|XP_008455067.1\|	1.4e-12	60.34	PREDICTED: pathogenesis-related protein 1A-like [Cucumis melo]	[more]
gi\|778724761\|ref\|XP_004137082.2\|	3.2e-12	62.71	PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis sativus]	[more]
gi\|700188595\|gb\|KGN43828.1\|	2.8e-08	75.61	hypothetical protein Csa_7G070240 [Cucumis sativus]	[more]
gi\|694407728\|ref\|XP_009378591.1\|	1.4e-07	53.85	PREDICTED: pathogenesis-related leaf protein 4-like [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001283	Allrgn_V5/Tpx1
IPR014044	CAP_domain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C018543T1	MELO3C018543T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001283	Cysteine-rich secretory protein, allergen V5/Tpx-1-related	PANTHER	PTHR10334	CYSTEINE-RICH SECRETORY PROTEIN-RELATED	coord: 1..58 score: 6.5
IPR014044	CAP domain	GENE3D	G3DSA:3.40.33.10		coord: 26..56 score: 7.
IPR014044	CAP domain	unknown	SSF55797	PR-1-like	coord: 13..57 score: 1.
None	No IPR available	PANTHER	PTHR10334:SF223	F2J10.6 PROTEIN-RELATED	coord: 1..58 score: 6.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C018543	Bhi05G000855	Wax gourd	mewgoB225
MELO3C018543	CsaV3_7G007590	Cucumber (Chinese Long) v3	cucmeB548

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C018543	Silver-seed gourd	carmeB0185
MELO3C018543	Silver-seed gourd	carmeB0460
MELO3C018543	Silver-seed gourd	carmeB0726
MELO3C018543	Cucumber (Chinese Long) v3	cucmeB276
MELO3C018543	Watermelon (97103) v2	mewmbB174
MELO3C018543	Watermelon (97103) v2	mewmbB180
MELO3C018543	Watermelon (97103) v2	mewmbB206
MELO3C018543	Wax gourd	mewgoB198
MELO3C018543	Wax gourd	mewgoB228
MELO3C018543	Melon (DHL92) v3.5.1	memeB079
MELO3C018543	Melon (DHL92) v3.5.1	memeB094
MELO3C018543	Melon (DHL92) v3.5.1	memeB098
MELO3C018543	Cucumber (Gy14) v1	cgymeB379
MELO3C018543	Cucumber (Gy14) v1	cgymeB644
MELO3C018543	Cucurbita maxima (Rimu)	cmameB098
MELO3C018543	Cucurbita maxima (Rimu)	cmameB463
MELO3C018543	Cucurbita maxima (Rimu)	cmameB672
MELO3C018543	Cucurbita moschata (Rifu)	cmomeB085
MELO3C018543	Cucurbita moschata (Rifu)	cmomeB398
MELO3C018543	Cucurbita moschata (Rifu)	cmomeB454
MELO3C018543	Cucurbita moschata (Rifu)	cmomeB665
MELO3C018543	Cucurbita moschata (Rifu)	cmomeB709
MELO3C018543	Wild cucumber (PI 183967)	cpimeB105
MELO3C018543	Wild cucumber (PI 183967)	cpimeB538
MELO3C018543	Wild cucumber (PI 183967)	cpimeB270
MELO3C018543	Cucumber (Chinese Long) v2	cumeB530
MELO3C018543	Watermelon (Charleston Gray)	mewcgB189
MELO3C018543	Watermelon (Charleston Gray)	mewcgB197
MELO3C018543	Watermelon (Charleston Gray)	mewcgB223
MELO3C018543	Watermelon (97103) v1	mewmB217
MELO3C018543	Watermelon (97103) v1	mewmB218
MELO3C018543	Watermelon (97103) v1	mewmB240
MELO3C018543	Watermelon (97103) v1	mewmB244
MELO3C018543	Cucurbita pepo (Zucchini)	cpemeB081
MELO3C018543	Cucurbita pepo (Zucchini)	cpemeB225
MELO3C018543	Cucurbita pepo (Zucchini)	cpemeB394
MELO3C018543	Cucurbita pepo (Zucchini)	cpemeB604
MELO3C018543	Bottle gourd (USVL1VR-Ls)	lsimeB247
MELO3C018543	Bottle gourd (USVL1VR-Ls)	lsimeB253
MELO3C018543	Bottle gourd (USVL1VR-Ls)	lsimeB466
MELO3C018543	Cucumber (Gy14) v2	cgybmeB090
MELO3C018543	Cucumber (Gy14) v2	cgybmeB235
MELO3C018543	Cucumber (Gy14) v2	cgybmeB468