MELO3C018228T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C018228T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionBeta-galactosidase
Locationchr4 : 8097997 .. 8098839 (-)
Sequence length650
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCAAACACAAATTTGATCAAGAGTTCAAATAATTAGAAATAATGGGAAAAGTTGTGGGTAACTCTGCCAAGATGGTTGTTTTGCTCTTCCTTTTCACCCTCATGCTTTCCATCAATGGTAATTAACACCACTATTATCAACCCTTTTCACCCAATCTTACTTAATTTTTCATCTCAAACAAAAATTTTGAATTATTGTTAAAAAAAAAAAACACATAAAAATGTAAATAAAAAGAAACTTATTCAATTTGTATACAACGTAAATTTTGTTTTTGTTTTCTCTCTCTTTTTGGCTCATGGTAACCACACAGAAAAGCAAGGGGCGGTGGAGGCAAAGTTGTGTCAGGAGCGGAGTAAGACGTGGTCGGGATATTGCGCCATCACGAGCCATTGCGACCGACAATGCAAGAATTGGGAAGGTGCAGTTCATGGAGCTTGCCACGATCACGTTCCTGGAAAGGCTTGTTATTGCTACTACAACTGTTGAAAACCATGCAATAATTCCTTATGAATTGATGATGATAATCTCCATCTCCATCTTATATATTCCCCCTTTTCAGAAAAATAAAAACTGTGTAATTTTCTTATGTGGGTGTGAAGGGATATCAATATGGTAATATTAATTAGTTTTTAATTAGTGTTTTTTTAAGTGTGAGAAGTCTATGTAGTTGGAAAAGTGTGTATTGTGGTTATTGTGATAAATATGCTGTTATTTATCTTTTTAGCAGCTTGTTTGTGTGTCTGTCTTCGTCTTCATATCAAAATAAAATGGCCTTGCTGGTTGTCTCCCACTATACAGTTATCTTTTTCTTTCCATACAAGATGGTTTACATCATAAATCTAT

mRNA sequence

GCAAACACAAATTTGATCAAGAGTTCAAATAATTAGAAATAATGGGAAAAGTTGTGGGTAACTCTGCCAAGATGGTTGTTTTGCTCTTCCTTTTCACCCTCATGCTTTCCATCAATGAAAAGCAAGGGGCGGTGGAGGCAAAGTTGTGTCAGGAGCGGAGTAAGACGTGGTCGGGATATTGCGCCATCACGAGCCATTGCGACCGACAATGCAAGAATTGGGAAGGTGCAGTTCATGGAGCTTGCCACGATCACGTTCCTGGAAAGGCTTGTTATTGCTACTACAACTGTTGAAAACCATGCAATAATTCCTTATGAATTGATGATGATAATCTCCATCTCCATCTTATATATTCCCCCTTTTCAGAAAAATAAAAACTGTGTAATTTTCTTATGTGGGTGTGAAGGGATATCAATATGGTAATATTAATTAGTTTTTAATTAGTGTTTTTTTAAGTGTGAGAAGTCTATGTAGTTGGAAAAGTGTGTATTGTGGTTATTGTGATAAATATGCTGTTATTTATCTTTTTAGCAGCTTGTTTGTGTGTCTGTCTTCGTCTTCATATCAAAATAAAATGGCCTTGCTGGTTGTCTCCCACTATACAGTTATCTTTTTCTTTCCATACAAGATGGTTTACATCATAAATCTAT

Coding sequence (CDS)

ATGAAAAGCAAGGGGCGGTGGAGGCAAAGTTGTGTCAGGAGCGGAGTAAGACGTGGTCGGGATATTGCGCCATCACGAGCCATTGCGACCGACAATGCAAGAATTGGGAAGGTGCAGTTCATGGAGCTTGCCACGATCACGTTCCTGGAAAGGCTTGTTATTGCTACTACAACTGTTGAAAACCATGCAATAATTCCTTATGAATTGATGATGATAATCTCCATCTCCATCTTATATATTCCCCCTTTTCAGAAAAATAAAAACTGTGTAATTTTCTTATGTGGGTGTGAAGGGATATCAATATGGTAA

Protein sequence

MKSKGRWRQSCVRSGVRRGRDIAPSRAIATDNARIGKVQFMELATITFLERLVIATTTVENHAIIPYELMMIISISILYIPPFQKNKNCVIFLCGCEGISIW*
Homology
[Close]
BLAST of MELO3C018228T1 vs. TrEMBL
Match: A0A0A0LDM9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G851930 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.9e-23
Identity = 58/68 (85.29%), Postives = 62/68 (91.18%), Query Frame = 1 

Query: 1  MKSKGRWRQSCVRSGVRRGRDIAPSRAIATDNARIGKVQFMELATITFLERLVIATTTVE 60
          MK +G WRQ CVRSG RRGRDIA SRAIAT+NARIGKVQ MELATITFLE+LVIATTTVE
Sbjct: 1  MKREGVWRQCCVRSGARRGRDIARSRAIATNNARIGKVQIMELATITFLEKLVIATTTVE 60

Query: 61 NHAIIPYE 69
          NHAIIP+E
Sbjct: 61 NHAIIPHE 68

[Close]
BLAST of MELO3C018228T1 vs. NCBI nr
Match: gi|700204760|gb|KGN59893.1| (hypothetical protein Csa_3G851930 [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 4.1e-23
Identity = 58/68 (85.29%), Postives = 62/68 (91.18%), Query Frame = 1 

Query: 1  MKSKGRWRQSCVRSGVRRGRDIAPSRAIATDNARIGKVQFMELATITFLERLVIATTTVE 60
          MK +G WRQ CVRSG RRGRDIA SRAIAT+NARIGKVQ MELATITFLE+LVIATTTVE
Sbjct: 1  MKREGVWRQCCVRSGARRGRDIARSRAIATNNARIGKVQIMELATITFLEKLVIATTTVE 60

Query: 61 NHAIIPYE 69
          NHAIIP+E
Sbjct: 61 NHAIIPHE 68

The following BLAST results are available for this feature:
BLAST of MELO3C018228T1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LDM9_CUCSA2.9e-2385.29Uncharacterized protein OS=Cucumis sativus GN=Csa_3G851930 PE=4 SV=1[more]
BLAST of MELO3C018228T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700204760|gb|KGN59893.1|4.1e-2385.29hypothetical protein Csa_3G851930 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C018228MELO3C018228gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C018228T1MELO3C018228T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C018228T1.cds2MELO3C018228T1.cds2CDS
MELO3C018228T1.cds1MELO3C018228T1.cds1CDS