MELO3C018228 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C018228
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionBeta-galactosidase
Locationchr4 : 8097997 .. 8098839 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCAAACACAAATTTGATCAAGAGTTCAAATAATTAGAAATAATGGGAAAAGTTGTGGGTAACTCTGCCAAGATGGTTGTTTTGCTCTTCCTTTTCACCCTCATGCTTTCCATCAATGGTAATTAACACCACTATTATCAACCCTTTTCACCCAATCTTACTTAATTTTTCATCTCAAACAAAAATTTTGAATTATTGTTAAAAAAAAAAAACACATAAAAATGTAAATAAAAAGAAACTTATTCAATTTGTATACAACGTAAATTTTGTTTTTGTTTTCTCTCTCTTTTTGGCTCATGGTAACCACACAGAAAAGCAAGGGGCGGTGGAGGCAAAGTTGTGTCAGGAGCGGAGTAAGACGTGGTCGGGATATTGCGCCATCACGAGCCATTGCGACCGACAATGCAAGAATTGGGAAGGTGCAGTTCATGGAGCTTGCCACGATCACGTTCCTGGAAAGGCTTGTTATTGCTACTACAACTGTTGAAAACCATGCAATAATTCCTTATGAATTGATGATGATAATCTCCATCTCCATCTTATATATTCCCCCTTTTCAGAAAAATAAAAACTGTGTAATTTTCTTATGTGGGTGTGAAGGGATATCAATATGGTAATATTAATTAGTTTTTAATTAGTGTTTTTTTAAGTGTGAGAAGTCTATGTAGTTGGAAAAGTGTGTATTGTGGTTATTGTGATAAATATGCTGTTATTTATCTTTTTAGCAGCTTGTTTGTGTGTCTGTCTTCGTCTTCATATCAAAATAAAATGGCCTTGCTGGTTGTCTCCCACTATACAGTTATCTTTTTCTTTCCATACAAGATGGTTTACATCATAAATCTAT

mRNA sequence

GCAAACACAAATTTGATCAAGAGTTCAAATAATTAGAAATAATGGGAAAAGTTGTGGGTAACTCTGCCAAGATGGTTGTTTTGCTCTTCCTTTTCACCCTCATGCTTTCCATCAATGAAAAGCAAGGGGCGGTGGAGGCAAAGTTGTGTCAGGAGCGGAGTAAGACGTGGTCGGGATATTGCGCCATCACGAGCCATTGCGACCGACAATGCAAGAATTGGGAAGGTGCAGTTCATGGAGCTTGCCACGATCACGTTCCTGGAAAGGCTTGTTATTGCTACTACAACTGTTGAAAACCATGCAATAATTCCTTATGAATTGATGATGATAATCTCCATCTCCATCTTATATATTCCCCCTTTTCAGAAAAATAAAAACTGTGTAATTTTCTTATGTGGGTGTGAAGGGATATCAATATGGTAATATTAATTAGTTTTTAATTAGTGTTTTTTTAAGTGTGAGAAGTCTATGTAGTTGGAAAAGTGTGTATTGTGGTTATTGTGATAAATATGCTGTTATTTATCTTTTTAGCAGCTTGTTTGTGTGTCTGTCTTCGTCTTCATATCAAAATAAAATGGCCTTGCTGGTTGTCTCCCACTATACAGTTATCTTTTTCTTTCCATACAAGATGGTTTACATCATAAATCTAT

Coding sequence (CDS)

ATGAAAAGCAAGGGGCGGTGGAGGCAAAGTTGTGTCAGGAGCGGAGTAAGACGTGGTCGGGATATTGCGCCATCACGAGCCATTGCGACCGACAATGCAAGAATTGGGAAGGTGCAGTTCATGGAGCTTGCCACGATCACGTTCCTGGAAAGGCTTGTTATTGCTACTACAACTGTTGAAAACCATGCAATAATTCCTTATGAATTGATGATGATAATCTCCATCTCCATCTTATATATTCCCCCTTTTCAGAAAAATAAAAACTGTGTAATTTTCTTATGTGGGTGTGAAGGGATATCAATATGGTAA

Protein sequence

MKSKGRWRQSCVRSGVRRGRDIAPSRAIATDNARIGKVQFMELATITFLERLVIATTTVENHAIIPYELMMIISISILYIPPFQKNKNCVIFLCGCEGISIW*
Homology
[Close]
BLAST of MELO3C018228 vs. TrEMBL
Match: A0A0A0LDM9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G851930 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.9e-23
Identity = 58/68 (85.29%), Postives = 62/68 (91.18%), Query Frame = 1 

Query: 1  MKSKGRWRQSCVRSGVRRGRDIAPSRAIATDNARIGKVQFMELATITFLERLVIATTTVE 60
          MK +G WRQ CVRSG RRGRDIA SRAIAT+NARIGKVQ MELATITFLE+LVIATTTVE
Sbjct: 1  MKREGVWRQCCVRSGARRGRDIARSRAIATNNARIGKVQIMELATITFLEKLVIATTTVE 60

Query: 61 NHAIIPYE 69
          NHAIIP+E
Sbjct: 61 NHAIIPHE 68

[Close]
BLAST of MELO3C018228 vs. NCBI nr
Match: gi|700204760|gb|KGN59893.1| (hypothetical protein Csa_3G851930 [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 4.1e-23
Identity = 58/68 (85.29%), Postives = 62/68 (91.18%), Query Frame = 1 

Query: 1  MKSKGRWRQSCVRSGVRRGRDIAPSRAIATDNARIGKVQFMELATITFLERLVIATTTVE 60
          MK +G WRQ CVRSG RRGRDIA SRAIAT+NARIGKVQ MELATITFLE+LVIATTTVE
Sbjct: 1  MKREGVWRQCCVRSGARRGRDIARSRAIATNNARIGKVQIMELATITFLEKLVIATTTVE 60

Query: 61 NHAIIPYE 69
          NHAIIP+E
Sbjct: 61 NHAIIPHE 68

The following BLAST results are available for this feature:
BLAST of MELO3C018228 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LDM9_CUCSA2.9e-2385.29Uncharacterized protein OS=Cucumis sativus GN=Csa_3G851930 PE=4 SV=1[more]
BLAST of MELO3C018228 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700204760|gb|KGN59893.1|4.1e-2385.29hypothetical protein Csa_3G851930 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006952 defense response
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU46546melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C018228T1MELO3C018228T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU46546MU46546transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C018228Csa3G851930Cucumber (Chinese Long) v2cumeB222
MELO3C018228ClCG11G018310Watermelon (Charleston Gray)mewcgB320
MELO3C018228CSPI03G42100Wild cucumber (PI 183967)cpimeB215
MELO3C018228CmoCh09G008750Cucurbita moschata (Rifu)cmomeB022
MELO3C018228CsaV3_3G044500Cucumber (Chinese Long) v3cucmeB219
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C018228Silver-seed gourdcarmeB0312
MELO3C018228Silver-seed gourdcarmeB0891
MELO3C018228Watermelon (97103) v2mewmbB321
MELO3C018228Wax gourdmewgoB436
MELO3C018228Cucumber (Gy14) v1cgymeB559
MELO3C018228Cucurbita maxima (Rimu)cmameB033
MELO3C018228Cucurbita maxima (Rimu)cmameB428
MELO3C018228Cucurbita moschata (Rifu)cmomeB418
MELO3C018228Watermelon (97103) v1mewmB384
MELO3C018228Cucurbita pepo (Zucchini)cpemeB519
MELO3C018228Cucurbita pepo (Zucchini)cpemeB727
MELO3C018228Bottle gourd (USVL1VR-Ls)lsimeB312
MELO3C018228Cucumber (Gy14) v2cgybmeB185