MELO3C018130T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C018130T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRibosomal RNA large subunit methyltransferase K/L
Locationchr4 : 10051346 .. 10051777 (-)
Sequence length276
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAGAAGGTTTGTTCTCTACGCTGTACTTCAATTCATAAAATGTACTATATTTAGTAAATTCATAATATAACCTTGCTGAACAGGATAGTATTGAAAGTGAACAAGATAAACAAGAAAAACAAGATGAAGATGAAGGACAAAGTGAGACATACGTGAATGAAGAATGTAGTTCAGGGACAAAAGAAACAAGTGAAACAAATGAAGAATCAAAAGAGAATAGAAATAGAAAAAAGGATGCGACAAAGGGAAAGAAGGTGACAATCTATAACATCTGGTAAATGTAAAAGTTATATGGAATTTTGCTATCAATTTCCATTTTATAACATAGGTCAAGAGTGCTAACAAGGAAGAAAAGGCCAAAGAGGATAGAAGACGAAAAGGGAAAGCACCAATGACACAAGAAAAAGCTGAGGTATGTGTGATATAG

mRNA sequence

ATGAAAAGAAGTATTGAAAGTGAACAAGATAAACAAGAAAAACAAGATGAAGATGAAGGACAAAGTGAGACATACGTGAATGAAGAATGTAGTTCAGGGACAAAAGAAACAAGTGAAACAAATGAAGAATCAAAAGAGAATAGAAATAGAAAAAAGGATGCGACAAAGGGAAAGAAGGTCAAGAGTGCTAACAAGGAAGAAAAGGCCAAAGAGGATAGAAGACGAAAAGGGAAAGCACCAATGACACAAGAAAAAGCTGAGGTATGTGTGATATAG

Coding sequence (CDS)

ATGAAAAGAAGTATTGAAAGTGAACAAGATAAACAAGAAAAACAAGATGAAGATGAAGGACAAAGTGAGACATACGTGAATGAAGAATGTAGTTCAGGGACAAAAGAAACAAGTGAAACAAATGAAGAATCAAAAGAGAATAGAAATAGAAAAAAGGATGCGACAAAGGGAAAGAAGGTCAAGAGTGCTAACAAGGAAGAAAAGGCCAAAGAGGATAGAAGACGAAAAGGGAAAGCACCAATGACACAAGAAAAAGCTGAGGTATGTGTGATATAG

Protein sequence

MKRSIESEQDKQEKQDEDEGQSETYVNEECSSGTKETSETNEESKENRNRKKDATKGKKVKSANKEEKAKEDRRRKGKAPMTQEKAEVCVI*
Homology
[Close]
BLAST of MELO3C018130T1 vs. TrEMBL
Match: A0A0A0LTN1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G302170 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.5e-12
Identity = 43/73 (58.90%), Postives = 52/73 (71.23%), Query Frame = 1 

Query: 2  KRSIESEQDKQEKQDEDE-GQSETYVNEECSSGTKETSETNEESKENRNRKKDATKGKKV 61
          K  IESE+D+Q K+D+DE GQ +T +NEE +S TKETS+ NE S  N   KK   KGKKV
Sbjct: 19 KEDIESEEDEQGKEDKDEEGQGKTTLNEESNSSTKETSDQNEGSMNN---KKSKEKGKKV 78

Query: 62 KSANKEEKAKEDR 74
          K+  KEEK KEDR
Sbjct: 79 KTTKKEEKGKEDR 88

[Close]
BLAST of MELO3C018130T1 vs. NCBI nr
Match: gi|659072262|ref|XP_008464573.1| (PREDICTED: nucleolar protein 58-like [Cucumis melo])

HSP 1 Score: 79.7 bits (195), Expect = 2.9e-12
Identity = 46/98 (46.94%), Postives = 65/98 (66.33%), Query Frame = 1 

Query: 2   KRSIESEQDKQEKQDEDEGQS--------ETYVNEECSSGTKETSETNEESKENRNRKKD 61
           K++ ESE+ +Q +++  +G+         E  V+E+ SS T   SE +E  ++N+ RKK 
Sbjct: 61  KKNTESEEVEQGEEEVKQGEEDNDGKREGEIVVDEDFSSWT---SEQDERLRDNKKRKKI 120

Query: 62  ATKGKKVKSANKEEKAKEDRRRKGKAPMTQEKAEVCVI 92
             KGKKVK+  KE+KAKE +RRKGKA M QEK+EVCVI
Sbjct: 121 TKKGKKVKAVKKEQKAKEYQRRKGKALMKQEKSEVCVI 155

[Close]
BLAST of MELO3C018130T1 vs. NCBI nr
Match: gi|700210194|gb|KGN65290.1| (hypothetical protein Csa_1G302170 [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 5.0e-12
Identity = 43/73 (58.90%), Postives = 52/73 (71.23%), Query Frame = 1 

Query: 2  KRSIESEQDKQEKQDEDE-GQSETYVNEECSSGTKETSETNEESKENRNRKKDATKGKKV 61
          K  IESE+D+Q K+D+DE GQ +T +NEE +S TKETS+ NE S  N   KK   KGKKV
Sbjct: 19 KEDIESEEDEQGKEDKDEEGQGKTTLNEESNSSTKETSDQNEGSMNN---KKSKEKGKKV 78

Query: 62 KSANKEEKAKEDR 74
          K+  KEEK KEDR
Sbjct: 79 KTTKKEEKGKEDR 88

The following BLAST results are available for this feature:
BLAST of MELO3C018130T1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTN1_CUCSA3.5e-1258.90Uncharacterized protein OS=Cucumis sativus GN=Csa_1G302170 PE=4 SV=1[more]
BLAST of MELO3C018130T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659072262|ref|XP_008464573.1|2.9e-1246.94PREDICTED: nucleolar protein 58-like [Cucumis melo][more]
gi|700210194|gb|KGN65290.1|5.0e-1258.90hypothetical protein Csa_1G302170 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C018130MELO3C018130gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C018130T1MELO3C018130T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C018130T1.cds3MELO3C018130T1.cds3CDS
MELO3C018130T1.cds2MELO3C018130T1.cds2CDS
MELO3C018130T1.cds1MELO3C018130T1.cds1CDS