MELO3C018130 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C018130
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Ribosomal RNA large subunit methyltransferase K/L
Location	chr4 : 10051346 .. 10051777 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAGAAGGTTTGTTCTCTACGCTGTACTTCAATTCATAAAATGTACTATATTTAGTAAATTCATAATATAACCTTGCTGAACAGGATAGTATTGAAAGTGAACAAGATAAACAAGAAAAACAAGATGAAGATGAAGGACAAAGTGAGACATACGTGAATGAAGAATGTAGTTCAGGGACAAAAGAAACAAGTGAAACAAATGAAGAATCAAAAGAGAATAGAAATAGAAAAAAGGATGCGACAAAGGGAAAGAAGGTGACAATCTATAACATCTGGTAAATGTAAAAGTTATATGGAATTTTGCTATCAATTTCCATTTTATAACATAGGTCAAGAGTGCTAACAAGGAAGAAAAGGCCAAAGAGGATAGAAGACGAAAAGGGAAAGCACCAATGACACAAGAAAAAGCTGAGGTATGTGTGATATAG

mRNA sequence

ATGAAAAGAAGTATTGAAAGTGAACAAGATAAACAAGAAAAACAAGATGAAGATGAAGGACAAAGTGAGACATACGTGAATGAAGAATGTAGTTCAGGGACAAAAGAAACAAGTGAAACAAATGAAGAATCAAAAGAGAATAGAAATAGAAAAAAGGATGCGACAAAGGGAAAGAAGGTCAAGAGTGCTAACAAGGAAGAAAAGGCCAAAGAGGATAGAAGACGAAAAGGGAAAGCACCAATGACACAAGAAAAAGCTGAGGTATGTGTGATATAG

Coding sequence (CDS)

ATGAAAAGAAGTATTGAAAGTGAACAAGATAAACAAGAAAAACAAGATGAAGATGAAGGACAAAGTGAGACATACGTGAATGAAGAATGTAGTTCAGGGACAAAAGAAACAAGTGAAACAAATGAAGAATCAAAAGAGAATAGAAATAGAAAAAAGGATGCGACAAAGGGAAAGAAGGTCAAGAGTGCTAACAAGGAAGAAAAGGCCAAAGAGGATAGAAGACGAAAAGGGAAAGCACCAATGACACAAGAAAAAGCTGAGGTATGTGTGATATAG

Protein sequence

MKRSIESEQDKQEKQDEDEGQSETYVNEECSSGTKETSETNEESKENRNRKKDATKGKKVKSANKEEKAKEDRRRKGKAPMTQEKAEVCVI*

Homology

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BLAST of MELO3C018130 vs. TrEMBL
Match: A0A0A0LTN1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G302170 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.5e-12
Identity = 43/73 (58.90%), Postives = 52/73 (71.23%), Query Frame = 1


Query: 2  KRSIESEQDKQEKQDEDE-GQSETYVNEECSSGTKETSETNEESKENRNRKKDATKGKKV 61
          K  IESE+D+Q K+D+DE GQ +T +NEE +S TKETS+ NE S  N   KK   KGKKV
Sbjct: 19 KEDIESEEDEQGKEDKDEEGQGKTTLNEESNSSTKETSDQNEGSMNN---KKSKEKGKKV 78

Query: 62 KSANKEEKAKEDR 74
          K+  KEEK KEDR
Sbjct: 79 KTTKKEEKGKEDR 88

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BLAST of MELO3C018130 vs. NCBI nr
Match: gi|659072262|ref|XP_008464573.1| (PREDICTED: nucleolar protein 58-like [Cucumis melo])

HSP 1 Score: 79.7 bits (195), Expect = 2.9e-12
Identity = 46/98 (46.94%), Postives = 65/98 (66.33%), Query Frame = 1


Query: 2   KRSIESEQDKQEKQDEDEGQS--------ETYVNEECSSGTKETSETNEESKENRNRKKD 61
           K++ ESE+ +Q +++  +G+         E  V+E+ SS T   SE +E  ++N+ RKK 
Sbjct: 61  KKNTESEEVEQGEEEVKQGEEDNDGKREGEIVVDEDFSSWT---SEQDERLRDNKKRKKI 120

Query: 62  ATKGKKVKSANKEEKAKEDRRRKGKAPMTQEKAEVCVI 92
             KGKKVK+  KE+KAKE +RRKGKA M QEK+EVCVI
Sbjct: 121 TKKGKKVKAVKKEQKAKEYQRRKGKALMKQEKSEVCVI 155

[Close]

BLAST of MELO3C018130 vs. NCBI nr
Match: gi|700210194|gb|KGN65290.1| (hypothetical protein Csa_1G302170 [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 5.0e-12
Identity = 43/73 (58.90%), Postives = 52/73 (71.23%), Query Frame = 1


Query: 2  KRSIESEQDKQEKQDEDE-GQSETYVNEECSSGTKETSETNEESKENRNRKKDATKGKKV 61
          K  IESE+D+Q K+D+DE GQ +T +NEE +S TKETS+ NE S  N   KK   KGKKV
Sbjct: 19 KEDIESEEDEQGKEDKDEEGQGKTTLNEESNSSTKETSDQNEGSMNN---KKSKEKGKKV 78

Query: 62 KSANKEEKAKEDR 74
          K+  KEEK KEDR
Sbjct: 79 KTTKKEEKGKEDR 88

The following BLAST results are available for this feature:

BLAST of MELO3C018130 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTN1_CUCSA	3.5e-12	58.90	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G302170 PE=4 SV=1	[more]

BLAST of MELO3C018130 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659072262\|ref\|XP_008464573.1\|	2.9e-12	46.94	PREDICTED: nucleolar protein 58-like [Cucumis melo]	[more]
gi\|700210194\|gb\|KGN65290.1\|	5.0e-12	58.90	hypothetical protein Csa_1G302170 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C018130T1	MELO3C018130T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C018130	Cucurbita pepo (Zucchini)	cpemeB519
MELO3C018130	Cucurbita pepo (Zucchini)	cpemeB727
MELO3C018130	Bottle gourd (USVL1VR-Ls)	lsimeB312
MELO3C018130	Cucumber (Gy14) v2	cgybmeB175
MELO3C018130	Silver-seed gourd	carmeB0891
MELO3C018130	Silver-seed gourd	carmeB0990
MELO3C018130	Cucumber (Chinese Long) v3	cucmeB207
MELO3C018130	Watermelon (97103) v2	mewmbB339
MELO3C018130	Wax gourd	mewgoB436
MELO3C018130	Cucumber (Gy14) v1	cgymeB448
MELO3C018130	Cucurbita maxima (Rimu)	cmameB033
MELO3C018130	Cucurbita maxima (Rimu)	cmameB428
MELO3C018130	Cucurbita moschata (Rifu)	cmomeB022
MELO3C018130	Cucurbita moschata (Rifu)	cmomeB418
MELO3C018130	Wild cucumber (PI 183967)	cpimeB201
MELO3C018130	Cucumber (Chinese Long) v2	cumeB208
MELO3C018130	Watermelon (Charleston Gray)	mewcgB338
MELO3C018130	Watermelon (97103) v1	mewmB373