MELO3C017026T3 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C017026T3
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Niemann-Pick C1
Location	chr7 : 347594 .. 347951 (+)
Sequence length	150

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGGCTGCTCAAGAATTGAGTTCGAGGCTTTCTGATTCTTTGAAGGTAAAATTTTCAACTACAATTTTAGTTTGATTCTCTTTCTTATCATGTTATTTTGAACTAATAATTTTGCTTTTCACTTGGTTTCAACATTTGATTGAGTTCAGTGACGAACTGCTTTTGAACATTATTTCACCTTAATTCTTTCTTTGAACTACTTGCTTCTGTTGCATTAGCTTAATCTTGAACTTATCCTCCTTGTCATTTGCAGATAGAGATCTTTCCCTACTCTGTATTTTACATGTTTTTTGAGCAATACCTCAATATATGGAGGACAGCGTTGATCAACCTTGCCATTGCTATTGGTCAGTAA

mRNA sequence

ATGAGGGCTGCTCAAGAATTGAGTTCGAGGCTTTCTGATTCTTTGAAGATAGAGATCTTTCCCTACTCTGTATTTTACATGTTTTTTGAGCAATACCTCAATATATGGAGGACAGCGTTGATCAACCTTGCCATTGCTATTGGTCAGTAA

Coding sequence (CDS)

ATGAGGGCTGCTCAAGAATTGAGTTCGAGGCTTTCTGATTCTTTGAAGATAGAGATCTTTCCCTACTCTGTATTTTACATGTTTTTTGAGCAATACCTCAATATATGGAGGACAGCGTTGATCAACCTTGCCATTGCTATTGGTCAGTAA

Protein sequence

MRAAQELSSRLSDSLKIEIFPYSVFYMFFEQYLNIWRTALINLAIAIGQ*

Homology

[Close]

BLAST of MELO3C017026T3 vs. TrEMBL
Match: A0A0A0L4L2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G658620 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 8.7e-18
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1


Query: 1    MRAAQELSSRLSDSLKIEIFPYSVFYMFFEQYLNIWRTALINLAIAIG 49
            MRAAQELSSRLSDSLKIEIFPYSVFYMFFEQYLNIWRTALINLAIAIG
Sbjct: 1082 MRAAQELSSRLSDSLKIEIFPYSVFYMFFEQYLNIWRTALINLAIAIG 1129

[Close]

BLAST of MELO3C017026T3 vs. TrEMBL
Match: A0A072V2S3_MEDTR (Niemann-pick C1-like protein OS=Medicago truncatula GN=MTR_3g115450 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 4.8e-16
Identity = 43/48 (89.58%), Postives = 47/48 (97.92%), Query Frame = 1


Query: 1    MRAAQELSSRLSDSLKIEIFPYSVFYMFFEQYLNIWRTALINLAIAIG 49
            MRAA+E SSR+SDSLKIEIFPYSVFYMFFEQYLNIW+TAL+NLAIAIG
Sbjct: 1082 MRAAREFSSRVSDSLKIEIFPYSVFYMFFEQYLNIWKTALVNLAIAIG 1129

[Close]

BLAST of MELO3C017026T3 vs. TrEMBL
Match: A0A072VDT9_MEDTR (Niemann-pick C1-like protein OS=Medicago truncatula GN=MTR_3g115450 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 4.8e-16
Identity = 43/48 (89.58%), Postives = 47/48 (97.92%), Query Frame = 1


Query: 1    MRAAQELSSRLSDSLKIEIFPYSVFYMFFEQYLNIWRTALINLAIAIG 49
            MRAA+E SSR+SDSLKIEIFPYSVFYMFFEQYLNIW+TAL+NLAIAIG
Sbjct: 1078 MRAAREFSSRVSDSLKIEIFPYSVFYMFFEQYLNIWKTALVNLAIAIG 1125

[Close]

BLAST of MELO3C017026T3 vs. TrEMBL
Match: U5GKA7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s01050g PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 6.2e-16
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 1


Query: 1    MRAAQELSSRLSDSLKIEIFPYSVFYMFFEQYLNIWRTALINLAIAIGQ 50
            MRAA+E SSR SDSLK+EIFPYSVFYMFFEQYL+IWRTALINLAIAIGQ
Sbjct: 1083 MRAAREFSSRASDSLKMEIFPYSVFYMFFEQYLDIWRTALINLAIAIGQ 1131

[Close]

BLAST of MELO3C017026T3 vs. TrEMBL
Match: B9R8N7_RICCO (Hedgehog receptor, putative OS=Ricinus communis GN=RCOM_1601160 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 8.1e-16
Identity = 43/48 (89.58%), Postives = 47/48 (97.92%), Query Frame = 1


Query: 1    MRAAQELSSRLSDSLKIEIFPYSVFYMFFEQYLNIWRTALINLAIAIG 49
            MRAA+E SSR+SDSLK+EIFPYSVFYMFFEQYL+IWRTALINLAIAIG
Sbjct: 1024 MRAAREFSSRMSDSLKLEIFPYSVFYMFFEQYLDIWRTALINLAIAIG 1071

[Close]

BLAST of MELO3C017026T3 vs. TAIR10
Match: AT4G38350.2 (AT4G38350.2 Patched family protein)

HSP 1 Score: 80.9 bits (198), Expect = 2.5e-16
Identity = 38/48 (79.17%), Postives = 42/48 (87.50%), Query Frame = 1


Query: 1    MRAAQELSSRLSDSLKIEIFPYSVFYMFFEQYLNIWRTALINLAIAIG 49
            +RAA+E SSR+S+SLKI+IFPYSVFY+FFEQYLNIW  AL NLAIAIG
Sbjct: 1085 LRAAREFSSRISNSLKIDIFPYSVFYIFFEQYLNIWTVALTNLAIAIG 1132

[Close]

BLAST of MELO3C017026T3 vs. TAIR10
Match: AT1G42470.1 (AT1G42470.1 Patched family protein)

HSP 1 Score: 79.7 bits (195), Expect = 5.6e-16
Identity = 37/47 (78.72%), Postives = 43/47 (91.49%), Query Frame = 1


Query: 1    MRAAQELSSRLSDSLKIEIFPYSVFYMFFEQYLNIWRTALINLAIAI 48
            MRAAQE S+++S SLK+EI+PYSVFYMFFEQYL+IW+TALINL+IAI
Sbjct: 1050 MRAAQEFSAKVSRSLKMEIYPYSVFYMFFEQYLDIWKTALINLSIAI 1096

[Close]

BLAST of MELO3C017026T3 vs. NCBI nr
Match: gi|778697176|ref|XP_011654272.1| (PREDICTED: Niemann-Pick C1 protein isoform X2 [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 1.2e-17
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1


Query: 1    MRAAQELSSRLSDSLKIEIFPYSVFYMFFEQYLNIWRTALINLAIAIG 49
            MRAAQELSSRLSDSLKIEIFPYSVFYMFFEQYLNIWRTALINLAIAIG
Sbjct: 975  MRAAQELSSRLSDSLKIEIFPYSVFYMFFEQYLNIWRTALINLAIAIG 1022

[Close]

BLAST of MELO3C017026T3 vs. NCBI nr
Match: gi|778697173|ref|XP_011654271.1| (PREDICTED: Niemann-Pick C1 protein isoform X1 [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 1.2e-17
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1


Query: 1    MRAAQELSSRLSDSLKIEIFPYSVFYMFFEQYLNIWRTALINLAIAIG 49
            MRAAQELSSRLSDSLKIEIFPYSVFYMFFEQYLNIWRTALINLAIAIG
Sbjct: 1082 MRAAQELSSRLSDSLKIEIFPYSVFYMFFEQYLNIWRTALINLAIAIG 1129

[Close]

BLAST of MELO3C017026T3 vs. NCBI nr
Match: gi|659104696|ref|XP_008452964.1| (PREDICTED: Niemann-Pick C1 protein isoform X1 [Cucumis melo])

HSP 1 Score: 96.7 bits (239), Expect = 1.2e-17
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1


Query: 1    MRAAQELSSRLSDSLKIEIFPYSVFYMFFEQYLNIWRTALINLAIAIG 49
            MRAAQELSSRLSDSLKIEIFPYSVFYMFFEQYLNIWRTALINLAIAIG
Sbjct: 1082 MRAAQELSSRLSDSLKIEIFPYSVFYMFFEQYLNIWRTALINLAIAIG 1129

[Close]

BLAST of MELO3C017026T3 vs. NCBI nr
Match: gi|659104698|ref|XP_008452965.1| (PREDICTED: Niemann-Pick C1 protein isoform X2 [Cucumis melo])

HSP 1 Score: 96.7 bits (239), Expect = 1.2e-17
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1


Query: 1    MRAAQELSSRLSDSLKIEIFPYSVFYMFFEQYLNIWRTALINLAIAIG 49
            MRAAQELSSRLSDSLKIEIFPYSVFYMFFEQYLNIWRTALINLAIAIG
Sbjct: 975  MRAAQELSSRLSDSLKIEIFPYSVFYMFFEQYLNIWRTALINLAIAIG 1022

[Close]

BLAST of MELO3C017026T3 vs. NCBI nr
Match: gi|645265085|ref|XP_008237984.1| (PREDICTED: Niemann-Pick C1 protein-like [Prunus mume])

HSP 1 Score: 92.0 bits (227), Expect = 3.1e-16
Identity = 45/48 (93.75%), Postives = 48/48 (100.00%), Query Frame = 1


Query: 1    MRAAQELSSRLSDSLKIEIFPYSVFYMFFEQYLNIWRTALINLAIAIG 49
            MRAA+ELSSRLSDSLKIEIFPYSVFYMFFEQYL+IWRTALINL+IAIG
Sbjct: 1077 MRAARELSSRLSDSLKIEIFPYSVFYMFFEQYLDIWRTALINLSIAIG 1124

The following BLAST results are available for this feature:

BLAST of MELO3C017026T3 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4L2_CUCSA	8.7e-18	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G658620 PE=4 SV=1	[more]
A0A072V2S3_MEDTR	4.8e-16	89.58	Niemann-pick C1-like protein OS=Medicago truncatula GN=MTR_3g115450 PE=4 SV=1	[more]
A0A072VDT9_MEDTR	4.8e-16	89.58	Niemann-pick C1-like protein OS=Medicago truncatula GN=MTR_3g115450 PE=4 SV=1	[more]
U5GKA7_POPTR	6.2e-16	89.80	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s01050g PE=4 SV=1	[more]
B9R8N7_RICCO	8.1e-16	89.58	Hedgehog receptor, putative OS=Ricinus communis GN=RCOM_1601160 PE=4 SV=1	[more]

BLAST of MELO3C017026T3 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G38350.2	2.5e-16	79.17	Patched family protein	[more]
AT1G42470.1	5.6e-16	78.72	Patched family protein	[more]

BLAST of MELO3C017026T3 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778697176\|ref\|XP_011654272.1\|	1.2e-17	100.00	PREDICTED: Niemann-Pick C1 protein isoform X2 [Cucumis sativus]	[more]
gi\|778697173\|ref\|XP_011654271.1\|	1.2e-17	100.00	PREDICTED: Niemann-Pick C1 protein isoform X1 [Cucumis sativus]	[more]
gi\|659104696\|ref\|XP_008452964.1\|	1.2e-17	100.00	PREDICTED: Niemann-Pick C1 protein isoform X1 [Cucumis melo]	[more]
gi\|659104698\|ref\|XP_008452965.1\|	1.2e-17	100.00	PREDICTED: Niemann-Pick C1 protein isoform X2 [Cucumis melo]	[more]
gi\|645265085\|ref\|XP_008237984.1\|	3.1e-16	93.75	PREDICTED: Niemann-Pick C1 protein-like [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030301	cholesterol transport
biological_process	GO:0007165	signal transduction
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0009506	plasmodesma
molecular_function	GO:0008158	hedgehog receptor activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C017026	MELO3C017026	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C017026T3	MELO3C017026T3-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C017026T3.cds1	MELO3C017026T3.cds1	CDS
MELO3C017026T3.cds2	MELO3C017026T3.cds2	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR10796	PATCHED-RELATED	coord: 1..48 score: 2.0
None	No IPR available	PANTHER	PTHR10796:SF117	PATCHED FAMILY PROTEIN	coord: 1..48 score: 2.0