MELO3C017026T2 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C017026T2
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Niemann-Pick C1
Location	chr7 : 348513 .. 350018 (+)
Sequence length	396

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAATTTTGAATATCCAATTGAACGCAATCTCTGTCGTCAATCTTGTCATGTCTGTGGGAATTGCTGTTGAATTTTGTGTGCATTTGACACATGCTTTCTCGGTCAGTACATGATTTCATTTTTCACTAATGCACTCCACTTAAAAGTCAACCGTAGTCATAATCTTTTCATAGGGGGTTTACTTTATGTAATAAAATCCACAACTTAACAATTAATATCATACAGAAATTAGTCGGATTATACAATGTCGCATGATTAATCAGAATGGGCGTTTCAATTAACAGACTGCCTGTCAACGCTTAACATCTTTGGCTAAACTAGTGACTAGAGGCATAATTATCATACCGTTGCCACAAAGGACGGCCTATAATTTTGGGAACTTTTCTCTTCAGAATTGATTATACACTGCTCTCACTAGTCATGCGTTTTCTTATTTATTTATTTTCTCTCACAGGTAAGCAGCGGAGATAGAAATCAACGGATGAAGGAGGCTCTTAGTACAATGGGAGCATCTGTTCTTAGGTACCATTTGCGATGTGTTGTAGTGGAGCTCTGTTTAGATATGCAATCCTGGAAATTTAACCTTGTGTCGTTATTATCATTCTTTATCCAATTTATTTGCCAGTTTTCATTTACTTTATACTGATGCTTGCAGTGGAATCACACTAACAAAGCTAGTCGGGGTCCTTGTACTTTGCTTCTCTAGGACAGAAGTTTTTGTGGTATTAATTTCATCAACCCCCAAATTTAAATTTTAAGTAATCTATTTGCGAGGTCCATTTATATCTTCAATCTATGTTCTGCAGGTCTATTATTTCCATGTGTACTTGGCATTAGTACTTCTTGGATTTTTGCACGGCCTCGTATTCTTGCCGGTAAGTATAGACATGTTTCTTCTGTACAAGAGGTTGTTAGGTGCAAGTTTTGTCTTTTTCACCATGGAGCATACTTATAAAAAGGGAAAAAACTATAATGATTCCCGATAAAAAGGGAAAATGTCCTGGGAAAATGTCCTTGTGTCTCATAGTAGTATTTGTGGGTTGGGTCAGAAAGGGTTGAAATACCTTTTTGACCAAACATGGTTATTTGGGTTATAAAAAATTTCAACCAAAACACTTAACATGTTAAGTAATGAACCCAAGCAGCCAACCAAGAAATTTTTGGGTTTGGTTGGATTGAGTTGGTTCGGGTTATTTGCATGAGTTATACGACAACATTTGCACATGAAAATTTGATATTTCTAATCAAGTTTTTACACCATTCTGGATATTTTTCCTTCTTTGATCTTATGATATTTTCTTATTGTACCTTTGGTGAACTGTGACGGATGGTCATACCAAATTCTTTGTATTCTGCAATGCAATCATCCAATCAAATTTGACATGTATTTATGAAAACATCATGGATCGCTGCAGGTAGTGTTGAGCTTGTTCGGTCCACCTTCAAGATGTGTATTCGTCGAGCAACAGGACAATCGGCCCTCTACTTCGTCTCGGTCATAA

mRNA sequence

ATGGCAATTTTGAATATCCAATTGAACGCAATCTCTGTCGTCAATCTTGTCATGTCTGTGGGAATTGCTGTTGAATTTTGTGTGCATTTGACACATGCTTTCTCGGTAAGCAGCGGAGATAGAAATCAACGGATGAAGGAGGCTCTTAGTACAATGGGAGCATCTGTTCTTAGTGGAATCACACTAACAAAGCTAGTCGGGGTCCTTGTACTTTGCTTCTCTAGGACAGAAGTTTTTGTGGTCTATTATTTCCATGTGTACTTGGCATTAGTACTTCTTGGATTTTTGCACGGCCTCGTATTCTTGCCGGTAGTGTTGAGCTTGTTCGGTCCACCTTCAAGATGTGTATTCGTCGAGCAACAGGACAATCGGCCCTCTACTTCGTCTCGGTCATAA

Coding sequence (CDS)

ATGGCAATTTTGAATATCCAATTGAACGCAATCTCTGTCGTCAATCTTGTCATGTCTGTGGGAATTGCTGTTGAATTTTGTGTGCATTTGACACATGCTTTCTCGGTAAGCAGCGGAGATAGAAATCAACGGATGAAGGAGGCTCTTAGTACAATGGGAGCATCTGTTCTTAGTGGAATCACACTAACAAAGCTAGTCGGGGTCCTTGTACTTTGCTTCTCTAGGACAGAAGTTTTTGTGGTCTATTATTTCCATGTGTACTTGGCATTAGTACTTCTTGGATTTTTGCACGGCCTCGTATTCTTGCCGGTAGTGTTGAGCTTGTTCGGTCCACCTTCAAGATGTGTATTCGTCGAGCAACAGGACAATCGGCCCTCTACTTCGTCTCGGTCATAA

Protein sequence

MAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGITLTKLVGVLVLCFSRTEVFVVYYFHVYLALVLLGFLHGLVFLPVVLSLFGPPSRCVFVEQQDNRPSTSSRS*

Homology

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BLAST of MELO3C017026T2 vs. Swiss-Prot
Match: NPC1_HUMAN (Niemann-Pick C1 protein OS=Homo sapiens GN=NPC1 PE=1 SV=2)

HSP 1 Score: 134.8 bits (338), Expect = 6.8e-31
Identity = 66/112 (58.93%), Postives = 87/112 (77.68%), Query Frame = 1


Query: 1    MAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVS-SGDRNQRMKEALSTMGASVLSG 60
            M +  I LNA+S+VNLVMS GI+VEFC H+T AF+VS  G R +R +EAL+ MG+SV SG
Sbjct: 1142 MWLWGISLNAVSLVNLVMSCGISVEFCSHITRAFTVSMKGSRVERAEEALAHMGSSVFSG 1201

Query: 61   ITLTKLVGVLVLCFSRTEVFVVYYFHVYLALVLLGFLHGLVFLPVVLSLFGP 112
            ITLTK  G++VL F+++++F ++YF +YLA+VLLG  HGL+FLPV+LS  GP
Sbjct: 1202 ITLTKFGGIVVLAFAKSQIFQIFYFRMYLAMVLLGATHGLIFLPVLLSYIGP 1253

[Close]

BLAST of MELO3C017026T2 vs. Swiss-Prot
Match: NPC1_MOUSE (Niemann-Pick C1 protein OS=Mus musculus GN=Npc1 PE=1 SV=2)

HSP 1 Score: 133.3 bits (334), Expect = 2.0e-30
Identity = 65/112 (58.04%), Postives = 87/112 (77.68%), Query Frame = 1


Query: 1    MAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSS-GDRNQRMKEALSTMGASVLSG 60
            M +  I LNA+S+VNLVMS GI+VEFC H+T AF++S+ G R  R +EAL+ MG+SV SG
Sbjct: 1141 MWLWGISLNAVSLVNLVMSCGISVEFCSHITRAFTMSTKGSRVSRAEEALAHMGSSVFSG 1200

Query: 61   ITLTKLVGVLVLCFSRTEVFVVYYFHVYLALVLLGFLHGLVFLPVVLSLFGP 112
            ITLTK  G++VL F+++++F ++YF +YLA+VLLG  HGL+FLPV+LS  GP
Sbjct: 1201 ITLTKFGGIVVLAFAKSQIFEIFYFRMYLAMVLLGATHGLIFLPVLLSYIGP 1252

[Close]

BLAST of MELO3C017026T2 vs. Swiss-Prot
Match: NPC1_PIG (Niemann-Pick C1 protein OS=Sus scrofa GN=NPC1 PE=2 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.0e-30
Identity = 65/112 (58.04%), Postives = 87/112 (77.68%), Query Frame = 1


Query: 1    MAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSS-GDRNQRMKEALSTMGASVLSG 60
            M +  I LNA+S+VNLVMS GI+VEFC H+T AF++S+ G R  R +EAL+ MG+SV SG
Sbjct: 1141 MWLWGISLNAVSLVNLVMSCGISVEFCSHITRAFTLSTKGSRVDRAEEALAHMGSSVFSG 1200

Query: 61   ITLTKLVGVLVLCFSRTEVFVVYYFHVYLALVLLGFLHGLVFLPVVLSLFGP 112
            ITLTK  G++VL F+++++F ++YF +YLA+VLLG  HGL+FLPV+LS  GP
Sbjct: 1201 ITLTKFGGIVVLAFAKSQIFQIFYFRMYLAIVLLGATHGLIFLPVLLSYIGP 1252

[Close]

BLAST of MELO3C017026T2 vs. Swiss-Prot
Match: NPC1_YEAST (Niemann-Pick type C-related protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NCR1 PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.7e-26
Identity = 57/117 (48.72%), Postives = 84/117 (71.79%), Query Frame = 1


Query: 1    MAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSV----SSGDRNQRMKEALSTMGASV 60
            MA+L I LNA+S+VNL++ VG+ VEFCVH+  +F+V    +  D N R+  +L+T+G SV
Sbjct: 1044 MALLGISLNAVSLVNLIICVGLGVEFCVHIVRSFTVVPSETKKDANSRVLYSLNTIGESV 1103

Query: 61   LSGITLTKLVGVLVLCFSRTEVFVVYYFHVYLALVLLGFLHGLVFLPVVLSLFGPPS 114
            + GITLTK +GV VL F+++++F V+YF ++  L+++  LH L+FLP +LSLFG  S
Sbjct: 1104 IKGITLTKFIGVCVLAFAQSKIFDVFYFRMWFTLIIVAALHALLFLPALLSLFGGES 1160

[Close]

BLAST of MELO3C017026T2 vs. Swiss-Prot
Match: NPCL1_RAT (Niemann-Pick C1-like protein 1 OS=Rattus norvegicus GN=Npc1l1 PE=1 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 6.9e-23
Identity = 52/122 (42.62%), Postives = 82/122 (67.21%), Query Frame = 1


Query: 1    MAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGD-RNQRMKEALSTMGASVLSG 60
            MA+  I  NA+S++NLV +VG++VEF  H+T +F+VS+   R +R K+A   MG++V +G
Sbjct: 1157 MAVWGISYNAVSLINLVTAVGMSVEFVSHITRSFAVSTKPTRLERAKDATVFMGSAVFAG 1216

Query: 61   ITLTKLVGVLVLCFSRTEVFVVYYFHVYLALVLLGFLHGLVFLPVVLSLFGPPSRCVFVE 120
            + +T   G+L+L F++ ++  +++F + L + LLG LHGLVFLPVVLS  GP      V+
Sbjct: 1217 VAMTNFPGILILGFAQAQLIQIFFFRLNLLITLLGLLHGLVFLPVVLSYLGPDVNQALVQ 1276

Query: 121  QQ 122
            ++
Sbjct: 1277 EE 1278

[Close]

BLAST of MELO3C017026T2 vs. TrEMBL
Match: A0A0A0L4L2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G658620 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 1.5e-64
Identity = 130/131 (99.24%), Postives = 131/131 (100.00%), Query Frame = 1


Query: 1    MAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGI 60
            MAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGI
Sbjct: 1163 MAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGI 1222

Query: 61   TLTKLVGVLVLCFSRTEVFVVYYFHVYLALVLLGFLHGLVFLPVVLSLFGPPSRCVFVEQ 120
            TLTKLVGVLVLCFSRTEVFVVYYFHVYLALVLLGFLHGLVFLPVVLSLFGPPSRCVFVEQ
Sbjct: 1223 TLTKLVGVLVLCFSRTEVFVVYYFHVYLALVLLGFLHGLVFLPVVLSLFGPPSRCVFVEQ 1282

Query: 121  QDNRPSTSSRS 132
            QDNRPSTSS+S
Sbjct: 1283 QDNRPSTSSQS 1293

[Close]

BLAST of MELO3C017026T2 vs. TrEMBL
Match: A0A068UFF5_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00024510001 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 7.8e-58
Identity = 115/130 (88.46%), Postives = 126/130 (96.92%), Query Frame = 1


Query: 1    MAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGI 60
            MAILNIQLNA+SVVNLVMSVGIAVEFCVH+THAF VSSGDRNQRMK+AL+TMGASV SGI
Sbjct: 1165 MAILNIQLNAVSVVNLVMSVGIAVEFCVHITHAFLVSSGDRNQRMKDALTTMGASVFSGI 1224

Query: 61   TLTKLVGVLVLCFSRTEVFVVYYFHVYLALVLLGFLHGLVFLPVVLSLFGPPSRCVFVEQ 120
            TLTKLVGVLVLCFSRTEVFVVYYF +YLALVLLGFLHGLVFLPV+LSLFGPPSRCV +E+
Sbjct: 1225 TLTKLVGVLVLCFSRTEVFVVYYFKMYLALVLLGFLHGLVFLPVLLSLFGPPSRCVLIEK 1284

Query: 121  QDNRPSTSSR 131
            Q++RPSTSS+
Sbjct: 1285 QEDRPSTSSQ 1294

[Close]

BLAST of MELO3C017026T2 vs. TrEMBL
Match: M1AM77_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400009984 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 1.7e-57
Identity = 113/130 (86.92%), Postives = 126/130 (96.92%), Query Frame = 1


Query: 1   MAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGI 60
           MAILNIQLNA+SVVNLVM+VGIAVEFCVH+THAF VSSGDRNQRMKEAL+TMGASV SGI
Sbjct: 203 MAILNIQLNAVSVVNLVMAVGIAVEFCVHITHAFLVSSGDRNQRMKEALTTMGASVFSGI 262

Query: 61  TLTKLVGVLVLCFSRTEVFVVYYFHVYLALVLLGFLHGLVFLPVVLSLFGPPSRCVFVEQ 120
           TLTKLVGV+VLCFSRTEVFVVYYF +YLALVLLGFLHGL+FLPV+LS+FGPPSRCV VE+
Sbjct: 263 TLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLIFLPVLLSIFGPPSRCVLVEK 322

Query: 121 QDNRPSTSSR 131
           Q++RPSTSS+
Sbjct: 323 QEDRPSTSSQ 332

[Close]

BLAST of MELO3C017026T2 vs. TrEMBL
Match: M1AM78_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400009984 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 1.7e-57
Identity = 113/130 (86.92%), Postives = 126/130 (96.92%), Query Frame = 1


Query: 1   MAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGI 60
           MAILNIQLNA+SVVNLVM+VGIAVEFCVH+THAF VSSGDRNQRMKEAL+TMGASV SGI
Sbjct: 454 MAILNIQLNAVSVVNLVMAVGIAVEFCVHITHAFLVSSGDRNQRMKEALTTMGASVFSGI 513

Query: 61  TLTKLVGVLVLCFSRTEVFVVYYFHVYLALVLLGFLHGLVFLPVVLSLFGPPSRCVFVEQ 120
           TLTKLVGV+VLCFSRTEVFVVYYF +YLALVLLGFLHGL+FLPV+LS+FGPPSRCV VE+
Sbjct: 514 TLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLIFLPVLLSIFGPPSRCVLVEK 573

Query: 121 QDNRPSTSSR 131
           Q++RPSTSS+
Sbjct: 574 QEDRPSTSSQ 583

[Close]

BLAST of MELO3C017026T2 vs. TrEMBL
Match: M1AM79_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400009984 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 1.7e-57
Identity = 113/130 (86.92%), Postives = 126/130 (96.92%), Query Frame = 1


Query: 1   MAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGI 60
           MAILNIQLNA+SVVNLVM+VGIAVEFCVH+THAF VSSGDRNQRMKEAL+TMGASV SGI
Sbjct: 1   MAILNIQLNAVSVVNLVMAVGIAVEFCVHITHAFLVSSGDRNQRMKEALTTMGASVFSGI 60

Query: 61  TLTKLVGVLVLCFSRTEVFVVYYFHVYLALVLLGFLHGLVFLPVVLSLFGPPSRCVFVEQ 120
           TLTKLVGV+VLCFSRTEVFVVYYF +YLALVLLGFLHGL+FLPV+LS+FGPPSRCV VE+
Sbjct: 61  TLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLIFLPVLLSIFGPPSRCVLVEK 120

Query: 121 QDNRPSTSSR 131
           Q++RPSTSS+
Sbjct: 121 QEDRPSTSSQ 130

[Close]

BLAST of MELO3C017026T2 vs. TAIR10
Match: AT4G38350.2 (AT4G38350.2 Patched family protein)

HSP 1 Score: 189.9 bits (481), Expect = 1.0e-48
Identity = 92/129 (71.32%), Postives = 109/129 (84.50%), Query Frame = 1


Query: 1    MAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGI 60
            M IL IQLNA+SVVNL+MS+GIAVEFCVH++HAF +SSGDR  R +EAL TMGASV SGI
Sbjct: 1166 MVILGIQLNAVSVVNLIMSIGIAVEFCVHISHAFLMSSGDREHRAREALETMGASVFSGI 1225

Query: 61   TLTKLVGVLVLCFSRTEVFVVYYFHVYLALVLLGFLHGLVFLPVVLSLFGPPSRCVFVEQ 120
            TLTKLVGV+VLCF+R+E+FVVYYF +YLALV++GFLHGLVFLPV+LSL GPP   + +EQ
Sbjct: 1226 TLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLAGPPQLNLDIEQ 1285

Query: 121  QDNRPSTSS 130
            Q    ++SS
Sbjct: 1286 QQTDEASSS 1294

[Close]

BLAST of MELO3C017026T2 vs. TAIR10
Match: AT1G42470.1 (AT1G42470.1 Patched family protein)

HSP 1 Score: 64.3 bits (155), Expect = 6.4e-11
Identity = 29/35 (82.86%), Postives = 32/35 (91.43%), Query Frame = 1


Query: 1    MAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFS 36
            MA+ +IQLNA+SVVNL+MSVGIAVEFCVH+THAFS
Sbjct: 1131 MAVFHIQLNALSVVNLIMSVGIAVEFCVHITHAFS 1165

[Close]

BLAST of MELO3C017026T2 vs. NCBI nr
Match: gi|659104696|ref|XP_008452964.1| (PREDICTED: Niemann-Pick C1 protein isoform X1 [Cucumis melo])

HSP 1 Score: 255.0 bits (650), Expect = 7.2e-65
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 1


Query: 1    MAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGI 60
            MAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGI
Sbjct: 1163 MAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGI 1222

Query: 61   TLTKLVGVLVLCFSRTEVFVVYYFHVYLALVLLGFLHGLVFLPVVLSLFGPPSRCVFVEQ 120
            TLTKLVGVLVLCFSRTEVFVVYYFHVYLALVLLGFLHGLVFLPVVLSLFGPPSRCVFVEQ
Sbjct: 1223 TLTKLVGVLVLCFSRTEVFVVYYFHVYLALVLLGFLHGLVFLPVVLSLFGPPSRCVFVEQ 1282

Query: 121  QDNRPSTSSRS 132
            QDNRPSTSSRS
Sbjct: 1283 QDNRPSTSSRS 1293

[Close]

BLAST of MELO3C017026T2 vs. NCBI nr
Match: gi|659104698|ref|XP_008452965.1| (PREDICTED: Niemann-Pick C1 protein isoform X2 [Cucumis melo])

HSP 1 Score: 255.0 bits (650), Expect = 7.2e-65
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 1


Query: 1    MAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGI 60
            MAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGI
Sbjct: 1056 MAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGI 1115

Query: 61   TLTKLVGVLVLCFSRTEVFVVYYFHVYLALVLLGFLHGLVFLPVVLSLFGPPSRCVFVEQ 120
            TLTKLVGVLVLCFSRTEVFVVYYFHVYLALVLLGFLHGLVFLPVVLSLFGPPSRCVFVEQ
Sbjct: 1116 TLTKLVGVLVLCFSRTEVFVVYYFHVYLALVLLGFLHGLVFLPVVLSLFGPPSRCVFVEQ 1175

Query: 121  QDNRPSTSSRS 132
            QDNRPSTSSRS
Sbjct: 1176 QDNRPSTSSRS 1186

[Close]

BLAST of MELO3C017026T2 vs. NCBI nr
Match: gi|778697176|ref|XP_011654272.1| (PREDICTED: Niemann-Pick C1 protein isoform X2 [Cucumis sativus])

HSP 1 Score: 253.4 bits (646), Expect = 2.1e-64
Identity = 130/131 (99.24%), Postives = 131/131 (100.00%), Query Frame = 1


Query: 1    MAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGI 60
            MAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGI
Sbjct: 1056 MAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGI 1115

Query: 61   TLTKLVGVLVLCFSRTEVFVVYYFHVYLALVLLGFLHGLVFLPVVLSLFGPPSRCVFVEQ 120
            TLTKLVGVLVLCFSRTEVFVVYYFHVYLALVLLGFLHGLVFLPVVLSLFGPPSRCVFVEQ
Sbjct: 1116 TLTKLVGVLVLCFSRTEVFVVYYFHVYLALVLLGFLHGLVFLPVVLSLFGPPSRCVFVEQ 1175

Query: 121  QDNRPSTSSRS 132
            QDNRPSTSS+S
Sbjct: 1176 QDNRPSTSSQS 1186

[Close]

BLAST of MELO3C017026T2 vs. NCBI nr
Match: gi|778697173|ref|XP_011654271.1| (PREDICTED: Niemann-Pick C1 protein isoform X1 [Cucumis sativus])

HSP 1 Score: 253.4 bits (646), Expect = 2.1e-64
Identity = 130/131 (99.24%), Postives = 131/131 (100.00%), Query Frame = 1


Query: 1    MAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGI 60
            MAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGI
Sbjct: 1163 MAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGI 1222

Query: 61   TLTKLVGVLVLCFSRTEVFVVYYFHVYLALVLLGFLHGLVFLPVVLSLFGPPSRCVFVEQ 120
            TLTKLVGVLVLCFSRTEVFVVYYFHVYLALVLLGFLHGLVFLPVVLSLFGPPSRCVFVEQ
Sbjct: 1223 TLTKLVGVLVLCFSRTEVFVVYYFHVYLALVLLGFLHGLVFLPVVLSLFGPPSRCVFVEQ 1282

Query: 121  QDNRPSTSSRS 132
            QDNRPSTSS+S
Sbjct: 1283 QDNRPSTSSQS 1293

[Close]

BLAST of MELO3C017026T2 vs. NCBI nr
Match: gi|747046607|ref|XP_011100496.1| (PREDICTED: LOW QUALITY PROTEIN: Niemann-Pick C1 protein-like [Sesamum indicum])

HSP 1 Score: 232.3 bits (591), Expect = 5.0e-58
Identity = 115/130 (88.46%), Postives = 126/130 (96.92%), Query Frame = 1


Query: 1    MAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGI 60
            MAILNIQLNA+SVVNLVMSVGIAVEFCVH+THAF VSSGDRNQRMKEAL+TMGASV SGI
Sbjct: 1195 MAILNIQLNALSVVNLVMSVGIAVEFCVHITHAFLVSSGDRNQRMKEALTTMGASVFSGI 1254

Query: 61   TLTKLVGVLVLCFSRTEVFVVYYFHVYLALVLLGFLHGLVFLPVVLSLFGPPSRCVFVEQ 120
            TLTKLVGVLVLCFSRTEVFVVYYF +YL+LVLLGFLHGLVFLPV+LS+FGPPSRCV +E+
Sbjct: 1255 TLTKLVGVLVLCFSRTEVFVVYYFKMYLSLVLLGFLHGLVFLPVILSMFGPPSRCVLIEK 1314

Query: 121  QDNRPSTSSR 131
            QD+RPSTSS+
Sbjct: 1315 QDDRPSTSSQ 1324

The following BLAST results are available for this feature:

BLAST of MELO3C017026T2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NPC1_HUMAN	6.8e-31	58.93	Niemann-Pick C1 protein OS=Homo sapiens GN=NPC1 PE=1 SV=2	[more]
NPC1_MOUSE	2.0e-30	58.04	Niemann-Pick C1 protein OS=Mus musculus GN=Npc1 PE=1 SV=2	[more]
NPC1_PIG	2.0e-30	58.04	Niemann-Pick C1 protein OS=Sus scrofa GN=NPC1 PE=2 SV=1	[more]
NPC1_YEAST	1.7e-26	48.72	Niemann-Pick type C-related protein 1 OS=Saccharomyces cerevisiae (strain ATCC 2...	[more]
NPCL1_RAT	6.9e-23	42.62	Niemann-Pick C1-like protein 1 OS=Rattus norvegicus GN=Npc1l1 PE=1 SV=1	[more]

BLAST of MELO3C017026T2 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4L2_CUCSA	1.5e-64	99.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G658620 PE=4 SV=1	[more]
A0A068UFF5_COFCA	7.8e-58	88.46	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00024510001 PE=4 SV=1	[more]
M1AM77_SOLTU	1.7e-57	86.92	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400009984 PE=4 SV=1	[more]
M1AM78_SOLTU	1.7e-57	86.92	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400009984 PE=4 SV=1	[more]
M1AM79_SOLTU	1.7e-57	86.92	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400009984 PE=4 SV=1	[more]

BLAST of MELO3C017026T2 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G38350.2	1.0e-48	71.32	Patched family protein	[more]
AT1G42470.1	6.4e-11	82.86	Patched family protein	[more]

BLAST of MELO3C017026T2 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659104696\|ref\|XP_008452964.1\|	7.2e-65	100.00	PREDICTED: Niemann-Pick C1 protein isoform X1 [Cucumis melo]	[more]
gi\|659104698\|ref\|XP_008452965.1\|	7.2e-65	100.00	PREDICTED: Niemann-Pick C1 protein isoform X2 [Cucumis melo]	[more]
gi\|778697176\|ref\|XP_011654272.1\|	2.1e-64	99.24	PREDICTED: Niemann-Pick C1 protein isoform X2 [Cucumis sativus]	[more]
gi\|778697173\|ref\|XP_011654271.1\|	2.1e-64	99.24	PREDICTED: Niemann-Pick C1 protein isoform X1 [Cucumis sativus]	[more]
gi\|747046607\|ref\|XP_011100496.1\|	5.0e-58	88.46	PREDICTED: LOW QUALITY PROTEIN: Niemann-Pick C1 protein-like [Sesamum indicum]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR003392	Ptc/Disp

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030301	cholesterol transport
biological_process	GO:0007165	signal transduction
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0009506	plasmodesma
molecular_function	GO:0008158	hedgehog receptor activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C017026	MELO3C017026	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C017026T2	MELO3C017026T2-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C017026T2.cds1	MELO3C017026T2.cds1	CDS
MELO3C017026T2.cds2	MELO3C017026T2.cds2	CDS
MELO3C017026T2.cds3	MELO3C017026T2.cds3	CDS
MELO3C017026T2.cds4	MELO3C017026T2.cds4	CDS
MELO3C017026T2.cds5	MELO3C017026T2.cds5	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003392	Protein patched/dispatched	PFAM	PF02460	Patched	coord: 4..109 score: 2.9
None	No IPR available	GENE3D	G3DSA:1.20.1640.10		coord: 1..112 score: 1.4
None	No IPR available	PANTHER	PTHR10796	PATCHED-RELATED	coord: 1..130 score: 2.7
None	No IPR available	PANTHER	PTHR10796:SF117	PATCHED FAMILY PROTEIN	coord: 1..130 score: 2.7
None	No IPR available	unknown	SSF82866	Multidrug efflux transporter AcrB transmembrane domain	coord: 1..110 score: 1.44