MELO3C017026T1 (mRNA) Melon (DHL92) v3.5.1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATTTTTTATTCACTAGACTATGAAAACGGTGTTATTCAAGCATCTTCTTTCAGAACATACCATACGCCCCTGAATAAGCAGGTGTGGTGTGGTCAGTTTCTAATTGTGATTTAGATAGTTGTATCTAAAGAATATAATTTCTTTTTTTTTTTAATTTTTTCTTTTTTAAATATAAAAAAATTATCAGGTTGACTATATTAATTCGATGAGGGCTGCTCAAGAATTGAGTTCGAGGCTTTCTGATTCTTTGAAGGTAAAATTTTCAACTACAATTTTAGTTTGATTCTCTTTCTTATCATGTTATTTTGAACTAATAATTTTGCTTTTCACTTGGTTTCAACATTTGATTGAGTTCAGTGACGAACTGCTTTTGAACATTATTTCACCTTAATTCTTTCTTTGAACTACTTGCTTCTGTTGCATTAGCTTAATCTTGAACTTATCCTCCTTGTCATTTGCAGATAGAGATCTTTCCCTACTCTGTATTTTACATGTTTTTTGAGCAATACCTCAATATATGGAGGACAGCGTTGATCAACCTTGCCATTGCTATTGGTCAGTAAATAAGGACATTTGTGCGTGCGTTGTTTAATAAATAGTGTAGAAGGCTACCTTGCACTTCCTGTAATACAAATTTGTCCTCCGCGATGATGATATCAAATGCTTTGTGCTTATTTTTCTTTCACTTATTTTTATTTGAAGACCTTTTAAGGAAAATTATCATCCCCAATATAGTTATAAAAGATTTCTTGGTGATACTGAAAAGTTGAAAAGCATTGATTTTATATTCTTTTACTGCTTTCCAGGTGCGGTTTTTATTGTATGCCTGATCATTACATGCAGGTTAGTGATGGTGTTACTGGCATTCAAGTAGACAGATATTTTTCTCTTCTTCAAATGTGCTAACTAAGCTTCCTCGTGCTTGATTTCTTTGTTGTAGCTTATGGACCTCGGCTATCATCTTGTTGGTGTTGGCAATGATTATTGTGGATCTTATGGTATTTTCTTTATACCTAATTATCTCCGGAATGCTATATTAGAAGTTAGTTTAATTATTTTAATATCTATCAGATGTTTATATAAATCTTACCCTTTGCTGACAAGATAATACTTCGCAGGGCGTGATGGCAATTTTGAATATCCAATTGAACGCAATCTCTGTCGTCAATCTTGTCATGTCTGTGGGAATTGCTGTTGAATTTTGTGTGCATTTGACACATGCTTTCTCGGTCAGTACATGATTTCATTTTTCACTAATGCACTCCACTTAAAAGTCAACCGTAGTCATAATCTTTTCATAGGGGGTTTACTTTATGTAATAAAATCCACAACTTAACAATTAATATCATACAGAAATTAGTCGGATTATACAATGTCGCATGATTAATCAGAATGGGCGTTTCAATTAACAGACTGCCTGTCAACGCTTAACATCTTTGGCTAAACTAGTGACTAGAGGCATAATTATCATACCGTTGCCACAAAGGACGGCCTATAATTTTGGGAACTTTTCTCTTCAGAATTGATTATACACTGCTCTCACTAGTCATGCGTTTTCTTATTTATTTATTTTCTCTCACAGGTAAGCAGCGGAGATAGAAATCAACGGATGAAGGAGGCTCTTAGTACAATGGGAGCATCTGTTCTTAGGTACCATTTGCGATGTGTTGTAGTGGAGCTCTGTTTAGATATGCAATCCTGGAAATTTAACCTTGTGTCGTTATTATCATTCTTTATCCAATTTATTTGCCAGTTTTCATTTACTTTATACTGATGCTTGCAGTGGAATCACACTAACAAAGCTAGTCGGGGTCCTTGTACTTTGCTTCTCTAGGACAGAAGTTTTTGTGGTATTAATTTCATCAACCCCCAAATTTAAATTTTAAGTAATCTATTTGCGAGGTCCATTTATATCTTCAATCTATGTTCTGCAGGTCTATTATTTCCATGTGTACTTGGCATTAGTACTTCTTGGATTTTTGCACGGCCTCGTATTCTTGCCGGTAAGTATAGACATGTTTCTTCTGTACAAGAGGTTGTTAGGTGCAAGTTTTGTCTTTTTCACCATGGAGCATACTTATAAAAAGGGAAAAAACTATAATGATTCCCGATAAAAAGGGAAAATGTCCTGGGAAAATGTCCTTGTGTCTCATAGTAGTATTTGTGGGTTGGGTCAGAAAGGGTTGAAATACCTTTTTGACCAAACATGGTTATTTGGGTTATAAAAAATTTCAACCAAAACACTTAACATGTTAAGTAATGAACCCAAGCAGCCAACCAAGAAATTTTTGGGTTTGGTTGGATTGAGTTGGTTCGGGTTATTTGCATGAGTTATACGACAACATTTGCACATGAAAATTTGATATTTCTAATCAAGTTTTTACACCATTCTGGATATTTTTCCTTCTTTGATCTTATGATATTTTCTTATTGTACCTTTGGTGAACTGTGACGGATGGTCATACCAAATTCTTTGTATTCTGCAATGCAATCATCCAATCAAATTTGACATGTATTTATGAAAACATCATGGATCGCTGCAGGTAGTGTTGAGCTTGTTCGGTCCACCTTCAAGATGTGTATTCGTCGAGCAACAGGACAATCGGCCCTCTACTTCGTCTCGGTCATAAAGAGTTATAATTGAATTTGCATCACAGATGAACAGCCAAAGAGGGTTCCGTAGGCCTTTGAAGGTTTGGCGCACTCATTCATTGGCACACATGCTTAAACGCCAATAAAGAAAGGAAGAAAGAATATATATATATATATACACACACACACATATATATATATATA ATTTTTTATTCACTAGACTATGAAAACGGTGTTATTCAAGCATCTTCTTTCAGAACATACCATACGCCCCTGAATAAGCAGGTTGACTATATTAATTCGATGAGGGCTGCTCAAGAATTGAGTTCGAGGCTTTCTGATTCTTTGAAGATAGAGATCTTTCCCTACTCTGTATTTTACATGTTTTTTGAGCAATACCTCAATATATGGAGGACAGCGTTGATCAACCTTGCCATTGCTATTGGTGCGGTTTTTATTGTATGCCTGATCATTACATGCAGCTTATGGACCTCGGCTATCATCTTGTTGGTGTTGGCAATGATTATTGTGGATCTTATGGGCGTGATGGCAATTTTGAATATCCAATTGAACGCAATCTCTGTCGTCAATCTTGTCATGTCTGTGGGAATTGCTGTTGAATTTTGTGTGCATTTGACACATGCTTTCTCGGTAAGCAGCGGAGATAGAAATCAACGGATGAAGGAGGCTCTTAGTACAATGGGAGCATCTGTTCTTAGTGGAATCACACTAACAAAGCTAGTCGGGGTCCTTGTACTTTGCTTCTCTAGGACAGAAGTTTTTGTGGTCTATTATTTCCATGTGTACTTGGCATTAGTACTTCTTGGATTTTTGCACGGCCTCGTATTCTTGCCGGTAGTGTTGAGCTTGTTCGGTCCACCTTCAAGATGTGTATTCGTCGAGCAACAGGACAATCGGCCCTCTACTTCGTCTCGGTCATAAAGAGTTATAATTGAATTTGCATCACAGATGAACAGCCAAAGAGGGTTCCGTAGGCCTTTGAAGGTTTGGCGCACTCATTCATTGGCACACATGCTTAAACGCCAATAAAGAAAGGAAGAAAGAATATATATATATATATACACACACACACATATATATATATATA ATGAGGGCTGCTCAAGAATTGAGTTCGAGGCTTTCTGATTCTTTGAAGATAGAGATCTTTCCCTACTCTGTATTTTACATGTTTTTTGAGCAATACCTCAATATATGGAGGACAGCGTTGATCAACCTTGCCATTGCTATTGGTGCGGTTTTTATTGTATGCCTGATCATTACATGCAGCTTATGGACCTCGGCTATCATCTTGTTGGTGTTGGCAATGATTATTGTGGATCTTATGGGCGTGATGGCAATTTTGAATATCCAATTGAACGCAATCTCTGTCGTCAATCTTGTCATGTCTGTGGGAATTGCTGTTGAATTTTGTGTGCATTTGACACATGCTTTCTCGGTAAGCAGCGGAGATAGAAATCAACGGATGAAGGAGGCTCTTAGTACAATGGGAGCATCTGTTCTTAGTGGAATCACACTAACAAAGCTAGTCGGGGTCCTTGTACTTTGCTTCTCTAGGACAGAAGTTTTTGTGGTCTATTATTTCCATGTGTACTTGGCATTAGTACTTCTTGGATTTTTGCACGGCCTCGTATTCTTGCCGGTAGTGTTGAGCTTGTTCGGTCCACCTTCAAGATGTGTATTCGTCGAGCAACAGGACAATCGGCCCTCTACTTCGTCTCGGTCATAA MRAAQELSSRLSDSLKIEIFPYSVFYMFFEQYLNIWRTALINLAIAIGAVFIVCLIITCSLWTSAIILLVLAMIIVDLMGVMAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGITLTKLVGVLVLCFSRTEVFVVYYFHVYLALVLLGFLHGLVFLPVVLSLFGPPSRCVFVEQQDNRPSTSSRS*
BLAST of MELO3C017026T1 vs. Swiss-Prot
Match: NPC1_MOUSE (Niemann-Pick C1 protein OS=Mus musculus GN=Npc1 PE=1 SV=2) HSP 1 Score: 204.1 bits (518), Expect = 1.5e-51 Identity = 97/199 (48.74%), Postives = 151/199 (75.88%), Query Frame = 1
BLAST of MELO3C017026T1 vs. Swiss-Prot
Match: NPC1_HUMAN (Niemann-Pick C1 protein OS=Homo sapiens GN=NPC1 PE=1 SV=2) HSP 1 Score: 202.6 bits (514), Expect = 4.3e-51 Identity = 97/199 (48.74%), Postives = 148/199 (74.37%), Query Frame = 1
BLAST of MELO3C017026T1 vs. Swiss-Prot
Match: NPC1_PIG (Niemann-Pick C1 protein OS=Sus scrofa GN=NPC1 PE=2 SV=1) HSP 1 Score: 201.8 bits (512), Expect = 7.3e-51 Identity = 97/199 (48.74%), Postives = 148/199 (74.37%), Query Frame = 1
BLAST of MELO3C017026T1 vs. Swiss-Prot
Match: NPC1_YEAST (Niemann-Pick type C-related protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NCR1 PE=1 SV=1) HSP 1 Score: 159.1 bits (401), Expect = 5.5e-38 Identity = 81/190 (42.63%), Postives = 127/190 (66.84%), Query Frame = 1
BLAST of MELO3C017026T1 vs. Swiss-Prot
Match: NPCL1_HUMAN (Niemann-Pick C1-like protein 1 OS=Homo sapiens GN=NPC1L1 PE=1 SV=2) HSP 1 Score: 153.3 bits (386), Expect = 3.0e-36 Identity = 80/202 (39.60%), Postives = 130/202 (64.36%), Query Frame = 1
BLAST of MELO3C017026T1 vs. TrEMBL
Match: A0A0A0L4L2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G658620 PE=4 SV=1) HSP 1 Score: 406.8 bits (1044), Expect = 1.7e-110 Identity = 211/212 (99.53%), Postives = 212/212 (100.00%), Query Frame = 1
BLAST of MELO3C017026T1 vs. TrEMBL
Match: A0A068UFF5_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00024510001 PE=4 SV=1) HSP 1 Score: 374.8 bits (961), Expect = 7.0e-101 Identity = 187/211 (88.63%), Postives = 205/211 (97.16%), Query Frame = 1
BLAST of MELO3C017026T1 vs. TrEMBL
Match: M1AM77_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400009984 PE=4 SV=1) HSP 1 Score: 369.8 bits (948), Expect = 2.3e-99 Identity = 183/211 (86.73%), Postives = 204/211 (96.68%), Query Frame = 1
BLAST of MELO3C017026T1 vs. TrEMBL
Match: M1AM78_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400009984 PE=4 SV=1) HSP 1 Score: 369.8 bits (948), Expect = 2.3e-99 Identity = 183/211 (86.73%), Postives = 204/211 (96.68%), Query Frame = 1
BLAST of MELO3C017026T1 vs. TrEMBL
Match: K4BVX6_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1) HSP 1 Score: 367.1 bits (941), Expect = 1.5e-98 Identity = 181/211 (85.78%), Postives = 203/211 (96.21%), Query Frame = 1
BLAST of MELO3C017026T1 vs. TAIR10
Match: AT4G38350.2 (AT4G38350.2 Patched family protein) HSP 1 Score: 312.0 bits (798), Expect = 2.8e-85 Identity = 153/210 (72.86%), Postives = 182/210 (86.67%), Query Frame = 1
BLAST of MELO3C017026T1 vs. TAIR10
Match: AT1G42470.1 (AT1G42470.1 Patched family protein) HSP 1 Score: 194.9 bits (494), Expect = 5.1e-50 Identity = 93/116 (80.17%), Postives = 109/116 (93.97%), Query Frame = 1
BLAST of MELO3C017026T1 vs. NCBI nr
Match: gi|659104696|ref|XP_008452964.1| (PREDICTED: Niemann-Pick C1 protein isoform X1 [Cucumis melo]) HSP 1 Score: 408.3 bits (1048), Expect = 8.3e-111 Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 1
BLAST of MELO3C017026T1 vs. NCBI nr
Match: gi|659104698|ref|XP_008452965.1| (PREDICTED: Niemann-Pick C1 protein isoform X2 [Cucumis melo]) HSP 1 Score: 408.3 bits (1048), Expect = 8.3e-111 Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 1
BLAST of MELO3C017026T1 vs. NCBI nr
Match: gi|778697176|ref|XP_011654272.1| (PREDICTED: Niemann-Pick C1 protein isoform X2 [Cucumis sativus]) HSP 1 Score: 406.8 bits (1044), Expect = 2.4e-110 Identity = 211/212 (99.53%), Postives = 212/212 (100.00%), Query Frame = 1
BLAST of MELO3C017026T1 vs. NCBI nr
Match: gi|778697173|ref|XP_011654271.1| (PREDICTED: Niemann-Pick C1 protein isoform X1 [Cucumis sativus]) HSP 1 Score: 406.8 bits (1044), Expect = 2.4e-110 Identity = 211/212 (99.53%), Postives = 212/212 (100.00%), Query Frame = 1
BLAST of MELO3C017026T1 vs. NCBI nr
Match: gi|661888842|emb|CDP07285.1| (unnamed protein product [Coffea canephora]) HSP 1 Score: 374.8 bits (961), Expect = 1.0e-100 Identity = 187/211 (88.63%), Postives = 205/211 (97.16%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
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