MELO3C016803.2.1 (mRNA) Melon (DHL92) v3.6.1

Overview
NameMELO3C016803.2.1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionProtein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic
Locationchr07 : 1984709 .. 1987290 (-)
Sequence length797
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAAGTTTATATCCCTATCAGGATAATTAAAAAAGAATTGTATTAGTTATCCATAAAAGTGGTACTAAGTGTAATTATACCAAAATTTACACGGATTGTTCTACAAAGGAAATCCCTTATCGCTGCCGCTGAGGTATACAATGAAAACGTTCGATCTCAACATCTCTTTCCGCTCGAGCTAATTGTCGTTTCTTCTTTCAATTTTCGCACCCTTTTTCTATTTCATTCTTGATTCCACTCGTTTCTCCGTTTGTGGCGTCTCAGCTGCGAGCAATGGTACTCACCAACTTCAATGGAGCTGGCGTTGGATTCGGTACGATGGGTTTAATGATCTTTAGTTCGTTGTGATATATTTTCTACATTTTTATCTTTTCTCTGTCTTTTTAACTGATTCTTGCTGTTATTCTTTTTATTTGGAGGTTTTGGTGTCGGTTGTGGGTTCGGCATAGGATGGGGTTTCGGAGGTATGTGTCAGACCCCAGTAATTAAGCATCGTTTCTTTTTCGGGCTTGGTTTTCTCATGTACCTTTGTAACTTTGGGAGCTTGTTCATGATTTCAGGCTTTTTGTTTATCTGCATTGTTTCCTAGTTAGGTTGGATTTAATATATTGGCTATGTGAAGTCGGCTGAAAGGAATTTGGGGAATATTATGAAATGAATGCTACAGAACCCTGAGGCTTTTGAATTATGAATTGGGAAAGATTTGTGTAAGCAACACATATCAGAAAGGGGGTTTGGGTTTGATGATTAGTTTGTCTTTTGAAAATGATTTGTCATGTTCTTGTTAAGCTATAGTTGGTGCTTGGCAATGTAATGACTGGCTGGTCCGAGATATACCAAGTTAACAAGTTATTTACTTGGATTAAAATTGAGCCTTTTCTTTTGGCAAAAGTGGTGAAGATGGTGGAGTTGCTTTGTGATTGGTAGGGGCAGAACAACGAAATGTAAGGCTGCAAGTTATAACTATACTGTACTTGTAAACTCGCTTATGAATTGGTTACTGCTGATATATCGACATCATTGATTTAAAGATGTCTACATCTAGCCACAGACATCACTTGGAATTCCAGTGCAACCTCCAACAGCGAGTAGTTCTTGAATACCCCATGTATTATGTTTGTATCAATGTGTGTGAAATCTATCGTTAAATTTGCACTAAAAGAAGTATATATACCTGTTGGGTTTTTGTCTTGTTCAATGAGAGCTTTTACATCAGTAGTCGTGGAGTATCTTGTCTTGGCTATTGAAGGATTAATAGTTTTTGAGTTTAACGCAGGGTTCTTATTGACAACTAAGCCAACCCCATGATGACCTATGGGTTTTTTTAACATCGGAAGTTGGAAGGAGTCGAACACTTCCACAGATTAATTGAAAGCGTGTAAGCTGCCTTGGATACCTATAGGCAAGAATCTTGACGGGATAGAAACAAAATTCTGTGCTTCTGTTGCAACTCTTGTTTCGCTATTTTGTTTAAGATATTAGAGGAGTCTGGAACTTTAAGTTGGTCACCATCCTCGATATTCGAATGTTGTAGGACTAGATGGGTTGTTCCGTGTGATTAGTTGAGGTGCGTGTAAGCTGATTTAGACACTCACAAATATAAAAGAAAATATACGTAATACTATCTTGTTCCCACATTGCTATATAGAAGACTTCGTTTTCAGTGATCCGTTAAGATTTCTTCTGCATTAGAACTGGGTTTTAATTTCTGCAGAGTAGCCATGGAAGTTATGGTTCTGCATTTGACTTCTTAGATCCAGTTGTACATTCCATTGTCTCCCTTTAAATTTTCCAGACACATTAGTCTTTAACATGGAAGATATAGTTTTATCTGCCATTACATGCCTCACCTGAATAAAGATGTTTCTTTTACAGGAATGCCTTTGAACTTCTTGGGCCTTGGCGCGGGTAACCAACTAGAACACTCGTACCAACTATTTTCCTTAAAGACATTCATCTCATTGAGCTTTGCTTATTTATTTTGTAATCCTTTTCTGTAGGTGGTGGGTGTGGCGTTGGATTAGGACTTGGATGGGGATTTGGCACAGCTTTCGGGAGTAAGTATCGGTCCTCAAGGATGATATTTCAGGGAATGGAATTCGACAGCAAGGATCAAAATCAGAGTTATGATATCAAGGACTCGAAAGATTCATCCAGAAATTCCAGAAAACTTTGAGCTTAATATCTCCCTTATTATTGGCTAGTTTAATTAAGCCTTCAGCATTTTGGGCTCTTTTGAACCCTTTTTGGATGGAATTGTGACAACATCTGATCGAATACTTGCACCGCACTACATCTGATTGTATAAAGATTACCTTTCTCTTGTCCACTAACTTTTCAGAAAAACAGTAAAGTTGGTAAAACTCCTAACCGTAAGGTCATTCACGATCTCTGCACCAATCTTCATGCGGATTGTGCTTTCAACCTGAATTACTTTGCATGGTTTCAAAAGCTTGTGGGATCCTTGGCGGTTACTCTGTTCATTCTTTTGCTTTCTTATATATATGTAGCGTTATTTTTTCTTCCAGTCGTGCAGTTGCATTTAGTTAGCGAATAGACATGACAAGAAACTATTTGGTGCA

mRNA sequence

GAAAGTTTATATCCCTATCAGGATAATTAAAAAAGAATTGTATTAGTTATCCATAAAAGTGGTACTAAGTGTAATTATACCAAAATTTACACGGATTGTTCTACAAAGGAAATCCCTTATCGCTGCCGCTGAGCTGCGAGCAATGGTACTCACCAACTTCAATGGAGCTGGCGTTGGATTCGGAATGCCTTTGAACTTCTTGGGCCTTGGCGCGGGTGGTGGGTGTGGCGTTGGATTAGGACTTGGATGGGGATTTGGCACAGCTTTCGGGAGTAAGTATCGGTCCTCAAGGATGATATTTCAGGGAATGGAATTCGACAGCAAGGATCAAAATCAGAGTTATGATATCAAGGACTCGAAAGATTCATCCAGAAATTCCAGAAAACTTTGAGCTTAATATCTCCCTTATTATTGGCTAGTTTAATTAAGCCTTCAGCATTTTGGGCTCTTTTGAACCCTTTTTGGATGGAATTGTGACAACATCTGATCGAATACTTGCACCGCACTACATCTGATTGTATAAAGATTACCTTTCTCTTGTCCACTAACTTTTCAGAAAAACAGTAAAGTTGGTAAAACTCCTAACCGTAAGGTCATTCACGATCTCTGCACCAATCTTCATGCGGATTGTGCTTTCAACCTGAATTACTTTGCATGGTTTCAAAAGCTTGTGGGATCCTTGGCGGTTACTCTGTTCATTCTTTTGCTTTCTTATATATATGTAGCGTTATTTTTTCTTCCAGTCGTGCAGTTGCATTTAGTTAGCGAATAGACATGACAAGAAACTATTTGGTGCA

Coding sequence (CDS)

ATGGTACTCACCAACTTCAATGGAGCTGGCGTTGGATTCGGAATGCCTTTGAACTTCTTGGGCCTTGGCGCGGGTGGTGGGTGTGGCGTTGGATTAGGACTTGGATGGGGATTTGGCACAGCTTTCGGGAGTAAGTATCGGTCCTCAAGGATGATATTTCAGGGAATGGAATTCGACAGCAAGGATCAAAATCAGAGTTATGATATCAAGGACTCGAAAGATTCATCCAGAAATTCCAGAAAACTTTGA

Protein sequence

MVLTNFNGAGVGFGMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGMEFDSKDQNQSYDIKDSKDSSRNSRKL
Homology
[Close]
BLAST of MELO3C016803.2.1 vs. NCBI nr
Match: XP_008452625.1 (PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X2 [Cucumis melo] >XP_008452626.1 PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 82.8 bits (203), Expect = 5.9e-13
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MVLTNFNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFGSKYRSSRMIFQGMEFDS 60
          MVLTNFNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFGSKYRSSRMIFQGMEFDS
Sbjct: 1  MVLTNFNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFGSKYRSSRMIFQGMEFDS 60

Query: 61 KDQNQSYDIKDSKDSSRNSRKL 83
          KDQNQSYDIKDSKDSSRNSRKL
Sbjct: 61 KDQNQSYDIKDSKDSSRNSRKL 82

[Close]
BLAST of MELO3C016803.2.1 vs. NCBI nr
Match: XP_008452624.1 (PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 81.3 bits (199), Expect = 1.7e-12
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0 

Query: 41 AFGSKYRSSRMIFQGMEFDSKDQNQSYDIKDSKDSSRNSRKL 83
          AFGSKYRSSRMIFQGMEFDSKDQNQSYDIKDSKDSSRNSRKL
Sbjct: 56 AFGSKYRSSRMIFQGMEFDSKDQNQSYDIKDSKDSSRNSRKL 97

[Close]
BLAST of MELO3C016803.2.1 vs. NCBI nr
Match: XP_004141282.1 (PREDICTED: keratin-associated protein 6-2 isoform X2 [Cucumis sativus] >KGN55253.1 hypothetical protein Csa_4G642340 [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 9.5e-11
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 0 

Query: 41 AFGSKYRSSRMIFQGMEFDSKDQNQSYDIKDSKDSSRNSRKL 83
          AFGSKYRSSRMIFQGMEFD+KDQNQSYD+KDSKD SRNSRK+
Sbjct: 56 AFGSKYRSSRMIFQGMEFDNKDQNQSYDMKDSKDLSRNSRKV 97

[Close]
BLAST of MELO3C016803.2.1 vs. NCBI nr
Match: XP_022937244.1 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 [Cucurbita moschata] >XP_022937245.1 protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 [Cucurbita moschata] >XP_022937246.1 protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 [Cucurbita moschata] >XP_023535926.1 protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 70.1 bits (170), Expect = 4.0e-09
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 0 

Query: 41 AFGSKYRSSRMIFQGMEFDSKDQNQSYDIKDSKDSSRNSRK 82
          A+GSKYRSSRMIFQGME D+KDQNQSYD KDSKD SRNSRK
Sbjct: 56 AYGSKYRSSRMIFQGMELDNKDQNQSYDSKDSKDLSRNSRK 96

[Close]
BLAST of MELO3C016803.2.1 vs. NCBI nr
Match: XP_022937247.1 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X2 [Cucurbita moschata] >XP_023535927.1 protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 70.1 bits (170), Expect = 4.0e-09
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 0 

Query: 41 AFGSKYRSSRMIFQGMEFDSKDQNQSYDIKDSKDSSRNSRK 82
          A+GSKYRSSRMIFQGME D+KDQNQSYD KDSKD SRNSRK
Sbjct: 54 AYGSKYRSSRMIFQGMELDNKDQNQSYDSKDSKDLSRNSRK 94

[Close]
BLAST of MELO3C016803.2.1 vs. TrEMBL
Match: tr|A0A1S3BTP1|A0A1S3BTP1_CUCME (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103493589 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.9e-13
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MVLTNFNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFGSKYRSSRMIFQGMEFDS 60
          MVLTNFNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFGSKYRSSRMIFQGMEFDS
Sbjct: 1  MVLTNFNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFGSKYRSSRMIFQGMEFDS 60

Query: 61 KDQNQSYDIKDSKDSSRNSRKL 83
          KDQNQSYDIKDSKDSSRNSRKL
Sbjct: 61 KDQNQSYDIKDSKDSSRNSRKL 82

[Close]
BLAST of MELO3C016803.2.1 vs. TrEMBL
Match: tr|A0A1S3BVF8|A0A1S3BVF8_CUCME (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493589 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-12
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0 

Query: 41 AFGSKYRSSRMIFQGMEFDSKDQNQSYDIKDSKDSSRNSRKL 83
          AFGSKYRSSRMIFQGMEFDSKDQNQSYDIKDSKDSSRNSRKL
Sbjct: 56 AFGSKYRSSRMIFQGMEFDSKDQNQSYDIKDSKDSSRNSRKL 97

[Close]
BLAST of MELO3C016803.2.1 vs. TrEMBL
Match: tr|A0A0A0L0F8|A0A0A0L0F8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G642340 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.3e-11
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 0 

Query: 41 AFGSKYRSSRMIFQGMEFDSKDQNQSYDIKDSKDSSRNSRKL 83
          AFGSKYRSSRMIFQGMEFD+KDQNQSYD+KDSKD SRNSRK+
Sbjct: 56 AFGSKYRSSRMIFQGMEFDNKDQNQSYDMKDSKDLSRNSRKV 97

The following BLAST results are available for this feature:
BLAST of MELO3C016803.2.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008452625.15.9e-13100.00PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X2 [Cucu... [more]
XP_008452624.11.7e-12100.00PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 [Cucu... [more]
XP_004141282.19.5e-1190.48PREDICTED: keratin-associated protein 6-2 isoform X2 [Cucumis sativus] >KGN55253... [more]
XP_022937244.14.0e-0987.80protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 [Cucurbita mosch... [more]
XP_022937247.14.0e-0987.80protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X2 [Cucurbita mosch... [more]
BLAST of MELO3C016803.2.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C016803.2.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C016803.2.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BTP1|A0A1S3BTP1_CUCME3.9e-13100.00protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X2 OS=Cucumis melo ... [more]
tr|A0A1S3BVF8|A0A1S3BVF8_CUCME1.1e-12100.00protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 OS=Cucumis melo ... [more]
tr|A0A0A0L0F8|A0A0A0L0F8_CUCSA6.3e-1190.48Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G642340 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:1901965 endoplasmic reticulum to chloroplast transport
biological_process GO:1990052 ER to chloroplast lipid transport
biological_process GO:0006869 lipid transport
biological_process GO:0006810 transport
cellular_component GO:0009507 chloroplast
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0031969 chloroplast membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
cellular_component GO:0009536 plastid
molecular_function GO:0005319 lipid transporter activity
molecular_function GO:0005515 protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C016803.2MELO3C016803.2gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C016803.2.1MELO3C016803.2.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C016803.2.1.five_prime_UTR.2MELO3C016803.2.1.five_prime_UTR.2five_prime_UTR
MELO3C016803.2.1.five_prime_UTR.1MELO3C016803.2.1.five_prime_UTR.1five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C016803.2.1.exon.4MELO3C016803.2.1.exon.4exon
MELO3C016803.2.1.exon.3MELO3C016803.2.1.exon.3exon
MELO3C016803.2.1.exon.2MELO3C016803.2.1.exon.2exon
MELO3C016803.2.1.exon.1MELO3C016803.2.1.exon.1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C016803.2.1.CDS.3MELO3C016803.2.1.CDS.3CDS
MELO3C016803.2.1.CDS.2MELO3C016803.2.1.CDS.2CDS
MELO3C016803.2.1.CDS.1MELO3C016803.2.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C016803.2.1.three_prime_UTR.1MELO3C016803.2.1.three_prime_UTR.1three_prime_UTR


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..82
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..82