MELO3C016803.2 (gene) Melon (DHL92) v3.6.1

NameMELO3C016803.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionProtein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic
Locationchr07 : 1984709 .. 1987290 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAAGTTTATATCCCTATCAGGATAATTAAAAAAGAATTGTATTAGTTATCCATAAAAGTGGTACTAAGTGTAATTATACCAAAATTTACACGGATTGTTCTACAAAGGAAATCCCTTATCGCTGCCGCTGAGGTATACAATGAAAACGTTCGATCTCAACATCTCTTTCCGCTCGAGCTAATTGTCGTTTCTTCTTTCAATTTTCGCACCCTTTTTCTATTTCATTCTTGATTCCACTCGTTTCTCCGTTTGTGGCGTCTCAGCTGCGAGCAATGGTACTCACCAACTTCAATGGAGCTGGCGTTGGATTCGGTACGATGGGTTTAATGATCTTTAGTTCGTTGTGATATATTTTCTACATTTTTATCTTTTCTCTGTCTTTTTAACTGATTCTTGCTGTTATTCTTTTTATTTGGAGGTTTTGGTGTCGGTTGTGGGTTCGGCATAGGATGGGGTTTCGGAGGTATGTGTCAGACCCCAGTAATTAAGCATCGTTTCTTTTTCGGGCTTGGTTTTCTCATGTACCTTTGTAACTTTGGGAGCTTGTTCATGATTTCAGGCTTTTTGTTTATCTGCATTGTTTCCTAGTTAGGTTGGATTTAATATATTGGCTATGTGAAGTCGGCTGAAAGGAATTTGGGGAATATTATGAAATGAATGCTACAGAACCCTGAGGCTTTTGAATTATGAATTGGGAAAGATTTGTGTAAGCAACACATATCAGAAAGGGGGTTTGGGTTTGATGATTAGTTTGTCTTTTGAAAATGATTTGTCATGTTCTTGTTAAGCTATAGTTGGTGCTTGGCAATGTAATGACTGGCTGGTCCGAGATATACCAAGTTAACAAGTTATTTACTTGGATTAAAATTGAGCCTTTTCTTTTGGCAAAAGTGGTGAAGATGGTGGAGTTGCTTTGTGATTGGTAGGGGCAGAACAACGAAATGTAAGGCTGCAAGTTATAACTATACTGTACTTGTAAACTCGCTTATGAATTGGTTACTGCTGATATATCGACATCATTGATTTAAAGATGTCTACATCTAGCCACAGACATCACTTGGAATTCCAGTGCAACCTCCAACAGCGAGTAGTTCTTGAATACCCCATGTATTATGTTTGTATCAATGTGTGTGAAATCTATCGTTAAATTTGCACTAAAAGAAGTATATATACCTGTTGGGTTTTTGTCTTGTTCAATGAGAGCTTTTACATCAGTAGTCGTGGAGTATCTTGTCTTGGCTATTGAAGGATTAATAGTTTTTGAGTTTAACGCAGGGTTCTTATTGACAACTAAGCCAACCCCATGATGACCTATGGGTTTTTTTAACATCGGAAGTTGGAAGGAGTCGAACACTTCCACAGATTAATTGAAAGCGTGTAAGCTGCCTTGGATACCTATAGGCAAGAATCTTGACGGGATAGAAACAAAATTCTGTGCTTCTGTTGCAACTCTTGTTTCGCTATTTTGTTTAAGATATTAGAGGAGTCTGGAACTTTAAGTTGGTCACCATCCTCGATATTCGAATGTTGTAGGACTAGATGGGTTGTTCCGTGTGATTAGTTGAGGTGCGTGTAAGCTGATTTAGACACTCACAAATATAAAAGAAAATATACGTAATACTATCTTGTTCCCACATTGCTATATAGAAGACTTCGTTTTCAGTGATCCGTTAAGATTTCTTCTGCATTAGAACTGGGTTTTAATTTCTGCAGAGTAGCCATGGAAGTTATGGTTCTGCATTTGACTTCTTAGATCCAGTTGTACATTCCATTGTCTCCCTTTAAATTTTCCAGACACATTAGTCTTTAACATGGAAGATATAGTTTTATCTGCCATTACATGCCTCACCTGAATAAAGATGTTTCTTTTACAGGAATGCCTTTGAACTTCTTGGGCCTTGGCGCGGGTAACCAACTAGAACACTCGTACCAACTATTTTCCTTAAAGACATTCATCTCATTGAGCTTTGCTTATTTATTTTGTAATCCTTTTCTGTAGGTGGTGGGTGTGGCGTTGGATTAGGACTTGGATGGGGATTTGGCACAGCTTTCGGGAGTAAGTATCGGTCCTCAAGGATGATATTTCAGGGAATGGAATTCGACAGCAAGGATCAAAATCAGAGTTATGATATCAAGGACTCGAAAGATTCATCCAGAAATTCCAGAAAACTTTGAGCTTAATATCTCCCTTATTATTGGCTAGTTTAATTAAGCCTTCAGCATTTTGGGCTCTTTTGAACCCTTTTTGGATGGAATTGTGACAACATCTGATCGAATACTTGCACCGCACTACATCTGATTGTATAAAGATTACCTTTCTCTTGTCCACTAACTTTTCAGAAAAACAGTAAAGTTGGTAAAACTCCTAACCGTAAGGTCATTCACGATCTCTGCACCAATCTTCATGCGGATTGTGCTTTCAACCTGAATTACTTTGCATGGTTTCAAAAGCTTGTGGGATCCTTGGCGGTTACTCTGTTCATTCTTTTGCTTTCTTATATATATGTAGCGTTATTTTTTCTTCCAGTCGTGCAGTTGCATTTAGTTAGCGAATAGACATGACAAGAAACTATTTGGTGCA

mRNA sequence

GAAAGTTTATATCCCTATCAGGATAATTAAAAAAGAATTGTATTAGTTATCCATAAAAGTGGTACTAAGTGTAATTATACCAAAATTTACACGGATTGTTCTACAAAGGAAATCCCTTATCGCTGCCGCTGAGCTGCGAGCAATGGTACTCACCAACTTCAATGGAGCTGGCGTTGGATTCGGAATGCCTTTGAACTTCTTGGGCCTTGGCGCGGGTGGTGGGTGTGGCGTTGGATTAGGACTTGGATGGGGATTTGGCACAGCTTTCGGGAGTAAGTATCGGTCCTCAAGGATGATATTTCAGGGAATGGAATTCGACAGCAAGGATCAAAATCAGAGTTATGATATCAAGGACTCGAAAGATTCATCCAGAAATTCCAGAAAACTTTGAGCTTAATATCTCCCTTATTATTGGCTAGTTTAATTAAGCCTTCAGCATTTTGGGCTCTTTTGAACCCTTTTTGGATGGAATTGTGACAACATCTGATCGAATACTTGCACCGCACTACATCTGATTGTATAAAGATTACCTTTCTCTTGTCCACTAACTTTTCAGAAAAACAGTAAAGTTGGTAAAACTCCTAACCGTAAGGTCATTCACGATCTCTGCACCAATCTTCATGCGGATTGTGCTTTCAACCTGAATTACTTTGCATGGTTTCAAAAGCTTGTGGGATCCTTGGCGGTTACTCTGTTCATTCTTTTGCTTTCTTATATATATGTAGCGTTATTTTTTCTTCCAGTCGTGCAGTTGCATTTAGTTAGCGAATAGACATGACAAGAAACTATTTGGTGCA

Coding sequence (CDS)

ATGGTACTCACCAACTTCAATGGAGCTGGCGTTGGATTCGGAATGCCTTTGAACTTCTTGGGCCTTGGCGCGGGTGGTGGGTGTGGCGTTGGATTAGGACTTGGATGGGGATTTGGCACAGCTTTCGGGAGTAAGTATCGGTCCTCAAGGATGATATTTCAGGGAATGGAATTCGACAGCAAGGATCAAAATCAGAGTTATGATATCAAGGACTCGAAAGATTCATCCAGAAATTCCAGAAAACTTTGA

Protein sequence

MVLTNFNGAGVGFGMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGMEFDSKDQNQSYDIKDSKDSSRNSRKL
BLAST of MELO3C016803.2 vs. NCBI nr
Match: XP_008452625.1 (PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X2 [Cucumis melo] >XP_008452626.1 PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 82.8 bits (203), Expect = 5.9e-13
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0

Query: 1  MVLTNFNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFGSKYRSSRMIFQGMEFDS 60
          MVLTNFNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFGSKYRSSRMIFQGMEFDS
Sbjct: 1  MVLTNFNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFGSKYRSSRMIFQGMEFDS 60

Query: 61 KDQNQSYDIKDSKDSSRNSRKL 83
          KDQNQSYDIKDSKDSSRNSRKL
Sbjct: 61 KDQNQSYDIKDSKDSSRNSRKL 82

BLAST of MELO3C016803.2 vs. NCBI nr
Match: XP_008452624.1 (PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 81.3 bits (199), Expect = 1.7e-12
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0

Query: 41 AFGSKYRSSRMIFQGMEFDSKDQNQSYDIKDSKDSSRNSRKL 83
          AFGSKYRSSRMIFQGMEFDSKDQNQSYDIKDSKDSSRNSRKL
Sbjct: 56 AFGSKYRSSRMIFQGMEFDSKDQNQSYDIKDSKDSSRNSRKL 97

BLAST of MELO3C016803.2 vs. NCBI nr
Match: XP_004141282.1 (PREDICTED: keratin-associated protein 6-2 isoform X2 [Cucumis sativus] >KGN55253.1 hypothetical protein Csa_4G642340 [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 9.5e-11
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 0

Query: 41 AFGSKYRSSRMIFQGMEFDSKDQNQSYDIKDSKDSSRNSRKL 83
          AFGSKYRSSRMIFQGMEFD+KDQNQSYD+KDSKD SRNSRK+
Sbjct: 56 AFGSKYRSSRMIFQGMEFDNKDQNQSYDMKDSKDLSRNSRKV 97

BLAST of MELO3C016803.2 vs. NCBI nr
Match: XP_022937244.1 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 [Cucurbita moschata] >XP_022937245.1 protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 [Cucurbita moschata] >XP_022937246.1 protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 [Cucurbita moschata] >XP_023535926.1 protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 70.1 bits (170), Expect = 4.0e-09
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 0

Query: 41 AFGSKYRSSRMIFQGMEFDSKDQNQSYDIKDSKDSSRNSRK 82
          A+GSKYRSSRMIFQGME D+KDQNQSYD KDSKD SRNSRK
Sbjct: 56 AYGSKYRSSRMIFQGMELDNKDQNQSYDSKDSKDLSRNSRK 96

BLAST of MELO3C016803.2 vs. NCBI nr
Match: XP_022937247.1 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X2 [Cucurbita moschata] >XP_023535927.1 protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 70.1 bits (170), Expect = 4.0e-09
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 0

Query: 41 AFGSKYRSSRMIFQGMEFDSKDQNQSYDIKDSKDSSRNSRK 82
          A+GSKYRSSRMIFQGME D+KDQNQSYD KDSKD SRNSRK
Sbjct: 54 AYGSKYRSSRMIFQGMELDNKDQNQSYDSKDSKDLSRNSRK 94

BLAST of MELO3C016803.2 vs. TrEMBL
Match: tr|A0A1S3BTP1|A0A1S3BTP1_CUCME (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103493589 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.9e-13
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0

Query: 1  MVLTNFNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFGSKYRSSRMIFQGMEFDS 60
          MVLTNFNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFGSKYRSSRMIFQGMEFDS
Sbjct: 1  MVLTNFNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFGSKYRSSRMIFQGMEFDS 60

Query: 61 KDQNQSYDIKDSKDSSRNSRKL 83
          KDQNQSYDIKDSKDSSRNSRKL
Sbjct: 61 KDQNQSYDIKDSKDSSRNSRKL 82

BLAST of MELO3C016803.2 vs. TrEMBL
Match: tr|A0A1S3BVF8|A0A1S3BVF8_CUCME (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493589 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-12
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0

Query: 41 AFGSKYRSSRMIFQGMEFDSKDQNQSYDIKDSKDSSRNSRKL 83
          AFGSKYRSSRMIFQGMEFDSKDQNQSYDIKDSKDSSRNSRKL
Sbjct: 56 AFGSKYRSSRMIFQGMEFDSKDQNQSYDIKDSKDSSRNSRKL 97

BLAST of MELO3C016803.2 vs. TrEMBL
Match: tr|A0A0A0L0F8|A0A0A0L0F8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G642340 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.3e-11
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 0

Query: 41 AFGSKYRSSRMIFQGMEFDSKDQNQSYDIKDSKDSSRNSRKL 83
          AFGSKYRSSRMIFQGMEFD+KDQNQSYD+KDSKD SRNSRK+
Sbjct: 56 AFGSKYRSSRMIFQGMEFDNKDQNQSYDMKDSKDLSRNSRKV 97

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008452625.15.9e-13100.00PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X2 [Cucu... [more]
XP_008452624.11.7e-12100.00PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 [Cucu... [more]
XP_004141282.19.5e-1190.48PREDICTED: keratin-associated protein 6-2 isoform X2 [Cucumis sativus] >KGN55253... [more]
XP_022937244.14.0e-0987.80protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 [Cucurbita mosch... [more]
XP_022937247.14.0e-0987.80protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X2 [Cucurbita mosch... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S3BTP1|A0A1S3BTP1_CUCME3.9e-13100.00protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X2 OS=Cucumis melo ... [more]
tr|A0A1S3BVF8|A0A1S3BVF8_CUCME1.1e-12100.00protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 OS=Cucumis melo ... [more]
tr|A0A0A0L0F8|A0A0A0L0F8_CUCSA6.3e-1190.48Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G642340 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:1901965 endoplasmic reticulum to chloroplast transport
biological_process GO:1990052 ER to chloroplast lipid transport
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0008210 estrogen metabolic process
biological_process GO:0008207 C21-steroid hormone metabolic process
biological_process GO:0006699 bile acid biosynthetic process
biological_process GO:0008209 androgen metabolic process
biological_process GO:0008150 biological_process
biological_process GO:0006810 transport
biological_process GO:0006869 lipid transport
cellular_component GO:0016020 membrane
cellular_component GO:0009536 plastid
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
cellular_component GO:0031969 chloroplast membrane
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009507 chloroplast
molecular_function GO:0005319 lipid transporter activity
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function
molecular_function GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity
molecular_function GO:0047568 3-oxo-5-beta-steroid 4-dehydrogenase activity
molecular_function GO:0050662 coenzyme binding
molecular_function GO:0047787 delta4-3-oxosteroid 5beta-reductase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C016803.2.1MELO3C016803.2.1mRNA


Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..82
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..82

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C016803.2Watermelon (97103) v2medwmbB499
MELO3C016803.2Wax gourdmedwgoB594
MELO3C016803.2Wax gourdmedwgoB601
MELO3C016803.2Cucumber (Gy14) v2cgybmedB127
MELO3C016803.2Cucumber (Gy14) v2cgybmedB494
MELO3C016803.2Cucumber (Gy14) v1cgymedB380
MELO3C016803.2Cucumber (Gy14) v1cgymedB642
MELO3C016803.2Cucurbita maxima (Rimu)cmamedB152
MELO3C016803.2Cucurbita maxima (Rimu)cmamedB198
MELO3C016803.2Cucurbita maxima (Rimu)cmamedB353
MELO3C016803.2Cucurbita maxima (Rimu)cmamedB499
MELO3C016803.2Cucurbita maxima (Rimu)cmamedB561
MELO3C016803.2Cucurbita maxima (Rimu)cmamedB691
MELO3C016803.2Cucurbita maxima (Rimu)cmamedB787
MELO3C016803.2Cucurbita maxima (Rimu)cmamedB836
MELO3C016803.2Cucurbita maxima (Rimu)cmamedB896
MELO3C016803.2Cucurbita moschata (Rifu)cmomedB029
MELO3C016803.2Cucurbita moschata (Rifu)cmomedB143
MELO3C016803.2Cucurbita moschata (Rifu)cmomedB188
MELO3C016803.2Cucurbita moschata (Rifu)cmomedB341
MELO3C016803.2Cucurbita moschata (Rifu)cmomedB486
MELO3C016803.2Cucurbita moschata (Rifu)cmomedB549
MELO3C016803.2Cucurbita moschata (Rifu)cmomedB683
MELO3C016803.2Cucurbita moschata (Rifu)cmomedB783
MELO3C016803.2Cucurbita moschata (Rifu)cmomedB826
MELO3C016803.2Cucurbita moschata (Rifu)cmomedB885
MELO3C016803.2Cucurbita pepo (Zucchini)cpemedB132
MELO3C016803.2Cucurbita pepo (Zucchini)cpemedB242
MELO3C016803.2Cucurbita pepo (Zucchini)cpemedB285
MELO3C016803.2Cucurbita pepo (Zucchini)cpemedB492
MELO3C016803.2Cucurbita pepo (Zucchini)cpemedB529
MELO3C016803.2Cucurbita pepo (Zucchini)cpemedB638
MELO3C016803.2Cucurbita pepo (Zucchini)cpemedB771
MELO3C016803.2Cucurbita pepo (Zucchini)cpemedB920
MELO3C016803.2Wild cucumber (PI 183967)cpimedB142
MELO3C016803.2Wild cucumber (PI 183967)cpimedB554
MELO3C016803.2Cucumber (Chinese Long) v2cumedB141
MELO3C016803.2Cucumber (Chinese Long) v2cumedB535
MELO3C016803.2Melon (DHL92) v3.6.1medmedB098
MELO3C016803.2Melon (DHL92) v3.6.1medmedB124
MELO3C016803.2Melon (DHL92) v3.6.1medmedB151
MELO3C016803.2Melon (DHL92) v3.6.1medmedB153
MELO3C016803.2Bottle gourd (USVL1VR-Ls)lsimedB285
MELO3C016803.2Bottle gourd (USVL1VR-Ls)lsimedB507
MELO3C016803.2Watermelon (Charleston Gray)medwcgB474
MELO3C016803.2Watermelon (Charleston Gray)medwcgB496
MELO3C016803.2Watermelon (97103) v1medwmB487
MELO3C016803.2Silver-seed gourdcarmedB0191
MELO3C016803.2Silver-seed gourdcarmedB0415
MELO3C016803.2Silver-seed gourdcarmedB0781
MELO3C016803.2Cucumber (Chinese Long) v3cucmedB143
MELO3C016803.2Cucumber (Chinese Long) v3cucmedB306
MELO3C016803.2Cucumber (Chinese Long) v3cucmedB308
MELO3C016803.2Cucumber (Chinese Long) v3cucmedB504
MELO3C016803.2Cucumber (Chinese Long) v3cucmedB568