MELO3C016492T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C016492T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass
Locationchr6 : 25829575 .. 25829799 (+)
Sequence length225
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCATCCCATTGGTGGATGAGCAGACAGAAACTAAAACTATCCCAACAGAGATCCAGAAAGTTCTGAATGAATATGTTGGTATTATACTACCTGAACTGCCAAAGACACTACCTACTCGACGGGGGATTGATCATGAGATCGAACTTGTCCCAAGAACCAAGCCTCCAGTAAATAATGCTTATAGGATGGCTCCACCTGAGTTAGCTAAGCTTAGAAAATAA

mRNA sequence

ATGGCCATCCCATTGGTGGATGAGCAGACAGAAACTAAAACTATCCCAACAGAGATCCAGAAAGTTCTGAATGAATATGTTGGTATTATACTACCTGAACTGCCAAAGACACTACCTACTCGACGGGGGATTGATCATGAGATCGAACTTGTCCCAAGAACCAAGCCTCCAGTAAATAATGCTTATAGGATGGCTCCACCTGAGTTAGCTAAGCTTAGAAAATAA

Coding sequence (CDS)

ATGGCCATCCCATTGGTGGATGAGCAGACAGAAACTAAAACTATCCCAACAGAGATCCAGAAAGTTCTGAATGAATATGTTGGTATTATACTACCTGAACTGCCAAAGACACTACCTACTCGACGGGGGATTGATCATGAGATCGAACTTGTCCCAAGAACCAAGCCTCCAGTAAATAATGCTTATAGGATGGCTCCACCTGAGTTAGCTAAGCTTAGAAAATAA

Protein sequence

MAIPLVDEQTETKTIPTEIQKVLNEYVGIILPELPKTLPTRRGIDHEIELVPRTKPPVNNAYRMAPPELAKLRK*
Homology
[Close]
BLAST of MELO3C016492T1 vs. TrEMBL
Match: A5AN22_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021534 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 6.9e-11
Identity = 35/60 (58.33%), Postives = 44/60 (73.33%), Query Frame = 1 

Query: 15  IPTEIQKVLNEYVGIILPELPKTLPTRRGIDHEIELVPRTKPPVNNAYRMAPPELAKLRK 74
           +P EI+ VL+E+  ++ PELPK LP RR  DH+IEL P TKPP    YRMAPPEL +LR+
Sbjct: 482 MPKEIKGVLDEFKDVMPPELPKRLPPRREEDHKIELEPETKPPAMGPYRMAPPELEELRR 541

[Close]
BLAST of MELO3C016492T1 vs. TrEMBL
Match: A5AYX1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040475 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-10
Identity = 34/60 (56.67%), Postives = 44/60 (73.33%), Query Frame = 1 

Query: 15  IPTEIQKVLNEYVGIILPELPKTLPTRRGIDHEIELVPRTKPPVNNAYRMAPPELAKLRK 74
           +P EI+ VL+E+  ++ PELPK LP RR  DH+IEL P  KPP+   YRMAPPEL +LR+
Sbjct: 426 MPKEIEGVLDEFKDVMSPELPKRLPPRREEDHKIELEPGAKPPIMGPYRMAPPELEELRR 485

[Close]
BLAST of MELO3C016492T1 vs. TrEMBL
Match: A5AZ16_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016761 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.6e-10
Identity = 34/60 (56.67%), Postives = 44/60 (73.33%), Query Frame = 1 

Query: 15  IPTEIQKVLNEYVGIILPELPKTLPTRRGIDHEIELVPRTKPPVNNAYRMAPPELAKLRK 74
           +P EI+ VL+E+  ++ PELPK LP RR  DH+IEL P +KPP    YRMAPPEL +LR+
Sbjct: 553 MPKEIEGVLDEFKDVMPPELPKRLPPRREEDHKIELEPGSKPPAMGPYRMAPPELEELRR 612

[Close]
BLAST of MELO3C016492T1 vs. TrEMBL
Match: A5B3V3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041103 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.4e-10
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 1 

Query: 15  IPTEIQKVLNEYVGIILPELPKTLPTRRGIDHEIELVPRTKPPVNNAYRMAPPELAKLRK 74
           +P EI+ VL+E+  ++ PELPK LP RR  DH+IEL P  KPP    YRMAPPEL +LR+
Sbjct: 276 MPKEIEGVLDEFEDVMPPELPKRLPPRREEDHKIELEPGAKPPAMGPYRMAPPELEELRR 335

[Close]
BLAST of MELO3C016492T1 vs. TrEMBL
Match: A5BDH9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001313 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.4e-10
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 1 

Query: 15  IPTEIQKVLNEYVGIILPELPKTLPTRRGIDHEIELVPRTKPPVNNAYRMAPPELAKLRK 74
           +P EI+ VL+E+  ++ PELPK LP RR  DH+IEL P  KPP    YRMAPPEL +LR+
Sbjct: 596 MPKEIEGVLDEFKDVMPPELPKRLPPRREEDHKIELEPGAKPPAMGPYRMAPPELEELRR 655

[Close]
BLAST of MELO3C016492T1 vs. NCBI nr
Match: gi|659114583|ref|XP_008457127.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496873 [Cucumis melo])

HSP 1 Score: 91.7 bits (226), Expect = 6.0e-16
Identity = 45/74 (60.81%), Postives = 54/74 (72.97%), Query Frame = 1 

Query: 1   MAIPLVDEQTETKTIPTEIQKVLNEYVGIILPELPKTLPTRRGIDHEIELVPRTKPPVNN 60
           MAIPL   +   +T+PTEI +VL +Y  ++    PK+LP RR IDHEIELVP TKP   N
Sbjct: 67  MAIPLNSSENSGETVPTEIVRVLEKYRDVMPDSFPKSLPPRRMIDHEIELVPGTKPRAKN 126

Query: 61  AYRMAPPELAKLRK 75
           AYRMAPPELA+LRK
Sbjct: 127 AYRMAPPELAELRK 140

[Close]
BLAST of MELO3C016492T1 vs. NCBI nr
Match: gi|729315985|ref|XP_010531750.1| (PREDICTED: uncharacterized protein LOC104807978, partial [Tarenaya hassleriana])

HSP 1 Score: 84.0 bits (206), Expect = 1.3e-13
Identity = 38/67 (56.72%), Postives = 50/67 (74.63%), Query Frame = 1 

Query: 8   EQTETKTIPTEIQKVLNEYVGIILPELPKTLPTRRGIDHEIELVPRTKPPVNNAYRMAPP 67
           E+++   IPTE++KVLN++  ++  ELPK LP RRGIDH IEL P  KPP    YRMAPP
Sbjct: 592 EKSDQPAIPTEVRKVLNDFYDVMPEELPKKLPPRRGIDHAIELAPGAKPPAMAPYRMAPP 651

Query: 68  ELAKLRK 75
           ELA+L++
Sbjct: 652 ELAELKR 658

[Close]
BLAST of MELO3C016492T1 vs. NCBI nr
Match: gi|729307976|ref|XP_010529090.1| (PREDICTED: uncharacterized protein LOC104806071 [Tarenaya hassleriana])

HSP 1 Score: 81.6 bits (200), Expect = 6.2e-13
Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = 1 

Query: 8   EQTETKTIPTEIQKVLNEYVGIILPELPKTLPTRRGIDHEIELVPRTKPPVNNAYRMAPP 67
           +  +  TIP E+++VLN++  ++  ELPK LP RRGIDH IEL+P  KPP    YRMAPP
Sbjct: 587 DMPDQPTIPAEVRQVLNDFADVMPEELPKKLPPRRGIDHAIELIPGAKPPAMPPYRMAPP 646

Query: 68  ELAKLRK 75
           ELA+L++
Sbjct: 647 ELAELKR 653

[Close]
BLAST of MELO3C016492T1 vs. NCBI nr
Match: gi|729320756|ref|XP_010533333.1| (PREDICTED: uncharacterized protein LOC104809135, partial [Tarenaya hassleriana])

HSP 1 Score: 80.9 bits (198), Expect = 1.1e-12
Identity = 36/67 (53.73%), Postives = 50/67 (74.63%), Query Frame = 1 

Query: 8   EQTETKTIPTEIQKVLNEYVGIILPELPKTLPTRRGIDHEIELVPRTKPPVNNAYRMAPP 67
           E ++   IP+E++ VL+ +  ++  ELPK LP RRGIDH+IEL+P TKPP    YRMAPP
Sbjct: 601 ESSDQPPIPSEVRVVLDSFADVMPEELPKKLPPRRGIDHQIELIPGTKPPAMAPYRMAPP 660

Query: 68  ELAKLRK 75
           ELA+L++
Sbjct: 661 ELAELKR 667

[Close]
BLAST of MELO3C016492T1 vs. NCBI nr
Match: gi|702516723|ref|XP_010042046.1| (PREDICTED: uncharacterized protein LOC104431053 [Eucalyptus grandis])

HSP 1 Score: 80.5 bits (197), Expect = 1.4e-12
Identity = 37/70 (52.86%), Postives = 48/70 (68.57%), Query Frame = 1 

Query: 5   LVDEQTETKTIPTEIQKVLNEYVGIILPELPKTLPTRRGIDHEIELVPRTKPPVNNAYRM 64
           L +E  E  T+P E+ +VL+ +  ++ PELPK LP RR +DH IELVP  +PP    YRM
Sbjct: 572 LKEEGAEENTVPEEVSRVLDAFQDVMPPELPKKLPPRREVDHRIELVPDARPPAMAPYRM 631

Query: 65  APPELAKLRK 75
           APPEL +LRK
Sbjct: 632 APPELEELRK 641

The following BLAST results are available for this feature:
BLAST of MELO3C016492T1 vs. TrEMBL
Match NameE-valueIdentityDescription
A5AN22_VITVI6.9e-1158.33Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021534 PE=4 SV=1[more]
A5AYX1_VITVI1.2e-1056.67Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040475 PE=4 SV=1[more]
A5AZ16_VITVI2.6e-1056.67Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016761 PE=4 SV=1[more]
A5B3V3_VITVI3.4e-1056.67Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041103 PE=4 SV=1[more]
A5BDH9_VITVI3.4e-1056.67Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001313 PE=4 SV=1[more]
BLAST of MELO3C016492T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659114583|ref|XP_008457127.1|6.0e-1660.81PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496873 [Cucumis me... [more]
gi|729315985|ref|XP_010531750.1|1.3e-1356.72PREDICTED: uncharacterized protein LOC104807978, partial [Tarenaya hassleriana][more]
gi|729307976|ref|XP_010529090.1|6.2e-1353.73PREDICTED: uncharacterized protein LOC104806071 [Tarenaya hassleriana][more]
gi|729320756|ref|XP_010533333.1|1.1e-1253.73PREDICTED: uncharacterized protein LOC104809135, partial [Tarenaya hassleriana][more]
gi|702516723|ref|XP_010042046.1|1.4e-1252.86PREDICTED: uncharacterized protein LOC104431053 [Eucalyptus grandis][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005488 binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C016492MELO3C016492gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C016492T1MELO3C016492T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C016492T1.cds1MELO3C016492T1.cds1CDS