MELO3C016492 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C016492
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Retrotransposon protein, putative, Ty3-gypsy subclass
Location	chr6 : 25829575 .. 25829799 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCATCCCATTGGTGGATGAGCAGACAGAAACTAAAACTATCCCAACAGAGATCCAGAAAGTTCTGAATGAATATGTTGGTATTATACTACCTGAACTGCCAAAGACACTACCTACTCGACGGGGGATTGATCATGAGATCGAACTTGTCCCAAGAACCAAGCCTCCAGTAAATAATGCTTATAGGATGGCTCCACCTGAGTTAGCTAAGCTTAGAAAATAA

mRNA sequence

ATGGCCATCCCATTGGTGGATGAGCAGACAGAAACTAAAACTATCCCAACAGAGATCCAGAAAGTTCTGAATGAATATGTTGGTATTATACTACCTGAACTGCCAAAGACACTACCTACTCGACGGGGGATTGATCATGAGATCGAACTTGTCCCAAGAACCAAGCCTCCAGTAAATAATGCTTATAGGATGGCTCCACCTGAGTTAGCTAAGCTTAGAAAATAA

Coding sequence (CDS)

ATGGCCATCCCATTGGTGGATGAGCAGACAGAAACTAAAACTATCCCAACAGAGATCCAGAAAGTTCTGAATGAATATGTTGGTATTATACTACCTGAACTGCCAAAGACACTACCTACTCGACGGGGGATTGATCATGAGATCGAACTTGTCCCAAGAACCAAGCCTCCAGTAAATAATGCTTATAGGATGGCTCCACCTGAGTTAGCTAAGCTTAGAAAATAA

Protein sequence

MAIPLVDEQTETKTIPTEIQKVLNEYVGIILPELPKTLPTRRGIDHEIELVPRTKPPVNNAYRMAPPELAKLRK*

Homology

[Close]

BLAST of MELO3C016492 vs. TrEMBL
Match: A5AN22_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021534 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 6.9e-11
Identity = 35/60 (58.33%), Postives = 44/60 (73.33%), Query Frame = 1


Query: 15  IPTEIQKVLNEYVGIILPELPKTLPTRRGIDHEIELVPRTKPPVNNAYRMAPPELAKLRK 74
           +P EI+ VL+E+  ++ PELPK LP RR  DH+IEL P TKPP    YRMAPPEL +LR+
Sbjct: 482 MPKEIKGVLDEFKDVMPPELPKRLPPRREEDHKIELEPETKPPAMGPYRMAPPELEELRR 541

[Close]

BLAST of MELO3C016492 vs. TrEMBL
Match: A5AYX1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040475 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-10
Identity = 34/60 (56.67%), Postives = 44/60 (73.33%), Query Frame = 1


Query: 15  IPTEIQKVLNEYVGIILPELPKTLPTRRGIDHEIELVPRTKPPVNNAYRMAPPELAKLRK 74
           +P EI+ VL+E+  ++ PELPK LP RR  DH+IEL P  KPP+   YRMAPPEL +LR+
Sbjct: 426 MPKEIEGVLDEFKDVMSPELPKRLPPRREEDHKIELEPGAKPPIMGPYRMAPPELEELRR 485

[Close]

BLAST of MELO3C016492 vs. TrEMBL
Match: A5AZ16_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016761 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.6e-10
Identity = 34/60 (56.67%), Postives = 44/60 (73.33%), Query Frame = 1


Query: 15  IPTEIQKVLNEYVGIILPELPKTLPTRRGIDHEIELVPRTKPPVNNAYRMAPPELAKLRK 74
           +P EI+ VL+E+  ++ PELPK LP RR  DH+IEL P +KPP    YRMAPPEL +LR+
Sbjct: 553 MPKEIEGVLDEFKDVMPPELPKRLPPRREEDHKIELEPGSKPPAMGPYRMAPPELEELRR 612

[Close]

BLAST of MELO3C016492 vs. TrEMBL
Match: A5B3V3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041103 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.4e-10
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 1


Query: 15  IPTEIQKVLNEYVGIILPELPKTLPTRRGIDHEIELVPRTKPPVNNAYRMAPPELAKLRK 74
           +P EI+ VL+E+  ++ PELPK LP RR  DH+IEL P  KPP    YRMAPPEL +LR+
Sbjct: 276 MPKEIEGVLDEFEDVMPPELPKRLPPRREEDHKIELEPGAKPPAMGPYRMAPPELEELRR 335

[Close]

BLAST of MELO3C016492 vs. TrEMBL
Match: A5BDH9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001313 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.4e-10
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 1


Query: 15  IPTEIQKVLNEYVGIILPELPKTLPTRRGIDHEIELVPRTKPPVNNAYRMAPPELAKLRK 74
           +P EI+ VL+E+  ++ PELPK LP RR  DH+IEL P  KPP    YRMAPPEL +LR+
Sbjct: 596 MPKEIEGVLDEFKDVMPPELPKRLPPRREEDHKIELEPGAKPPAMGPYRMAPPELEELRR 655

[Close]

BLAST of MELO3C016492 vs. NCBI nr
Match: gi|659114583|ref|XP_008457127.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496873 [Cucumis melo])

HSP 1 Score: 91.7 bits (226), Expect = 6.0e-16
Identity = 45/74 (60.81%), Postives = 54/74 (72.97%), Query Frame = 1


Query: 1   MAIPLVDEQTETKTIPTEIQKVLNEYVGIILPELPKTLPTRRGIDHEIELVPRTKPPVNN 60
           MAIPL   +   +T+PTEI +VL +Y  ++    PK+LP RR IDHEIELVP TKP   N
Sbjct: 67  MAIPLNSSENSGETVPTEIVRVLEKYRDVMPDSFPKSLPPRRMIDHEIELVPGTKPRAKN 126

Query: 61  AYRMAPPELAKLRK 75
           AYRMAPPELA+LRK
Sbjct: 127 AYRMAPPELAELRK 140

[Close]

BLAST of MELO3C016492 vs. NCBI nr
Match: gi|729315985|ref|XP_010531750.1| (PREDICTED: uncharacterized protein LOC104807978, partial [Tarenaya hassleriana])

HSP 1 Score: 84.0 bits (206), Expect = 1.3e-13
Identity = 38/67 (56.72%), Postives = 50/67 (74.63%), Query Frame = 1


Query: 8   EQTETKTIPTEIQKVLNEYVGIILPELPKTLPTRRGIDHEIELVPRTKPPVNNAYRMAPP 67
           E+++   IPTE++KVLN++  ++  ELPK LP RRGIDH IEL P  KPP    YRMAPP
Sbjct: 592 EKSDQPAIPTEVRKVLNDFYDVMPEELPKKLPPRRGIDHAIELAPGAKPPAMAPYRMAPP 651

Query: 68  ELAKLRK 75
           ELA+L++
Sbjct: 652 ELAELKR 658

[Close]

BLAST of MELO3C016492 vs. NCBI nr
Match: gi|729307976|ref|XP_010529090.1| (PREDICTED: uncharacterized protein LOC104806071 [Tarenaya hassleriana])

HSP 1 Score: 81.6 bits (200), Expect = 6.2e-13
Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = 1


Query: 8   EQTETKTIPTEIQKVLNEYVGIILPELPKTLPTRRGIDHEIELVPRTKPPVNNAYRMAPP 67
           +  +  TIP E+++VLN++  ++  ELPK LP RRGIDH IEL+P  KPP    YRMAPP
Sbjct: 587 DMPDQPTIPAEVRQVLNDFADVMPEELPKKLPPRRGIDHAIELIPGAKPPAMPPYRMAPP 646

Query: 68  ELAKLRK 75
           ELA+L++
Sbjct: 647 ELAELKR 653

[Close]

BLAST of MELO3C016492 vs. NCBI nr
Match: gi|729320756|ref|XP_010533333.1| (PREDICTED: uncharacterized protein LOC104809135, partial [Tarenaya hassleriana])

HSP 1 Score: 80.9 bits (198), Expect = 1.1e-12
Identity = 36/67 (53.73%), Postives = 50/67 (74.63%), Query Frame = 1


Query: 8   EQTETKTIPTEIQKVLNEYVGIILPELPKTLPTRRGIDHEIELVPRTKPPVNNAYRMAPP 67
           E ++   IP+E++ VL+ +  ++  ELPK LP RRGIDH+IEL+P TKPP    YRMAPP
Sbjct: 601 ESSDQPPIPSEVRVVLDSFADVMPEELPKKLPPRRGIDHQIELIPGTKPPAMAPYRMAPP 660

Query: 68  ELAKLRK 75
           ELA+L++
Sbjct: 661 ELAELKR 667

[Close]

BLAST of MELO3C016492 vs. NCBI nr
Match: gi|702516723|ref|XP_010042046.1| (PREDICTED: uncharacterized protein LOC104431053 [Eucalyptus grandis])

HSP 1 Score: 80.5 bits (197), Expect = 1.4e-12
Identity = 37/70 (52.86%), Postives = 48/70 (68.57%), Query Frame = 1


Query: 5   LVDEQTETKTIPTEIQKVLNEYVGIILPELPKTLPTRRGIDHEIELVPRTKPPVNNAYRM 64
           L +E  E  T+P E+ +VL+ +  ++ PELPK LP RR +DH IELVP  +PP    YRM
Sbjct: 572 LKEEGAEENTVPEEVSRVLDAFQDVMPPELPKKLPPRREVDHRIELVPDARPPAMAPYRM 631

Query: 65  APPELAKLRK 75
           APPEL +LRK
Sbjct: 632 APPELEELRK 641

The following BLAST results are available for this feature:

BLAST of MELO3C016492 vs. TrEMBL


Match Name	E-value	Identity	Description
A5AN22_VITVI	6.9e-11	58.33	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021534 PE=4 SV=1	[more]
A5AYX1_VITVI	1.2e-10	56.67	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040475 PE=4 SV=1	[more]
A5AZ16_VITVI	2.6e-10	56.67	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016761 PE=4 SV=1	[more]
A5B3V3_VITVI	3.4e-10	56.67	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041103 PE=4 SV=1	[more]
A5BDH9_VITVI	3.4e-10	56.67	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001313 PE=4 SV=1	[more]

BLAST of MELO3C016492 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659114583\|ref\|XP_008457127.1\|	6.0e-16	60.81	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496873 [Cucumis me...	[more]
gi\|729315985\|ref\|XP_010531750.1\|	1.3e-13	56.72	PREDICTED: uncharacterized protein LOC104807978, partial [Tarenaya hassleriana]	[more]
gi\|729307976\|ref\|XP_010529090.1\|	6.2e-13	53.73	PREDICTED: uncharacterized protein LOC104806071 [Tarenaya hassleriana]	[more]
gi\|729320756\|ref\|XP_010533333.1\|	1.1e-12	53.73	PREDICTED: uncharacterized protein LOC104809135, partial [Tarenaya hassleriana]	[more]
gi\|702516723\|ref\|XP_010042046.1\|	1.4e-12	52.86	PREDICTED: uncharacterized protein LOC104431053 [Eucalyptus grandis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005488	binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C016492T1	MELO3C016492T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C016492	Silver-seed gourd	carmeB0565
MELO3C016492	Silver-seed gourd	carmeB0670
MELO3C016492	Watermelon (97103) v2	mewmbB431
MELO3C016492	Cucumber (Chinese Long) v3	cucmeB248
MELO3C016492	Wax gourd	mewgoB509
MELO3C016492	Cucumber (Gy14) v1	cgymeB164
MELO3C016492	Cucurbita maxima (Rimu)	cmameB292
MELO3C016492	Cucurbita maxima (Rimu)	cmameB689
MELO3C016492	Cucurbita moschata (Rifu)	cmomeB285
MELO3C016492	Cucurbita moschata (Rifu)	cmomeB680
MELO3C016492	Wild cucumber (PI 183967)	cpimeB242
MELO3C016492	Cucumber (Chinese Long) v2	cumeB244
MELO3C016492	Watermelon (Charleston Gray)	mewcgB416
MELO3C016492	Watermelon (97103) v1	mewmB458
MELO3C016492	Cucurbita pepo (Zucchini)	cpemeB186
MELO3C016492	Cucurbita pepo (Zucchini)	cpemeB409
MELO3C016492	Bottle gourd (USVL1VR-Ls)	lsimeB371
MELO3C016492	Bottle gourd (USVL1VR-Ls)	lsimeB380
MELO3C016492	Cucumber (Gy14) v2	cgybmeB211