MELO3C015582T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C015582T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Mediator of RNA polymerase II transcription subunit 13-like protein
Location	chr2 : 3051009 .. 3053176 (-)
Sequence length	927

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAAATTATTGCGTCATTTGCCCCGATATTGATCCTCTTGCAACAGCTGCTGCTGATTTTTTCCAGCAACTAGGAACGGGTTAGTAACGATTTGTTATTTAATCAAATAAAATGGGTACTTCCAGAGGTCTACTATATAACTAATTCTGCATTTAGTCTCTTGATTAATCTTGTATTTTCCATTTGACTGTTTGAAAAGAAGTATTTTCCTACGGGAGACTGATCTTTAAGAAATGAATAAATACTGTTCTGATGTGGATAAAATTGCCACTGTTACATTTTGATTAAAGAAAATTCCAAAGATTTTTTTAAAGGATCAATCAACTCATTTTCCACCAAAAGCAAGGAAATGAACATAAAATTCCTATGATTTCTTTCCACCCAAGTCAAACACAAAAAAGGCCCAACACAAGATTCATCCAAAGGATCTCTTTGGTTTGCGTGAAAGGGGTTACCCATCACAGGAGGGGTTTAATCTTGTGTTTAATAAAAATGTAGAGATATTTATTTATAGAAATTTTCTATGTGCTTAATCAAAATGTAGGGATATTTTTAACATTAGCCTCTTTTCATTTTTGTCATCGAAAATTTCGTGTTTCTTGTTGAAAAAAAGGCAGGGACCTTTTGGGAAGACCATCTCATCCTTGTGGGAGCCACCATTTTGTTCCAAAGTTCCATTTTTTTGATATGATGTTATAAGTTTATGCTATTTTCCGAGCGAGAGATTTATGAGACGAGAATTAGAAACTTGTAGCTTTGTTTTCATTTTGTTGGATATGAGGTGGAGTTTTGTAAAGTAAGGTTGACATGGTTGTATTGTCCCTTGTATTTGTTAAGATACTTCCTAACAAGAATCAATATCTAAAATATATTGAGAATTGAAGAAGAAAGTACAAGATAATCCGTGTATAAAGGAACTTGATAACTCCACGAAATAGTCTACCCTTCACTCACTCACCCACTCAATATTTATACAACACCCAGTAACCAACCTTCCATCTAATGACCATTATACCCTTTAATACTAACATACTAAAATTCATATCCAGGTACCTAACAATATTCTTTCATCATTATTATTGTTATTTTTAAATAGAAAGTTATCTTTTCATTTAAAAATGGAATCCCGGTGCACATAATCTTTTCATATGCTCATTAGCTGCATTTAAGCTTTTTTGGCAAATTACAGTTGATTGACCAACTTTTCCTTCGCCTTGTTTGTCACCAGTGTATGAGACATGCAAGCTGGGAACTCATACCCCGCATAATTTAGGGAATCAAATGGACACAGAGTCTGGGAAGTGGTTGTCTTCAGGTTTTGTTCTACTTGATTGCCCCCAATCAATGAAAATTGATAGCAGCAGTGCTTCAATTGTTGGTTCAATTAGTGACTATTTGCTCTCTCTCTCAAATGGATGGGACTTGACAAGCTATCTTAGATCTCTTTCAAAAGCTTTGAAAGCTTTGAAACTCTCTCCATCCATGTCAGCTAATCCAAAAGAAGGAAGTAATGGTTCTTGCATGGTAAGACCTTTGAATATTTTCCAATTTCTATTCCCTCAATGTATATTATTTCCACCATGCTTGGCTCACCTACAATTTTTTTCCTACCTTAGGTACTTTATGTGATATGCCCTTTTCCTGATCCCCTGGAAGTATTGCAAACTGTTGTTGAATCTTCTATTGCTGTCGGTTCTGTCATGCTCCAGTCAGATAGAGATAGGAGAACAATATTGTGTAGTCAGGTTGCAAAGTCGTTAAGCTGCTCAGCAGCTGTTGATGAGTCATCAGCATCAAACGTTTTAGTTCTTCAAGGGTTTACTCTACCTAAATTGGTATTGCAGATTGTGACAGTTGATGTGATTTTCAGAGTGAGTAGTCCATCCGTAAATGAACTTGTCATTCTTAAGGAGACAGCTTTTACTATTTATAACAAGGCTCGTCGAATATCACGGGGGACCTCAAATGACGCTGTCCAGTCATCATCAATATCTAGTAGATCTCATTCAGTTCTATCATCAATGTCACCTTCTATTCCAGGGATGTGGAAGGACTGTGTTGGTCCTAGAATGACTGGGCATTCACTCCCACGAGAGGGTGAAATTGATGGTACCCTGAGGTCTGTTGAAACTGGGATAATTCCTGGCAATCAAGGGCTGGAACATTAA

mRNA sequence

ATAAATTATTGCGTCATTTGCCCCGATATTGATCCTCTTGCAACAGCTGCTGCTGATTTTTTCCAGCAACTAGGAACGGTGTATGAGACATGCAAGCTGGGAACTCATACCCCGCATAATTTAGGGAATCAAATGGACACAGAGTCTGGGAAGTGGTTGTCTTCAGGTTTTGTTCTACTTGATTGCCCCCAATCAATGAAAATTGATAGCAGCAGTGCTTCAATTGTTGGTTCAATTAGTGACTATTTGCTCTCTCTCTCAAATGGATGGGACTTGACAAGCTATCTTAGATCTCTTTCAAAAGCTTTGAAAGCTTTGAAACTCTCTCCATCCATGTCAGCTAATCCAAAAGAAGGAAGTAATGGTTCTTGCATGGTACTTTATGTGATATGCCCTTTTCCTGATCCCCTGGAAGTATTGCAAACTGTTGTTGAATCTTCTATTGCTGTCGGTTCTGTCATGCTCCAGTCAGATAGAGATAGGAGAACAATATTGTGTAGTCAGGTTGCAAAGTCGTTAAGCTGCTCAGCAGCTGTTGATGAGTCATCAGCATCAAACGTTTTAGTTCTTCAAGGGTTTACTCTACCTAAATTGGTATTGCAGATTGTGACAGTTGATGTGATTTTCAGAGTGAGTAGTCCATCCGTAAATGAACTTGTCATTCTTAAGGAGACAGCTTTTACTATTTATAACAAGGCTCGTCGAATATCACGGGGGACCTCAAATGACGCTGTCCAGTCATCATCAATATCTAGTAGATCTCATTCAGTTCTATCATCAATGTCACCTTCTATTCCAGGGATGTGGAAGGACTGTGTTGGTCCTAGAATGACTGGGCATTCACTCCCACGAGAGGGTGAAATTGATGGTACCCTGAGGTCTGTTGAAACTGGGATAATTCCTGGCAATCAAGGGCTGGAACATTAA

Coding sequence (CDS)

ATGGACACAGAGTCTGGGAAGTGGTTGTCTTCAGGTTTTGTTCTACTTGATTGCCCCCAATCAATGAAAATTGATAGCAGCAGTGCTTCAATTGTTGGTTCAATTAGTGACTATTTGCTCTCTCTCTCAAATGGATGGGACTTGACAAGCTATCTTAGATCTCTTTCAAAAGCTTTGAAAGCTTTGAAACTCTCTCCATCCATGTCAGCTAATCCAAAAGAAGGAAGTAATGGTTCTTGCATGGTACTTTATGTGATATGCCCTTTTCCTGATCCCCTGGAAGTATTGCAAACTGTTGTTGAATCTTCTATTGCTGTCGGTTCTGTCATGCTCCAGTCAGATAGAGATAGGAGAACAATATTGTGTAGTCAGGTTGCAAAGTCGTTAAGCTGCTCAGCAGCTGTTGATGAGTCATCAGCATCAAACGTTTTAGTTCTTCAAGGGTTTACTCTACCTAAATTGGTATTGCAGATTGTGACAGTTGATGTGATTTTCAGAGTGAGTAGTCCATCCGTAAATGAACTTGTCATTCTTAAGGAGACAGCTTTTACTATTTATAACAAGGCTCGTCGAATATCACGGGGGACCTCAAATGACGCTGTCCAGTCATCATCAATATCTAGTAGATCTCATTCAGTTCTATCATCAATGTCACCTTCTATTCCAGGGATGTGGAAGGACTGTGTTGGTCCTAGAATGACTGGGCATTCACTCCCACGAGAGGGTGAAATTGATGGTACCCTGAGGTCTGTTGAAACTGGGATAATTCCTGGCAATCAAGGGCTGGAACATTAA

Protein sequence

MDTESGKWLSSGFVLLDCPQSMKIDSSSASIVGSISDYLLSLSNGWDLTSYLRSLSKALKALKLSPSMSANPKEGSNGSCMVLYVICPFPDPLEVLQTVVESSIAVGSVMLQSDRDRRTILCSQVAKSLSCSAAVDESSASNVLVLQGFTLPKLVLQIVTVDVIFRVSSPSVNELVILKETAFTIYNKARRISRGTSNDAVQSSSISSRSHSVLSSMSPSIPGMWKDCVGPRMTGHSLPREGEIDGTLRSVETGIIPGNQGLEH*

Homology

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BLAST of MELO3C015582T1 vs. Swiss-Prot
Match: MED13_ARATH (Mediator of RNA polymerase II transcription subunit 13 OS=Arabidopsis thaliana GN=MED13 PE=1 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 6.7e-86
Identity = 162/250 (64.80%), Postives = 204/250 (81.60%), Query Frame = 1


Query: 1    MDTESGKWLSSGFVLLDCPQSMKIDSSSASIVGSISDYLLSLSNGWDLTSYLRSLSKALK 60
            M+ + G+  SSGFVLLDCPQSMKI+S++ S++GS+SDY LSLSNGW++ SYL+SLSKALK
Sbjct: 1184 MEKDVGRLSSSGFVLLDCPQSMKIESNNTSLLGSLSDYFLSLSNGWNVNSYLKSLSKALK 1243

Query: 61   ALKLSPSMSANPKEGSNGSCMVLYVICPFPDPLEVLQTVVESSIAVGSVMLQSDRDRRTI 120
             LKL   +  N KEGS   C+V+Y++CPFPDP  VL+T+VESSIA+GSV +QSDRDRR+I
Sbjct: 1244 GLKLGSGLYTNQKEGSGSPCVVVYIVCPFPDPSAVLRTIVESSIALGSV-IQSDRDRRSI 1303

Query: 121  LCSQVAKSLSCSAAVDESSASNVLVLQGFTLPKLVLQIVTVDVIFRVSSPSVNELVILKE 180
            L SQVA++ S S AVDE+S S++ VL GF++PKLVLQ+V+VD IFR++SPS NELVILK+
Sbjct: 1304 LNSQVARAFSSSTAVDEASISHIPVLSGFSVPKLVLQVVSVDSIFRITSPSFNELVILKD 1363

Query: 181  TAFTIYNKARRISRGTSNDAVQSSSISSRSHSVLSSMSPSIPGMWKDCVGPRMTGHSLPR 240
            TAF++YNKARRISRG  NDA  SSS+ SRS S L+ M+ SI G+WKDC G RMTG + PR
Sbjct: 1364 TAFSVYNKARRISRGMPNDAFFSSSLPSRSSSALTPMN-SISGIWKDCGGSRMTGSTHPR 1423

Query: 241  EGEIDGTLRS 251
            +GEID +LR+
Sbjct: 1424 DGEIDVSLRT 1431

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BLAST of MELO3C015582T1 vs. TrEMBL
Match: A0A0A0M2D5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G599542 PE=4 SV=1)

HSP 1 Score: 480.7 bits (1236), Expect = 1.1e-132
Identity = 247/250 (98.80%), Postives = 249/250 (99.60%), Query Frame = 1


Query: 1   MDTESGKWLSSGFVLLDCPQSMKIDSSSASIVGSISDYLLSLSNGWDLTSYLRSLSKALK 60
           MDTESGKWLSSGFVLLDCPQSMKIDSSSASIVGSISDYLLSLSNGWDLTSYLRSLSKALK
Sbjct: 725 MDTESGKWLSSGFVLLDCPQSMKIDSSSASIVGSISDYLLSLSNGWDLTSYLRSLSKALK 784

Query: 61  ALKLSPSMSANPKEGSNGSCMVLYVICPFPDPLEVLQTVVESSIAVGSVMLQSDRDRRTI 120
           ALKLSPSMSANPKEGSNGSCMVLYVICPFPDPLEVLQTVVESS+AVGSVMLQSDRDRRTI
Sbjct: 785 ALKLSPSMSANPKEGSNGSCMVLYVICPFPDPLEVLQTVVESSVAVGSVMLQSDRDRRTI 844

Query: 121 LCSQVAKSLSCSAAVDESSASNVLVLQGFTLPKLVLQIVTVDVIFRVSSPSVNELVILKE 180
           LCSQVAKSLSCSAAVDESSASNVLVLQGFTLPKLVLQIVTVDVIFRVSSPSVNELVILKE
Sbjct: 845 LCSQVAKSLSCSAAVDESSASNVLVLQGFTLPKLVLQIVTVDVIFRVSSPSVNELVILKE 904

Query: 181 TAFTIYNKARRISRGTSNDAVQSSSISSRSHSVLSSMSPSIPGMWKDCVGPRMTGHSLPR 240
           TAFTIYNKARRISRGTSNDA QSSS+SSRSHSVLSSMSPSIPGMWKDCVGPRMTGHSLPR
Sbjct: 905 TAFTIYNKARRISRGTSNDAAQSSSLSSRSHSVLSSMSPSIPGMWKDCVGPRMTGHSLPR 964

Query: 241 EGEIDGTLRS 251
           EGEIDGTLRS
Sbjct: 965 EGEIDGTLRS 974

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BLAST of MELO3C015582T1 vs. TrEMBL
Match: W9SJ85_9ROSA (Mediator of RNA polymerase II transcription subunit 13-like protein OS=Morus notabilis GN=L484_019113 PE=4 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 1.4e-101
Identity = 184/249 (73.90%), Postives = 220/249 (88.35%), Query Frame = 1


Query: 1    MDTESGKWLSSGFVLLDCPQSMKIDSSSASIVGSISDYLLSLSNGWDLTSYLRSLSKALK 60
            M+ +SGK LS GF+LLDCPQ+M+I+S +AS+VGSISDY LSLSNGWDLTSYL+SLSKALK
Sbjct: 942  MEVDSGKCLSPGFILLDCPQAMRIESGNASLVGSISDYFLSLSNGWDLTSYLKSLSKALK 1001

Query: 61   ALKLSPSMSANPKEGSNGSCMVLYVICPFPDPLEVLQTVVESSIAVGSVMLQSDRDRRTI 120
            ALKL   MS N +EGS+ SCMV+YV+CPFP+P  VLQTVVESS+AVGSV+ QSDR+RR++
Sbjct: 1002 ALKLGQCMSTNTREGSSSSCMVIYVVCPFPEPTAVLQTVVESSVAVGSVIFQSDRERRSV 1061

Query: 121  LCSQVAKSLSCSAAVDESSASNVLVLQGFTLPKLVLQIVTVDVIFRVSSPSVNELVILKE 180
            L SQVAK+LSCSA+VDE+S SNVLVL GF++PKLVLQIVTVD IFRV+SPS++ELVILKE
Sbjct: 1062 LHSQVAKALSCSASVDEASISNVLVLSGFSIPKLVLQIVTVDAIFRVTSPSLSELVILKE 1121

Query: 181  TAFTIYNKARRISRGTSNDAVQSSSISSRSHSVLSSMSPSIPGMWKDCVGPRMTGHSLPR 240
             AFT+YNKARR+ RG+SNDAV SSS+S RSHSV++ M    PGMWKDC+GPR+ GHSLPR
Sbjct: 1122 IAFTVYNKARRMLRGSSNDAVHSSSLSGRSHSVMTQMPSPTPGMWKDCIGPRIAGHSLPR 1181

Query: 241  EGEIDGTLR 250
            EGEID +LR
Sbjct: 1182 EGEIDSSLR 1190

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BLAST of MELO3C015582T1 vs. TrEMBL
Match: B9SBR0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0344660 PE=4 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 3.4e-97
Identity = 181/250 (72.40%), Postives = 216/250 (86.40%), Query Frame = 1


Query: 1   MDTESGKWLSSGFVLLDCPQSMKIDSSSASIVGSISDYLLSLSNGWDLTSYLRSLSKALK 60
           M+ ++GK   SGFVLLDCPQSMKI+SS+ S+VGSISDY LSLSNGWD+TSYL+SLSKA+K
Sbjct: 92  MEIDTGKLSYSGFVLLDCPQSMKIESSNTSLVGSISDYFLSLSNGWDMTSYLKSLSKAVK 151

Query: 61  ALKLSPSMSANPKEGSNGSCMVLYVICPFPDPLEVLQTVVESSIAVGSVMLQSDRDRRTI 120
           ALK+ P +S NPKEG+ G CMV+YV+CPFP+P+ VLQTV+ESS+AVGS  L SDR+RR  
Sbjct: 152 ALKIGPCLSTNPKEGNTGPCMVIYVVCPFPEPIAVLQTVIESSVAVGSTFLSSDRERRQA 211

Query: 121 LCSQVAKSLSCSAAVDESSASNVLVLQGFTLPKLVLQIVTVDVIFRVSSPSVNELVILKE 180
           L SQV K+LSCSA VDE+S SNVLVL GF++PKLVLQIVTVD IFRV+SP++NELVILKE
Sbjct: 212 LLSQVGKALSCSAVVDEASPSNVLVLAGFSVPKLVLQIVTVDAIFRVASPALNELVILKE 271

Query: 181 TAFTIYNKARRISRGTSNDAVQSSSISSRSHSVLSSMSPSIPGMWKDCVGPRMTGHSLPR 240
           TAFT+YNKARRIS+G SND VQSS++S RSHSV+  M+ SIP MWKDCVGPR+ G +LPR
Sbjct: 272 TAFTVYNKARRISKGFSND-VQSSTLSGRSHSVIPQMN-SIPAMWKDCVGPRLGGPTLPR 331

Query: 241 EGEIDGTLRS 251
           EGE+D  LRS
Sbjct: 332 EGEMDAGLRS 339

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BLAST of MELO3C015582T1 vs. TrEMBL
Match: M5VYG0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000082mg PE=4 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 3.4e-97
Identity = 180/250 (72.00%), Postives = 219/250 (87.60%), Query Frame = 1


Query: 1    MDTESGKWLSSGFVLLDCPQSMKIDSSSASIVGSISDYLLSLSNGWDLTSYLRSLSKALK 60
            M+ +SG+  SSGFVLLDCPQ+MKI+S +AS+VGS+SDY LS+SNGWDLTSYL+SLSKALK
Sbjct: 1122 MEVDSGRRPSSGFVLLDCPQAMKIESRNASLVGSLSDYFLSISNGWDLTSYLKSLSKALK 1181

Query: 61   ALKLSPSMSANPKEGSNGSCMVLYVICPFPDPLEVLQTVVESSIAVGSVMLQSDRDRRTI 120
            ALKL   +S N KEGS+G   V+YV+CPFP+P+ +LQTV+ESS+A+GSV+ QSDR+RR+I
Sbjct: 1182 ALKLGHCLSTNAKEGSSGPSTVIYVVCPFPEPIAILQTVIESSVAIGSVIFQSDRERRSI 1241

Query: 121  LCSQVAKSLSCSAAVDESSASNVLVLQGFTLPKLVLQIVTVDVIFRVSSPSVNELVILKE 180
            L SQV+K+LS SA VDE+S SN+LVL GF +PKLVLQIVTVD IF+V+SPS+NELVILKE
Sbjct: 1242 LYSQVSKALSYSATVDEASISNILVLSGFGIPKLVLQIVTVDAIFKVTSPSLNELVILKE 1301

Query: 181  TAFTIYNKARRISRGTSNDAVQSSSISSRSHSVLSSMSPSIPGMWKDCVGPRMTGHSLPR 240
            TAFT+YNKARRISRG S+DAVQ SS+SSRSH+VLS MS   PG WKDC GPR+TGHSLPR
Sbjct: 1302 TAFTVYNKARRISRGASSDAVQ-SSLSSRSHTVLSQMSSPTPGTWKDCGGPRITGHSLPR 1361

Query: 241  EGEIDGTLRS 251
            EGE+D +LR+
Sbjct: 1362 EGEMDASLRT 1370

[Close]

BLAST of MELO3C015582T1 vs. TrEMBL
Match: A0A061EWA0_THECC (RNA polymerase II transcription mediators isoform 3 OS=Theobroma cacao GN=TCM_024228 PE=4 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 1.3e-96
Identity = 182/249 (73.09%), Postives = 215/249 (86.35%), Query Frame = 1


Query: 1    MDTESGKWLSSGFVLLDCPQSMKIDSSSASIVGSISDYLLSLSNGWDLTSYLRSLSKALK 60
            M+ +SGKW SSGFVLLDCPQSMKI+SS+AS++GSISDY LSLSNGWDL  YL+SLSKALK
Sbjct: 832  MEMDSGKWSSSGFVLLDCPQSMKIESSNASLLGSISDYFLSLSNGWDLACYLKSLSKALK 891

Query: 61   ALKLSPSMSANPKEGSNGSCMVLYVICPFPDPLEVLQTVVESSIAVGSVMLQSDRDRRTI 120
            ALKLS  +S N KEG +G CMV+YV+CPFP+P  VL+TVVESSIA+GS++L SDR+RR++
Sbjct: 892  ALKLSQFLSTNQKEGISGPCMVIYVVCPFPEPTAVLKTVVESSIAIGSIILPSDRERRSV 951

Query: 121  LCSQVAKSLSCSAAVDESSASNVLVLQGFTLPKLVLQIVTVDVIFRVSSPSVNELVILKE 180
            L SQV K+LS SAA DE+S SN+ V+ GF++PKLVLQIVTVD IFRV+SP  NELVILKE
Sbjct: 952  LYSQVGKALSSSAAADEASISNIPVVSGFSVPKLVLQIVTVDAIFRVTSPPFNELVILKE 1011

Query: 181  TAFTIYNKARRISRGTSNDAVQSSSISSRSHSVLSSMSPSIPGMWKDCVGPRMTGHSLPR 240
            TAFTIYNKARRISRG++ND   SSS+SSR HSVL+ M+ SIPGMWKDCVG R+ G SLPR
Sbjct: 1012 TAFTIYNKARRISRGSTNDVSLSSSLSSRPHSVLTPMT-SIPGMWKDCVGSRIPGSSLPR 1071

Query: 241  EGEIDGTLR 250
            EGEID +LR
Sbjct: 1072 EGEIDSSLR 1079

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BLAST of MELO3C015582T1 vs. TAIR10
Match: AT1G55325.2 (AT1G55325.2 RNA polymerase II transcription mediators)

HSP 1 Score: 318.5 bits (815), Expect = 3.8e-87
Identity = 162/250 (64.80%), Postives = 204/250 (81.60%), Query Frame = 1


Query: 1    MDTESGKWLSSGFVLLDCPQSMKIDSSSASIVGSISDYLLSLSNGWDLTSYLRSLSKALK 60
            M+ + G+  SSGFVLLDCPQSMKI+S++ S++GS+SDY LSLSNGW++ SYL+SLSKALK
Sbjct: 1140 MEKDVGRLSSSGFVLLDCPQSMKIESNNTSLLGSLSDYFLSLSNGWNVNSYLKSLSKALK 1199

Query: 61   ALKLSPSMSANPKEGSNGSCMVLYVICPFPDPLEVLQTVVESSIAVGSVMLQSDRDRRTI 120
             LKL   +  N KEGS   C+V+Y++CPFPDP  VL+T+VESSIA+GSV +QSDRDRR+I
Sbjct: 1200 GLKLGSGLYTNQKEGSGSPCVVVYIVCPFPDPSAVLRTIVESSIALGSV-IQSDRDRRSI 1259

Query: 121  LCSQVAKSLSCSAAVDESSASNVLVLQGFTLPKLVLQIVTVDVIFRVSSPSVNELVILKE 180
            L SQVA++ S S AVDE+S S++ VL GF++PKLVLQ+V+VD IFR++SPS NELVILK+
Sbjct: 1260 LNSQVARAFSSSTAVDEASISHIPVLSGFSVPKLVLQVVSVDSIFRITSPSFNELVILKD 1319

Query: 181  TAFTIYNKARRISRGTSNDAVQSSSISSRSHSVLSSMSPSIPGMWKDCVGPRMTGHSLPR 240
            TAF++YNKARRISRG  NDA  SSS+ SRS S L+ M+ SI G+WKDC G RMTG + PR
Sbjct: 1320 TAFSVYNKARRISRGMPNDAFFSSSLPSRSSSALTPMN-SISGIWKDCGGSRMTGSTHPR 1379

Query: 241  EGEIDGTLRS 251
            +GEID +LR+
Sbjct: 1380 DGEIDVSLRT 1387

[Close]

BLAST of MELO3C015582T1 vs. NCBI nr
Match: gi|659100287|ref|XP_008451019.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 13 [Cucumis melo])

HSP 1 Score: 483.4 bits (1243), Expect = 2.5e-133
Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 1


Query: 1    MDTESGKWLSSGFVLLDCPQSMKIDSSSASIVGSISDYLLSLSNGWDLTSYLRSLSKALK 60
            MDTESGKWLSSGFVLLDCPQSMKIDSSSASIVGSISDYLLSLSNGWDLTSYLRSLSKALK
Sbjct: 1177 MDTESGKWLSSGFVLLDCPQSMKIDSSSASIVGSISDYLLSLSNGWDLTSYLRSLSKALK 1236

Query: 61   ALKLSPSMSANPKEGSNGSCMVLYVICPFPDPLEVLQTVVESSIAVGSVMLQSDRDRRTI 120
            ALKLSPSMSANPKEGSNGSCMVLYVICPFPDPLEVLQTVVESSIAVGSVMLQSDRDRRTI
Sbjct: 1237 ALKLSPSMSANPKEGSNGSCMVLYVICPFPDPLEVLQTVVESSIAVGSVMLQSDRDRRTI 1296

Query: 121  LCSQVAKSLSCSAAVDESSASNVLVLQGFTLPKLVLQIVTVDVIFRVSSPSVNELVILKE 180
            LCSQVAKSLSCSAAVDESSASNVLVLQGFTLPKLVLQIVTVDVIFRVSSPSVNELVILKE
Sbjct: 1297 LCSQVAKSLSCSAAVDESSASNVLVLQGFTLPKLVLQIVTVDVIFRVSSPSVNELVILKE 1356

Query: 181  TAFTIYNKARRISRGTSNDAVQSSSISSRSHSVLSSMSPSIPGMWKDCVGPRMTGHSLPR 240
            TAFTIYNKARRISRGTSNDAVQSSSISSRSHSVLSSMSPSIPGMWKDCVGPRMTGHSLPR
Sbjct: 1357 TAFTIYNKARRISRGTSNDAVQSSSISSRSHSVLSSMSPSIPGMWKDCVGPRMTGHSLPR 1416

Query: 241  EGEIDGTLRS 251
            EGEIDGTLRS
Sbjct: 1417 EGEIDGTLRS 1426

[Close]

BLAST of MELO3C015582T1 vs. NCBI nr
Match: gi|778663325|ref|XP_011660061.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 13 [Cucumis sativus])

HSP 1 Score: 480.7 bits (1236), Expect = 1.6e-132
Identity = 247/250 (98.80%), Postives = 249/250 (99.60%), Query Frame = 1


Query: 1    MDTESGKWLSSGFVLLDCPQSMKIDSSSASIVGSISDYLLSLSNGWDLTSYLRSLSKALK 60
            MDTESGKWLSSGFVLLDCPQSMKIDSSSASIVGSISDYLLSLSNGWDLTSYLRSLSKALK
Sbjct: 1178 MDTESGKWLSSGFVLLDCPQSMKIDSSSASIVGSISDYLLSLSNGWDLTSYLRSLSKALK 1237

Query: 61   ALKLSPSMSANPKEGSNGSCMVLYVICPFPDPLEVLQTVVESSIAVGSVMLQSDRDRRTI 120
            ALKLSPSMSANPKEGSNGSCMVLYVICPFPDPLEVLQTVVESS+AVGSVMLQSDRDRRTI
Sbjct: 1238 ALKLSPSMSANPKEGSNGSCMVLYVICPFPDPLEVLQTVVESSVAVGSVMLQSDRDRRTI 1297

Query: 121  LCSQVAKSLSCSAAVDESSASNVLVLQGFTLPKLVLQIVTVDVIFRVSSPSVNELVILKE 180
            LCSQVAKSLSCSAAVDESSASNVLVLQGFTLPKLVLQIVTVDVIFRVSSPSVNELVILKE
Sbjct: 1298 LCSQVAKSLSCSAAVDESSASNVLVLQGFTLPKLVLQIVTVDVIFRVSSPSVNELVILKE 1357

Query: 181  TAFTIYNKARRISRGTSNDAVQSSSISSRSHSVLSSMSPSIPGMWKDCVGPRMTGHSLPR 240
            TAFTIYNKARRISRGTSNDA QSSS+SSRSHSVLSSMSPSIPGMWKDCVGPRMTGHSLPR
Sbjct: 1358 TAFTIYNKARRISRGTSNDAAQSSSLSSRSHSVLSSMSPSIPGMWKDCVGPRMTGHSLPR 1417

Query: 241  EGEIDGTLRS 251
            EGEIDGTLRS
Sbjct: 1418 EGEIDGTLRS 1427

[Close]

BLAST of MELO3C015582T1 vs. NCBI nr
Match: gi|700211265|gb|KGN66361.1| (hypothetical protein Csa_1G599542 [Cucumis sativus])

HSP 1 Score: 480.7 bits (1236), Expect = 1.6e-132
Identity = 247/250 (98.80%), Postives = 249/250 (99.60%), Query Frame = 1


Query: 1   MDTESGKWLSSGFVLLDCPQSMKIDSSSASIVGSISDYLLSLSNGWDLTSYLRSLSKALK 60
           MDTESGKWLSSGFVLLDCPQSMKIDSSSASIVGSISDYLLSLSNGWDLTSYLRSLSKALK
Sbjct: 725 MDTESGKWLSSGFVLLDCPQSMKIDSSSASIVGSISDYLLSLSNGWDLTSYLRSLSKALK 784

Query: 61  ALKLSPSMSANPKEGSNGSCMVLYVICPFPDPLEVLQTVVESSIAVGSVMLQSDRDRRTI 120
           ALKLSPSMSANPKEGSNGSCMVLYVICPFPDPLEVLQTVVESS+AVGSVMLQSDRDRRTI
Sbjct: 785 ALKLSPSMSANPKEGSNGSCMVLYVICPFPDPLEVLQTVVESSVAVGSVMLQSDRDRRTI 844

Query: 121 LCSQVAKSLSCSAAVDESSASNVLVLQGFTLPKLVLQIVTVDVIFRVSSPSVNELVILKE 180
           LCSQVAKSLSCSAAVDESSASNVLVLQGFTLPKLVLQIVTVDVIFRVSSPSVNELVILKE
Sbjct: 845 LCSQVAKSLSCSAAVDESSASNVLVLQGFTLPKLVLQIVTVDVIFRVSSPSVNELVILKE 904

Query: 181 TAFTIYNKARRISRGTSNDAVQSSSISSRSHSVLSSMSPSIPGMWKDCVGPRMTGHSLPR 240
           TAFTIYNKARRISRGTSNDA QSSS+SSRSHSVLSSMSPSIPGMWKDCVGPRMTGHSLPR
Sbjct: 905 TAFTIYNKARRISRGTSNDAAQSSSLSSRSHSVLSSMSPSIPGMWKDCVGPRMTGHSLPR 964

Query: 241 EGEIDGTLRS 251
           EGEIDGTLRS
Sbjct: 965 EGEIDGTLRS 974

[Close]

BLAST of MELO3C015582T1 vs. NCBI nr
Match: gi|703160937|ref|XP_010112661.1| (Mediator of RNA polymerase II transcription subunit 13-like protein [Morus notabilis])

HSP 1 Score: 377.5 bits (968), Expect = 1.9e-101
Identity = 184/249 (73.90%), Postives = 220/249 (88.35%), Query Frame = 1


Query: 1    MDTESGKWLSSGFVLLDCPQSMKIDSSSASIVGSISDYLLSLSNGWDLTSYLRSLSKALK 60
            M+ +SGK LS GF+LLDCPQ+M+I+S +AS+VGSISDY LSLSNGWDLTSYL+SLSKALK
Sbjct: 942  MEVDSGKCLSPGFILLDCPQAMRIESGNASLVGSISDYFLSLSNGWDLTSYLKSLSKALK 1001

Query: 61   ALKLSPSMSANPKEGSNGSCMVLYVICPFPDPLEVLQTVVESSIAVGSVMLQSDRDRRTI 120
            ALKL   MS N +EGS+ SCMV+YV+CPFP+P  VLQTVVESS+AVGSV+ QSDR+RR++
Sbjct: 1002 ALKLGQCMSTNTREGSSSSCMVIYVVCPFPEPTAVLQTVVESSVAVGSVIFQSDRERRSV 1061

Query: 121  LCSQVAKSLSCSAAVDESSASNVLVLQGFTLPKLVLQIVTVDVIFRVSSPSVNELVILKE 180
            L SQVAK+LSCSA+VDE+S SNVLVL GF++PKLVLQIVTVD IFRV+SPS++ELVILKE
Sbjct: 1062 LHSQVAKALSCSASVDEASISNVLVLSGFSIPKLVLQIVTVDAIFRVTSPSLSELVILKE 1121

Query: 181  TAFTIYNKARRISRGTSNDAVQSSSISSRSHSVLSSMSPSIPGMWKDCVGPRMTGHSLPR 240
             AFT+YNKARR+ RG+SNDAV SSS+S RSHSV++ M    PGMWKDC+GPR+ GHSLPR
Sbjct: 1122 IAFTVYNKARRMLRGSSNDAVHSSSLSGRSHSVMTQMPSPTPGMWKDCIGPRIAGHSLPR 1181

Query: 241  EGEIDGTLR 250
            EGEID +LR
Sbjct: 1182 EGEIDSSLR 1190

[Close]

BLAST of MELO3C015582T1 vs. NCBI nr
Match: gi|1009123963|ref|XP_015878819.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 13 isoform X4 [Ziziphus jujuba])

HSP 1 Score: 376.3 bits (965), Expect = 4.3e-101
Identity = 182/249 (73.09%), Postives = 222/249 (89.16%), Query Frame = 1


Query: 1    MDTESGKWLSSGFVLLDCPQSMKIDSSSASIVGSISDYLLSLSNGWDLTSYLRSLSKALK 60
            M+ +SGK  SSGFVLLDCPQ+M+I+S +AS+VGSISDY LSLSNGWDLTSYL+SLSKALK
Sbjct: 818  MEVDSGKLSSSGFVLLDCPQAMRIESGNASLVGSISDYFLSLSNGWDLTSYLKSLSKALK 877

Query: 61   ALKLSPSMSANPKEGSNGSCMVLYVICPFPDPLEVLQTVVESSIAVGSVMLQSDRDRRTI 120
            ALKL P +S N KEGS+G C+V+YV+CPFP+P  VLQTV+ESS+A+GSV+ QSDR+RR+I
Sbjct: 878  ALKLGPCLSTNAKEGSSGPCVVIYVVCPFPEPTAVLQTVIESSVAIGSVVFQSDRERRSI 937

Query: 121  LCSQVAKSLSCSAAVDESSASNVLVLQGFTLPKLVLQIVTVDVIFRVSSPSVNELVILKE 180
            L +QV K+LSCSAAVDE+S SNVL+L GF++PKLVLQ+VTVD IF+V+SPS+NEL ILKE
Sbjct: 938  LHNQVGKALSCSAAVDETSISNVLILSGFSVPKLVLQLVTVDAIFKVTSPSLNELAILKE 997

Query: 181  TAFTIYNKARRISRGTSNDAVQSSSISSRSHSVLSSMSPSIPGMWKDCVGPRMTGHSLPR 240
            TAFT+YNKARRI RG+SND +QSSS+S+RSH VL+ MS   PGMWKDC+GPR+TGHS+PR
Sbjct: 998  TAFTVYNKARRIPRGSSND-IQSSSLSNRSHLVLTQMSSPTPGMWKDCIGPRITGHSIPR 1057

Query: 241  EGEIDGTLR 250
            EGEID +LR
Sbjct: 1058 EGEIDSSLR 1065

The following BLAST results are available for this feature:

BLAST of MELO3C015582T1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MED13_ARATH	6.7e-86	64.80	Mediator of RNA polymerase II transcription subunit 13 OS=Arabidopsis thaliana G...	[more]

BLAST of MELO3C015582T1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M2D5_CUCSA	1.1e-132	98.80	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G599542 PE=4 SV=1	[more]
W9SJ85_9ROSA	1.4e-101	73.90	Mediator of RNA polymerase II transcription subunit 13-like protein OS=Morus not...	[more]
B9SBR0_RICCO	3.4e-97	72.40	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0344660 PE=4 SV=1	[more]
M5VYG0_PRUPE	3.4e-97	72.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000082mg PE=4 SV=1	[more]
A0A061EWA0_THECC	1.3e-96	73.09	RNA polymerase II transcription mediators isoform 3 OS=Theobroma cacao GN=TCM_02...	[more]

BLAST of MELO3C015582T1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G55325.2	3.8e-87	64.80	RNA polymerase II transcription mediators	[more]

BLAST of MELO3C015582T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659100287\|ref\|XP_008451019.1\|	2.5e-133	100.00	PREDICTED: mediator of RNA polymerase II transcription subunit 13 [Cucumis melo]	[more]
gi\|778663325\|ref\|XP_011660061.1\|	1.6e-132	98.80	PREDICTED: mediator of RNA polymerase II transcription subunit 13 [Cucumis sativ...	[more]
gi\|700211265\|gb\|KGN66361.1\|	1.6e-132	98.80	hypothetical protein Csa_1G599542 [Cucumis sativus]	[more]
gi\|703160937\|ref\|XP_010112661.1\|	1.9e-101	73.90	Mediator of RNA polymerase II transcription subunit 13-like protein [Morus notab...	[more]
gi\|1009123963\|ref\|XP_015878819.1\|	4.3e-101	73.09	PREDICTED: mediator of RNA polymerase II transcription subunit 13 isoform X4 [Zi...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006544	glycine metabolic process
biological_process	GO:0006563	L-serine metabolic process
biological_process	GO:0006357	regulation of transcription from RNA polymerase II promoter
biological_process	GO:0006566	threonine metabolic process
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0004794	L-threonine ammonia-lyase activity
molecular_function	GO:0001104	RNA polymerase II transcription cofactor activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C015582	MELO3C015582	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C015582T1	MELO3C015582T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C015582T1.cds2	MELO3C015582T1.cds2	CDS
MELO3C015582T1.cds1	MELO3C015582T1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR10791	RAG1-ACTIVATING PROTEIN 1	coord: 1..161 score: 1.2
None	No IPR available	PANTHER	PTHR10791:SF60	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 13	coord: 1..161 score: 1.2