MELO3C015582 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C015582
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Mediator of RNA polymerase II transcription subunit 13-like protein
Location	chr2 : 3051009 .. 3053176 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAAATTATTGCGTCATTTGCCCCGATATTGATCCTCTTGCAACAGCTGCTGCTGATTTTTTCCAGCAACTAGGAACGGGTTAGTAACGATTTGTTATTTAATCAAATAAAATGGGTACTTCCAGAGGTCTACTATATAACTAATTCTGCATTTAGTCTCTTGATTAATCTTGTATTTTCCATTTGACTGTTTGAAAAGAAGTATTTTCCTACGGGAGACTGATCTTTAAGAAATGAATAAATACTGTTCTGATGTGGATAAAATTGCCACTGTTACATTTTGATTAAAGAAAATTCCAAAGATTTTTTTAAAGGATCAATCAACTCATTTTCCACCAAAAGCAAGGAAATGAACATAAAATTCCTATGATTTCTTTCCACCCAAGTCAAACACAAAAAAGGCCCAACACAAGATTCATCCAAAGGATCTCTTTGGTTTGCGTGAAAGGGGTTACCCATCACAGGAGGGGTTTAATCTTGTGTTTAATAAAAATGTAGAGATATTTATTTATAGAAATTTTCTATGTGCTTAATCAAAATGTAGGGATATTTTTAACATTAGCCTCTTTTCATTTTTGTCATCGAAAATTTCGTGTTTCTTGTTGAAAAAAAGGCAGGGACCTTTTGGGAAGACCATCTCATCCTTGTGGGAGCCACCATTTTGTTCCAAAGTTCCATTTTTTTGATATGATGTTATAAGTTTATGCTATTTTCCGAGCGAGAGATTTATGAGACGAGAATTAGAAACTTGTAGCTTTGTTTTCATTTTGTTGGATATGAGGTGGAGTTTTGTAAAGTAAGGTTGACATGGTTGTATTGTCCCTTGTATTTGTTAAGATACTTCCTAACAAGAATCAATATCTAAAATATATTGAGAATTGAAGAAGAAAGTACAAGATAATCCGTGTATAAAGGAACTTGATAACTCCACGAAATAGTCTACCCTTCACTCACTCACCCACTCAATATTTATACAACACCCAGTAACCAACCTTCCATCTAATGACCATTATACCCTTTAATACTAACATACTAAAATTCATATCCAGGTACCTAACAATATTCTTTCATCATTATTATTGTTATTTTTAAATAGAAAGTTATCTTTTCATTTAAAAATGGAATCCCGGTGCACATAATCTTTTCATATGCTCATTAGCTGCATTTAAGCTTTTTTGGCAAATTACAGTTGATTGACCAACTTTTCCTTCGCCTTGTTTGTCACCAGTGTATGAGACATGCAAGCTGGGAACTCATACCCCGCATAATTTAGGGAATCAAATGGACACAGAGTCTGGGAAGTGGTTGTCTTCAGGTTTTGTTCTACTTGATTGCCCCCAATCAATGAAAATTGATAGCAGCAGTGCTTCAATTGTTGGTTCAATTAGTGACTATTTGCTCTCTCTCTCAAATGGATGGGACTTGACAAGCTATCTTAGATCTCTTTCAAAAGCTTTGAAAGCTTTGAAACTCTCTCCATCCATGTCAGCTAATCCAAAAGAAGGAAGTAATGGTTCTTGCATGGTAAGACCTTTGAATATTTTCCAATTTCTATTCCCTCAATGTATATTATTTCCACCATGCTTGGCTCACCTACAATTTTTTTCCTACCTTAGGTACTTTATGTGATATGCCCTTTTCCTGATCCCCTGGAAGTATTGCAAACTGTTGTTGAATCTTCTATTGCTGTCGGTTCTGTCATGCTCCAGTCAGATAGAGATAGGAGAACAATATTGTGTAGTCAGGTTGCAAAGTCGTTAAGCTGCTCAGCAGCTGTTGATGAGTCATCAGCATCAAACGTTTTAGTTCTTCAAGGGTTTACTCTACCTAAATTGGTATTGCAGATTGTGACAGTTGATGTGATTTTCAGAGTGAGTAGTCCATCCGTAAATGAACTTGTCATTCTTAAGGAGACAGCTTTTACTATTTATAACAAGGCTCGTCGAATATCACGGGGGACCTCAAATGACGCTGTCCAGTCATCATCAATATCTAGTAGATCTCATTCAGTTCTATCATCAATGTCACCTTCTATTCCAGGGATGTGGAAGGACTGTGTTGGTCCTAGAATGACTGGGCATTCACTCCCACGAGAGGGTGAAATTGATGGTACCCTGAGGTCTGTTGAAACTGGGATAATTCCTGGCAATCAAGGGCTGGAACATTAA

mRNA sequence

ATAAATTATTGCGTCATTTGCCCCGATATTGATCCTCTTGCAACAGCTGCTGCTGATTTTTTCCAGCAACTAGGAACGGTGTATGAGACATGCAAGCTGGGAACTCATACCCCGCATAATTTAGGGAATCAAATGGACACAGAGTCTGGGAAGTGGTTGTCTTCAGGTTTTGTTCTACTTGATTGCCCCCAATCAATGAAAATTGATAGCAGCAGTGCTTCAATTGTTGGTTCAATTAGTGACTATTTGCTCTCTCTCTCAAATGGATGGGACTTGACAAGCTATCTTAGATCTCTTTCAAAAGCTTTGAAAGCTTTGAAACTCTCTCCATCCATGTCAGCTAATCCAAAAGAAGGAAGTAATGGTTCTTGCATGGTACTTTATGTGATATGCCCTTTTCCTGATCCCCTGGAAGTATTGCAAACTGTTGTTGAATCTTCTATTGCTGTCGGTTCTGTCATGCTCCAGTCAGATAGAGATAGGAGAACAATATTGTGTAGTCAGGTTGCAAAGTCGTTAAGCTGCTCAGCAGCTGTTGATGAGTCATCAGCATCAAACGTTTTAGTTCTTCAAGGGTTTACTCTACCTAAATTGGTATTGCAGATTGTGACAGTTGATGTGATTTTCAGAGTGAGTAGTCCATCCGTAAATGAACTTGTCATTCTTAAGGAGACAGCTTTTACTATTTATAACAAGGCTCGTCGAATATCACGGGGGACCTCAAATGACGCTGTCCAGTCATCATCAATATCTAGTAGATCTCATTCAGTTCTATCATCAATGTCACCTTCTATTCCAGGGATGTGGAAGGACTGTGTTGGTCCTAGAATGACTGGGCATTCACTCCCACGAGAGGGTGAAATTGATGGTACCCTGAGGTCTGTTGAAACTGGGATAATTCCTGGCAATCAAGGGCTGGAACATTAA

Coding sequence (CDS)

ATGGACACAGAGTCTGGGAAGTGGTTGTCTTCAGGTTTTGTTCTACTTGATTGCCCCCAATCAATGAAAATTGATAGCAGCAGTGCTTCAATTGTTGGTTCAATTAGTGACTATTTGCTCTCTCTCTCAAATGGATGGGACTTGACAAGCTATCTTAGATCTCTTTCAAAAGCTTTGAAAGCTTTGAAACTCTCTCCATCCATGTCAGCTAATCCAAAAGAAGGAAGTAATGGTTCTTGCATGGTACTTTATGTGATATGCCCTTTTCCTGATCCCCTGGAAGTATTGCAAACTGTTGTTGAATCTTCTATTGCTGTCGGTTCTGTCATGCTCCAGTCAGATAGAGATAGGAGAACAATATTGTGTAGTCAGGTTGCAAAGTCGTTAAGCTGCTCAGCAGCTGTTGATGAGTCATCAGCATCAAACGTTTTAGTTCTTCAAGGGTTTACTCTACCTAAATTGGTATTGCAGATTGTGACAGTTGATGTGATTTTCAGAGTGAGTAGTCCATCCGTAAATGAACTTGTCATTCTTAAGGAGACAGCTTTTACTATTTATAACAAGGCTCGTCGAATATCACGGGGGACCTCAAATGACGCTGTCCAGTCATCATCAATATCTAGTAGATCTCATTCAGTTCTATCATCAATGTCACCTTCTATTCCAGGGATGTGGAAGGACTGTGTTGGTCCTAGAATGACTGGGCATTCACTCCCACGAGAGGGTGAAATTGATGGTACCCTGAGGTCTGTTGAAACTGGGATAATTCCTGGCAATCAAGGGCTGGAACATTAA

Protein sequence

MDTESGKWLSSGFVLLDCPQSMKIDSSSASIVGSISDYLLSLSNGWDLTSYLRSLSKALKALKLSPSMSANPKEGSNGSCMVLYVICPFPDPLEVLQTVVESSIAVGSVMLQSDRDRRTILCSQVAKSLSCSAAVDESSASNVLVLQGFTLPKLVLQIVTVDVIFRVSSPSVNELVILKETAFTIYNKARRISRGTSNDAVQSSSISSRSHSVLSSMSPSIPGMWKDCVGPRMTGHSLPREGEIDGTLRSVETGIIPGNQGLEH*

Homology

[Close]

BLAST of MELO3C015582 vs. Swiss-Prot
Match: MED13_ARATH (Mediator of RNA polymerase II transcription subunit 13 OS=Arabidopsis thaliana GN=MED13 PE=1 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 6.7e-86
Identity = 162/250 (64.80%), Postives = 204/250 (81.60%), Query Frame = 1


Query: 1    MDTESGKWLSSGFVLLDCPQSMKIDSSSASIVGSISDYLLSLSNGWDLTSYLRSLSKALK 60
            M+ + G+  SSGFVLLDCPQSMKI+S++ S++GS+SDY LSLSNGW++ SYL+SLSKALK
Sbjct: 1184 MEKDVGRLSSSGFVLLDCPQSMKIESNNTSLLGSLSDYFLSLSNGWNVNSYLKSLSKALK 1243

Query: 61   ALKLSPSMSANPKEGSNGSCMVLYVICPFPDPLEVLQTVVESSIAVGSVMLQSDRDRRTI 120
             LKL   +  N KEGS   C+V+Y++CPFPDP  VL+T+VESSIA+GSV +QSDRDRR+I
Sbjct: 1244 GLKLGSGLYTNQKEGSGSPCVVVYIVCPFPDPSAVLRTIVESSIALGSV-IQSDRDRRSI 1303

Query: 121  LCSQVAKSLSCSAAVDESSASNVLVLQGFTLPKLVLQIVTVDVIFRVSSPSVNELVILKE 180
            L SQVA++ S S AVDE+S S++ VL GF++PKLVLQ+V+VD IFR++SPS NELVILK+
Sbjct: 1304 LNSQVARAFSSSTAVDEASISHIPVLSGFSVPKLVLQVVSVDSIFRITSPSFNELVILKD 1363

Query: 181  TAFTIYNKARRISRGTSNDAVQSSSISSRSHSVLSSMSPSIPGMWKDCVGPRMTGHSLPR 240
            TAF++YNKARRISRG  NDA  SSS+ SRS S L+ M+ SI G+WKDC G RMTG + PR
Sbjct: 1364 TAFSVYNKARRISRGMPNDAFFSSSLPSRSSSALTPMN-SISGIWKDCGGSRMTGSTHPR 1423

Query: 241  EGEIDGTLRS 251
            +GEID +LR+
Sbjct: 1424 DGEIDVSLRT 1431

[Close]

BLAST of MELO3C015582 vs. TrEMBL
Match: A0A0A0M2D5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G599542 PE=4 SV=1)

HSP 1 Score: 480.7 bits (1236), Expect = 1.1e-132
Identity = 247/250 (98.80%), Postives = 249/250 (99.60%), Query Frame = 1


Query: 1   MDTESGKWLSSGFVLLDCPQSMKIDSSSASIVGSISDYLLSLSNGWDLTSYLRSLSKALK 60
           MDTESGKWLSSGFVLLDCPQSMKIDSSSASIVGSISDYLLSLSNGWDLTSYLRSLSKALK
Sbjct: 725 MDTESGKWLSSGFVLLDCPQSMKIDSSSASIVGSISDYLLSLSNGWDLTSYLRSLSKALK 784

Query: 61  ALKLSPSMSANPKEGSNGSCMVLYVICPFPDPLEVLQTVVESSIAVGSVMLQSDRDRRTI 120
           ALKLSPSMSANPKEGSNGSCMVLYVICPFPDPLEVLQTVVESS+AVGSVMLQSDRDRRTI
Sbjct: 785 ALKLSPSMSANPKEGSNGSCMVLYVICPFPDPLEVLQTVVESSVAVGSVMLQSDRDRRTI 844

Query: 121 LCSQVAKSLSCSAAVDESSASNVLVLQGFTLPKLVLQIVTVDVIFRVSSPSVNELVILKE 180
           LCSQVAKSLSCSAAVDESSASNVLVLQGFTLPKLVLQIVTVDVIFRVSSPSVNELVILKE
Sbjct: 845 LCSQVAKSLSCSAAVDESSASNVLVLQGFTLPKLVLQIVTVDVIFRVSSPSVNELVILKE 904

Query: 181 TAFTIYNKARRISRGTSNDAVQSSSISSRSHSVLSSMSPSIPGMWKDCVGPRMTGHSLPR 240
           TAFTIYNKARRISRGTSNDA QSSS+SSRSHSVLSSMSPSIPGMWKDCVGPRMTGHSLPR
Sbjct: 905 TAFTIYNKARRISRGTSNDAAQSSSLSSRSHSVLSSMSPSIPGMWKDCVGPRMTGHSLPR 964

Query: 241 EGEIDGTLRS 251
           EGEIDGTLRS
Sbjct: 965 EGEIDGTLRS 974

[Close]

BLAST of MELO3C015582 vs. TrEMBL
Match: W9SJ85_9ROSA (Mediator of RNA polymerase II transcription subunit 13-like protein OS=Morus notabilis GN=L484_019113 PE=4 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 1.4e-101
Identity = 184/249 (73.90%), Postives = 220/249 (88.35%), Query Frame = 1


Query: 1    MDTESGKWLSSGFVLLDCPQSMKIDSSSASIVGSISDYLLSLSNGWDLTSYLRSLSKALK 60
            M+ +SGK LS GF+LLDCPQ+M+I+S +AS+VGSISDY LSLSNGWDLTSYL+SLSKALK
Sbjct: 942  MEVDSGKCLSPGFILLDCPQAMRIESGNASLVGSISDYFLSLSNGWDLTSYLKSLSKALK 1001

Query: 61   ALKLSPSMSANPKEGSNGSCMVLYVICPFPDPLEVLQTVVESSIAVGSVMLQSDRDRRTI 120
            ALKL   MS N +EGS+ SCMV+YV+CPFP+P  VLQTVVESS+AVGSV+ QSDR+RR++
Sbjct: 1002 ALKLGQCMSTNTREGSSSSCMVIYVVCPFPEPTAVLQTVVESSVAVGSVIFQSDRERRSV 1061

Query: 121  LCSQVAKSLSCSAAVDESSASNVLVLQGFTLPKLVLQIVTVDVIFRVSSPSVNELVILKE 180
            L SQVAK+LSCSA+VDE+S SNVLVL GF++PKLVLQIVTVD IFRV+SPS++ELVILKE
Sbjct: 1062 LHSQVAKALSCSASVDEASISNVLVLSGFSIPKLVLQIVTVDAIFRVTSPSLSELVILKE 1121

Query: 181  TAFTIYNKARRISRGTSNDAVQSSSISSRSHSVLSSMSPSIPGMWKDCVGPRMTGHSLPR 240
             AFT+YNKARR+ RG+SNDAV SSS+S RSHSV++ M    PGMWKDC+GPR+ GHSLPR
Sbjct: 1122 IAFTVYNKARRMLRGSSNDAVHSSSLSGRSHSVMTQMPSPTPGMWKDCIGPRIAGHSLPR 1181

Query: 241  EGEIDGTLR 250
            EGEID +LR
Sbjct: 1182 EGEIDSSLR 1190

[Close]

BLAST of MELO3C015582 vs. TrEMBL
Match: B9SBR0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0344660 PE=4 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 3.4e-97
Identity = 181/250 (72.40%), Postives = 216/250 (86.40%), Query Frame = 1


Query: 1   MDTESGKWLSSGFVLLDCPQSMKIDSSSASIVGSISDYLLSLSNGWDLTSYLRSLSKALK 60
           M+ ++GK   SGFVLLDCPQSMKI+SS+ S+VGSISDY LSLSNGWD+TSYL+SLSKA+K
Sbjct: 92  MEIDTGKLSYSGFVLLDCPQSMKIESSNTSLVGSISDYFLSLSNGWDMTSYLKSLSKAVK 151

Query: 61  ALKLSPSMSANPKEGSNGSCMVLYVICPFPDPLEVLQTVVESSIAVGSVMLQSDRDRRTI 120
           ALK+ P +S NPKEG+ G CMV+YV+CPFP+P+ VLQTV+ESS+AVGS  L SDR+RR  
Sbjct: 152 ALKIGPCLSTNPKEGNTGPCMVIYVVCPFPEPIAVLQTVIESSVAVGSTFLSSDRERRQA 211

Query: 121 LCSQVAKSLSCSAAVDESSASNVLVLQGFTLPKLVLQIVTVDVIFRVSSPSVNELVILKE 180
           L SQV K+LSCSA VDE+S SNVLVL GF++PKLVLQIVTVD IFRV+SP++NELVILKE
Sbjct: 212 LLSQVGKALSCSAVVDEASPSNVLVLAGFSVPKLVLQIVTVDAIFRVASPALNELVILKE 271

Query: 181 TAFTIYNKARRISRGTSNDAVQSSSISSRSHSVLSSMSPSIPGMWKDCVGPRMTGHSLPR 240
           TAFT+YNKARRIS+G SND VQSS++S RSHSV+  M+ SIP MWKDCVGPR+ G +LPR
Sbjct: 272 TAFTVYNKARRISKGFSND-VQSSTLSGRSHSVIPQMN-SIPAMWKDCVGPRLGGPTLPR 331

Query: 241 EGEIDGTLRS 251
           EGE+D  LRS
Sbjct: 332 EGEMDAGLRS 339

[Close]

BLAST of MELO3C015582 vs. TrEMBL
Match: M5VYG0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000082mg PE=4 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 3.4e-97
Identity = 180/250 (72.00%), Postives = 219/250 (87.60%), Query Frame = 1


Query: 1    MDTESGKWLSSGFVLLDCPQSMKIDSSSASIVGSISDYLLSLSNGWDLTSYLRSLSKALK 60
            M+ +SG+  SSGFVLLDCPQ+MKI+S +AS+VGS+SDY LS+SNGWDLTSYL+SLSKALK
Sbjct: 1122 MEVDSGRRPSSGFVLLDCPQAMKIESRNASLVGSLSDYFLSISNGWDLTSYLKSLSKALK 1181

Query: 61   ALKLSPSMSANPKEGSNGSCMVLYVICPFPDPLEVLQTVVESSIAVGSVMLQSDRDRRTI 120
            ALKL   +S N KEGS+G   V+YV+CPFP+P+ +LQTV+ESS+A+GSV+ QSDR+RR+I
Sbjct: 1182 ALKLGHCLSTNAKEGSSGPSTVIYVVCPFPEPIAILQTVIESSVAIGSVIFQSDRERRSI 1241

Query: 121  LCSQVAKSLSCSAAVDESSASNVLVLQGFTLPKLVLQIVTVDVIFRVSSPSVNELVILKE 180
            L SQV+K+LS SA VDE+S SN+LVL GF +PKLVLQIVTVD IF+V+SPS+NELVILKE
Sbjct: 1242 LYSQVSKALSYSATVDEASISNILVLSGFGIPKLVLQIVTVDAIFKVTSPSLNELVILKE 1301

Query: 181  TAFTIYNKARRISRGTSNDAVQSSSISSRSHSVLSSMSPSIPGMWKDCVGPRMTGHSLPR 240
            TAFT+YNKARRISRG S+DAVQ SS+SSRSH+VLS MS   PG WKDC GPR+TGHSLPR
Sbjct: 1302 TAFTVYNKARRISRGASSDAVQ-SSLSSRSHTVLSQMSSPTPGTWKDCGGPRITGHSLPR 1361

Query: 241  EGEIDGTLRS 251
            EGE+D +LR+
Sbjct: 1362 EGEMDASLRT 1370

[Close]

BLAST of MELO3C015582 vs. TrEMBL
Match: A0A061EWA0_THECC (RNA polymerase II transcription mediators isoform 3 OS=Theobroma cacao GN=TCM_024228 PE=4 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 1.3e-96
Identity = 182/249 (73.09%), Postives = 215/249 (86.35%), Query Frame = 1


Query: 1    MDTESGKWLSSGFVLLDCPQSMKIDSSSASIVGSISDYLLSLSNGWDLTSYLRSLSKALK 60
            M+ +SGKW SSGFVLLDCPQSMKI+SS+AS++GSISDY LSLSNGWDL  YL+SLSKALK
Sbjct: 832  MEMDSGKWSSSGFVLLDCPQSMKIESSNASLLGSISDYFLSLSNGWDLACYLKSLSKALK 891

Query: 61   ALKLSPSMSANPKEGSNGSCMVLYVICPFPDPLEVLQTVVESSIAVGSVMLQSDRDRRTI 120
            ALKLS  +S N KEG +G CMV+YV+CPFP+P  VL+TVVESSIA+GS++L SDR+RR++
Sbjct: 892  ALKLSQFLSTNQKEGISGPCMVIYVVCPFPEPTAVLKTVVESSIAIGSIILPSDRERRSV 951

Query: 121  LCSQVAKSLSCSAAVDESSASNVLVLQGFTLPKLVLQIVTVDVIFRVSSPSVNELVILKE 180
            L SQV K+LS SAA DE+S SN+ V+ GF++PKLVLQIVTVD IFRV+SP  NELVILKE
Sbjct: 952  LYSQVGKALSSSAAADEASISNIPVVSGFSVPKLVLQIVTVDAIFRVTSPPFNELVILKE 1011

Query: 181  TAFTIYNKARRISRGTSNDAVQSSSISSRSHSVLSSMSPSIPGMWKDCVGPRMTGHSLPR 240
            TAFTIYNKARRISRG++ND   SSS+SSR HSVL+ M+ SIPGMWKDCVG R+ G SLPR
Sbjct: 1012 TAFTIYNKARRISRGSTNDVSLSSSLSSRPHSVLTPMT-SIPGMWKDCVGSRIPGSSLPR 1071

Query: 241  EGEIDGTLR 250
            EGEID +LR
Sbjct: 1072 EGEIDSSLR 1079

[Close]

BLAST of MELO3C015582 vs. TAIR10
Match: AT1G55325.2 (AT1G55325.2 RNA polymerase II transcription mediators)

HSP 1 Score: 318.5 bits (815), Expect = 3.8e-87
Identity = 162/250 (64.80%), Postives = 204/250 (81.60%), Query Frame = 1


Query: 1    MDTESGKWLSSGFVLLDCPQSMKIDSSSASIVGSISDYLLSLSNGWDLTSYLRSLSKALK 60
            M+ + G+  SSGFVLLDCPQSMKI+S++ S++GS+SDY LSLSNGW++ SYL+SLSKALK
Sbjct: 1140 MEKDVGRLSSSGFVLLDCPQSMKIESNNTSLLGSLSDYFLSLSNGWNVNSYLKSLSKALK 1199

Query: 61   ALKLSPSMSANPKEGSNGSCMVLYVICPFPDPLEVLQTVVESSIAVGSVMLQSDRDRRTI 120
             LKL   +  N KEGS   C+V+Y++CPFPDP  VL+T+VESSIA+GSV +QSDRDRR+I
Sbjct: 1200 GLKLGSGLYTNQKEGSGSPCVVVYIVCPFPDPSAVLRTIVESSIALGSV-IQSDRDRRSI 1259

Query: 121  LCSQVAKSLSCSAAVDESSASNVLVLQGFTLPKLVLQIVTVDVIFRVSSPSVNELVILKE 180
            L SQVA++ S S AVDE+S S++ VL GF++PKLVLQ+V+VD IFR++SPS NELVILK+
Sbjct: 1260 LNSQVARAFSSSTAVDEASISHIPVLSGFSVPKLVLQVVSVDSIFRITSPSFNELVILKD 1319

Query: 181  TAFTIYNKARRISRGTSNDAVQSSSISSRSHSVLSSMSPSIPGMWKDCVGPRMTGHSLPR 240
            TAF++YNKARRISRG  NDA  SSS+ SRS S L+ M+ SI G+WKDC G RMTG + PR
Sbjct: 1320 TAFSVYNKARRISRGMPNDAFFSSSLPSRSSSALTPMN-SISGIWKDCGGSRMTGSTHPR 1379

Query: 241  EGEIDGTLRS 251
            +GEID +LR+
Sbjct: 1380 DGEIDVSLRT 1387

[Close]

BLAST of MELO3C015582 vs. NCBI nr
Match: gi|659100287|ref|XP_008451019.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 13 [Cucumis melo])

HSP 1 Score: 483.4 bits (1243), Expect = 2.5e-133
Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 1


Query: 1    MDTESGKWLSSGFVLLDCPQSMKIDSSSASIVGSISDYLLSLSNGWDLTSYLRSLSKALK 60
            MDTESGKWLSSGFVLLDCPQSMKIDSSSASIVGSISDYLLSLSNGWDLTSYLRSLSKALK
Sbjct: 1177 MDTESGKWLSSGFVLLDCPQSMKIDSSSASIVGSISDYLLSLSNGWDLTSYLRSLSKALK 1236

Query: 61   ALKLSPSMSANPKEGSNGSCMVLYVICPFPDPLEVLQTVVESSIAVGSVMLQSDRDRRTI 120
            ALKLSPSMSANPKEGSNGSCMVLYVICPFPDPLEVLQTVVESSIAVGSVMLQSDRDRRTI
Sbjct: 1237 ALKLSPSMSANPKEGSNGSCMVLYVICPFPDPLEVLQTVVESSIAVGSVMLQSDRDRRTI 1296

Query: 121  LCSQVAKSLSCSAAVDESSASNVLVLQGFTLPKLVLQIVTVDVIFRVSSPSVNELVILKE 180
            LCSQVAKSLSCSAAVDESSASNVLVLQGFTLPKLVLQIVTVDVIFRVSSPSVNELVILKE
Sbjct: 1297 LCSQVAKSLSCSAAVDESSASNVLVLQGFTLPKLVLQIVTVDVIFRVSSPSVNELVILKE 1356

Query: 181  TAFTIYNKARRISRGTSNDAVQSSSISSRSHSVLSSMSPSIPGMWKDCVGPRMTGHSLPR 240
            TAFTIYNKARRISRGTSNDAVQSSSISSRSHSVLSSMSPSIPGMWKDCVGPRMTGHSLPR
Sbjct: 1357 TAFTIYNKARRISRGTSNDAVQSSSISSRSHSVLSSMSPSIPGMWKDCVGPRMTGHSLPR 1416

Query: 241  EGEIDGTLRS 251
            EGEIDGTLRS
Sbjct: 1417 EGEIDGTLRS 1426

[Close]

BLAST of MELO3C015582 vs. NCBI nr
Match: gi|778663325|ref|XP_011660061.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 13 [Cucumis sativus])

HSP 1 Score: 480.7 bits (1236), Expect = 1.6e-132
Identity = 247/250 (98.80%), Postives = 249/250 (99.60%), Query Frame = 1


Query: 1    MDTESGKWLSSGFVLLDCPQSMKIDSSSASIVGSISDYLLSLSNGWDLTSYLRSLSKALK 60
            MDTESGKWLSSGFVLLDCPQSMKIDSSSASIVGSISDYLLSLSNGWDLTSYLRSLSKALK
Sbjct: 1178 MDTESGKWLSSGFVLLDCPQSMKIDSSSASIVGSISDYLLSLSNGWDLTSYLRSLSKALK 1237

Query: 61   ALKLSPSMSANPKEGSNGSCMVLYVICPFPDPLEVLQTVVESSIAVGSVMLQSDRDRRTI 120
            ALKLSPSMSANPKEGSNGSCMVLYVICPFPDPLEVLQTVVESS+AVGSVMLQSDRDRRTI
Sbjct: 1238 ALKLSPSMSANPKEGSNGSCMVLYVICPFPDPLEVLQTVVESSVAVGSVMLQSDRDRRTI 1297

Query: 121  LCSQVAKSLSCSAAVDESSASNVLVLQGFTLPKLVLQIVTVDVIFRVSSPSVNELVILKE 180
            LCSQVAKSLSCSAAVDESSASNVLVLQGFTLPKLVLQIVTVDVIFRVSSPSVNELVILKE
Sbjct: 1298 LCSQVAKSLSCSAAVDESSASNVLVLQGFTLPKLVLQIVTVDVIFRVSSPSVNELVILKE 1357

Query: 181  TAFTIYNKARRISRGTSNDAVQSSSISSRSHSVLSSMSPSIPGMWKDCVGPRMTGHSLPR 240
            TAFTIYNKARRISRGTSNDA QSSS+SSRSHSVLSSMSPSIPGMWKDCVGPRMTGHSLPR
Sbjct: 1358 TAFTIYNKARRISRGTSNDAAQSSSLSSRSHSVLSSMSPSIPGMWKDCVGPRMTGHSLPR 1417

Query: 241  EGEIDGTLRS 251
            EGEIDGTLRS
Sbjct: 1418 EGEIDGTLRS 1427

[Close]

BLAST of MELO3C015582 vs. NCBI nr
Match: gi|700211265|gb|KGN66361.1| (hypothetical protein Csa_1G599542 [Cucumis sativus])

HSP 1 Score: 480.7 bits (1236), Expect = 1.6e-132
Identity = 247/250 (98.80%), Postives = 249/250 (99.60%), Query Frame = 1


Query: 1   MDTESGKWLSSGFVLLDCPQSMKIDSSSASIVGSISDYLLSLSNGWDLTSYLRSLSKALK 60
           MDTESGKWLSSGFVLLDCPQSMKIDSSSASIVGSISDYLLSLSNGWDLTSYLRSLSKALK
Sbjct: 725 MDTESGKWLSSGFVLLDCPQSMKIDSSSASIVGSISDYLLSLSNGWDLTSYLRSLSKALK 784

Query: 61  ALKLSPSMSANPKEGSNGSCMVLYVICPFPDPLEVLQTVVESSIAVGSVMLQSDRDRRTI 120
           ALKLSPSMSANPKEGSNGSCMVLYVICPFPDPLEVLQTVVESS+AVGSVMLQSDRDRRTI
Sbjct: 785 ALKLSPSMSANPKEGSNGSCMVLYVICPFPDPLEVLQTVVESSVAVGSVMLQSDRDRRTI 844

Query: 121 LCSQVAKSLSCSAAVDESSASNVLVLQGFTLPKLVLQIVTVDVIFRVSSPSVNELVILKE 180
           LCSQVAKSLSCSAAVDESSASNVLVLQGFTLPKLVLQIVTVDVIFRVSSPSVNELVILKE
Sbjct: 845 LCSQVAKSLSCSAAVDESSASNVLVLQGFTLPKLVLQIVTVDVIFRVSSPSVNELVILKE 904

Query: 181 TAFTIYNKARRISRGTSNDAVQSSSISSRSHSVLSSMSPSIPGMWKDCVGPRMTGHSLPR 240
           TAFTIYNKARRISRGTSNDA QSSS+SSRSHSVLSSMSPSIPGMWKDCVGPRMTGHSLPR
Sbjct: 905 TAFTIYNKARRISRGTSNDAAQSSSLSSRSHSVLSSMSPSIPGMWKDCVGPRMTGHSLPR 964

Query: 241 EGEIDGTLRS 251
           EGEIDGTLRS
Sbjct: 965 EGEIDGTLRS 974

[Close]

BLAST of MELO3C015582 vs. NCBI nr
Match: gi|703160937|ref|XP_010112661.1| (Mediator of RNA polymerase II transcription subunit 13-like protein [Morus notabilis])

HSP 1 Score: 377.5 bits (968), Expect = 1.9e-101
Identity = 184/249 (73.90%), Postives = 220/249 (88.35%), Query Frame = 1


Query: 1    MDTESGKWLSSGFVLLDCPQSMKIDSSSASIVGSISDYLLSLSNGWDLTSYLRSLSKALK 60
            M+ +SGK LS GF+LLDCPQ+M+I+S +AS+VGSISDY LSLSNGWDLTSYL+SLSKALK
Sbjct: 942  MEVDSGKCLSPGFILLDCPQAMRIESGNASLVGSISDYFLSLSNGWDLTSYLKSLSKALK 1001

Query: 61   ALKLSPSMSANPKEGSNGSCMVLYVICPFPDPLEVLQTVVESSIAVGSVMLQSDRDRRTI 120
            ALKL   MS N +EGS+ SCMV+YV+CPFP+P  VLQTVVESS+AVGSV+ QSDR+RR++
Sbjct: 1002 ALKLGQCMSTNTREGSSSSCMVIYVVCPFPEPTAVLQTVVESSVAVGSVIFQSDRERRSV 1061

Query: 121  LCSQVAKSLSCSAAVDESSASNVLVLQGFTLPKLVLQIVTVDVIFRVSSPSVNELVILKE 180
            L SQVAK+LSCSA+VDE+S SNVLVL GF++PKLVLQIVTVD IFRV+SPS++ELVILKE
Sbjct: 1062 LHSQVAKALSCSASVDEASISNVLVLSGFSIPKLVLQIVTVDAIFRVTSPSLSELVILKE 1121

Query: 181  TAFTIYNKARRISRGTSNDAVQSSSISSRSHSVLSSMSPSIPGMWKDCVGPRMTGHSLPR 240
             AFT+YNKARR+ RG+SNDAV SSS+S RSHSV++ M    PGMWKDC+GPR+ GHSLPR
Sbjct: 1122 IAFTVYNKARRMLRGSSNDAVHSSSLSGRSHSVMTQMPSPTPGMWKDCIGPRIAGHSLPR 1181

Query: 241  EGEIDGTLR 250
            EGEID +LR
Sbjct: 1182 EGEIDSSLR 1190

[Close]

BLAST of MELO3C015582 vs. NCBI nr
Match: gi|1009123963|ref|XP_015878819.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 13 isoform X4 [Ziziphus jujuba])

HSP 1 Score: 376.3 bits (965), Expect = 4.3e-101
Identity = 182/249 (73.09%), Postives = 222/249 (89.16%), Query Frame = 1


Query: 1    MDTESGKWLSSGFVLLDCPQSMKIDSSSASIVGSISDYLLSLSNGWDLTSYLRSLSKALK 60
            M+ +SGK  SSGFVLLDCPQ+M+I+S +AS+VGSISDY LSLSNGWDLTSYL+SLSKALK
Sbjct: 818  MEVDSGKLSSSGFVLLDCPQAMRIESGNASLVGSISDYFLSLSNGWDLTSYLKSLSKALK 877

Query: 61   ALKLSPSMSANPKEGSNGSCMVLYVICPFPDPLEVLQTVVESSIAVGSVMLQSDRDRRTI 120
            ALKL P +S N KEGS+G C+V+YV+CPFP+P  VLQTV+ESS+A+GSV+ QSDR+RR+I
Sbjct: 878  ALKLGPCLSTNAKEGSSGPCVVIYVVCPFPEPTAVLQTVIESSVAIGSVVFQSDRERRSI 937

Query: 121  LCSQVAKSLSCSAAVDESSASNVLVLQGFTLPKLVLQIVTVDVIFRVSSPSVNELVILKE 180
            L +QV K+LSCSAAVDE+S SNVL+L GF++PKLVLQ+VTVD IF+V+SPS+NEL ILKE
Sbjct: 938  LHNQVGKALSCSAAVDETSISNVLILSGFSVPKLVLQLVTVDAIFKVTSPSLNELAILKE 997

Query: 181  TAFTIYNKARRISRGTSNDAVQSSSISSRSHSVLSSMSPSIPGMWKDCVGPRMTGHSLPR 240
            TAFT+YNKARRI RG+SND +QSSS+S+RSH VL+ MS   PGMWKDC+GPR+TGHS+PR
Sbjct: 998  TAFTVYNKARRIPRGSSND-IQSSSLSNRSHLVLTQMSSPTPGMWKDCIGPRITGHSIPR 1057

Query: 241  EGEIDGTLR 250
            EGEID +LR
Sbjct: 1058 EGEIDSSLR 1065

The following BLAST results are available for this feature:

BLAST of MELO3C015582 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MED13_ARATH	6.7e-86	64.80	Mediator of RNA polymerase II transcription subunit 13 OS=Arabidopsis thaliana G...	[more]

BLAST of MELO3C015582 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M2D5_CUCSA	1.1e-132	98.80	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G599542 PE=4 SV=1	[more]
W9SJ85_9ROSA	1.4e-101	73.90	Mediator of RNA polymerase II transcription subunit 13-like protein OS=Morus not...	[more]
B9SBR0_RICCO	3.4e-97	72.40	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0344660 PE=4 SV=1	[more]
M5VYG0_PRUPE	3.4e-97	72.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000082mg PE=4 SV=1	[more]
A0A061EWA0_THECC	1.3e-96	73.09	RNA polymerase II transcription mediators isoform 3 OS=Theobroma cacao GN=TCM_02...	[more]

BLAST of MELO3C015582 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G55325.2	3.8e-87	64.80	RNA polymerase II transcription mediators	[more]

BLAST of MELO3C015582 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659100287\|ref\|XP_008451019.1\|	2.5e-133	100.00	PREDICTED: mediator of RNA polymerase II transcription subunit 13 [Cucumis melo]	[more]
gi\|778663325\|ref\|XP_011660061.1\|	1.6e-132	98.80	PREDICTED: mediator of RNA polymerase II transcription subunit 13 [Cucumis sativ...	[more]
gi\|700211265\|gb\|KGN66361.1\|	1.6e-132	98.80	hypothetical protein Csa_1G599542 [Cucumis sativus]	[more]
gi\|703160937\|ref\|XP_010112661.1\|	1.9e-101	73.90	Mediator of RNA polymerase II transcription subunit 13-like protein [Morus notab...	[more]
gi\|1009123963\|ref\|XP_015878819.1\|	4.3e-101	73.09	PREDICTED: mediator of RNA polymerase II transcription subunit 13 isoform X4 [Zi...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006544	glycine metabolic process
biological_process	GO:0006563	L-serine metabolic process
biological_process	GO:0006357	regulation of transcription from RNA polymerase II promoter
biological_process	GO:0006566	threonine metabolic process
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0004794	L-threonine ammonia-lyase activity
molecular_function	GO:0001104	RNA polymerase II transcription cofactor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C015582T1	MELO3C015582T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR10791	RAG1-ACTIVATING PROTEIN 1	coord: 1..161 score: 1.2
None	No IPR available	PANTHER	PTHR10791:SF60	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 13	coord: 1..161 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C015582	Cucurbita maxima (Rimu)	cmameB104
MELO3C015582	Wild cucumber (PI 183967)	cpimeB042
MELO3C015582	Cucumber (Chinese Long) v2	cumeB041
MELO3C015582	Watermelon (Charleston Gray)	mewcgB245
MELO3C015582	Watermelon (97103) v1	mewmB271
MELO3C015582	Cucurbita pepo (Zucchini)	cpemeB329
MELO3C015582	Cucurbita pepo (Zucchini)	cpemeB620
MELO3C015582	Bottle gourd (USVL1VR-Ls)	lsimeB396
MELO3C015582	Cucumber (Gy14) v2	cgybmeB038
MELO3C015582	Silver-seed gourd	carmeB0178
MELO3C015582	Cucumber (Chinese Long) v3	cucmeB042
MELO3C015582	Watermelon (97103) v2	mewmbB249
MELO3C015582	Wax gourd	mewgoB304
MELO3C015582	Cucurbita moschata (Rifu)	cmomeB097
MELO3C015582	Cucumber (Gy14) v1	cgymeB238