MELO3C015542.2.1 (mRNA) Melon (DHL92) v3.6.1
The following sequences are available for this feature:
Legend: CDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGGACCAATGTGAGTGGATAGTTGATTGTGTATGACAGATCTTAATGTTTTGCCTAAGGAATGTAAGTTTGCATGAGTTTTCCTTCGTATGATCTTTCGAGGAATTGTTTGAGTATTTTCTTTGTGGATGCAAACAAGACTCATAAAGTTGGTTTTGGAACTATTATTAGATCTTCTATGGCATCCATTCTAGCGACTATACATGGGTCTTAAGGAGATATAATTTAGACTTGTGTGTATTTAATATAATTTTGAAGGGTGTTTATGTTTACCAAAAAGATTTGGTATCACCTTAGAATAAGTTGCTTTGGCTTAGTTTCATGATCAATTCATTAATGAGAAAAGAAGGAAGAATGATGCGATTTCACTCATTTCCGAACAAACTCATATTCTCTAATTCACAGGTTACAGATTCGGTCAAGAGGAAGAAACTGAGAATATTGTAGCTGCTCATGCTTATTTCGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTAAATTTCTTCCTAGTTGCTTGGCCTGTAATAGGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGGCTTTAGGTCTAGGGAGGAAAGTTCAGTTGCTCCTAGGCTGA ATGGAGGACCAATGTTACAGATTCGGTCAAGAGGAAGAAACTGAGAATATTGTAGCTGCTCATGCTTATTTCGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTAAATTTCTTCCTAGTTGCTTGGCCTGTAATAGGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGGCTTTAGGTCTAGGGAGGAAAGTTCAGTTGCTCCTAGGCTGA ATGGAGGACCAATGTTACAGATTCGGTCAAGAGGAAGAAACTGAGAATATTGTAGCTGCTCATGCTTATTTCGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTAAATTTCTTCCTAGTTGCTTGGCCTGTAATAGGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGGCTTTAGGTCTAGGGAGGAAAGTTCAGTTGCTCCTAGGCTGA MEDQCYRFGQEEETENIVAAHAYFGRLIFQYASFNNSRSLNFFLVAWPVIGIWFTALGISTMALGLGRKVQLLLG
BLAST of MELO3C015542.2.1 vs. NCBI nr
Match: YP_009336173.1 (photosystem II protein D1 (chloroplast) [Ulmus macrocarpa] >APP88917.1 photosystem II protein D1 (chloroplast) [Ulmus davidiana var. japonica] >APP89072.1 photosystem II protein D1 (chloroplast) [Ulmus macrocarpa]) HSP 1 Score: 116.3 bits (290), Expect = 4.4e-23 Identity = 54/58 (93.10%), Postives = 57/58 (98.28%), Query Frame = 0
BLAST of MELO3C015542.2.1 vs. NCBI nr
Match: AAL14703.1 (photosystem II D1 protein, partial (chloroplast) [Amaranthus powellii]) HSP 1 Score: 114.0 bits (284), Expect = 2.2e-22 Identity = 55/61 (90.16%), Postives = 56/61 (91.80%), Query Frame = 0
BLAST of MELO3C015542.2.1 vs. NCBI nr
Match: AAQ15291.1 (photosystem II D1 protein, partial (chloroplast) [Amaranthus powellii]) HSP 1 Score: 114.0 bits (284), Expect = 2.2e-22 Identity = 55/61 (90.16%), Postives = 56/61 (91.80%), Query Frame = 0
BLAST of MELO3C015542.2.1 vs. NCBI nr
Match: AAQ15290.1 (photosystem II D1 protein, partial (chloroplast) [Amaranthus powellii]) HSP 1 Score: 114.0 bits (284), Expect = 2.2e-22 Identity = 55/61 (90.16%), Postives = 56/61 (91.80%), Query Frame = 0
BLAST of MELO3C015542.2.1 vs. NCBI nr
Match: YP_004563847.1 (photosystem II protein D1 [Nelumbo lutea] >ACN49303.1 photosystem II protein D1 (chloroplast) [Nelumbo lutea]) HSP 1 Score: 114.0 bits (284), Expect = 2.2e-22 Identity = 55/61 (90.16%), Postives = 56/61 (91.80%), Query Frame = 0
BLAST of MELO3C015542.2.1 vs. TAIR10
Match: ATCG00020.1 (photosystem II reaction center protein A) HSP 1 Score: 113.6 bits (283), Expect = 5.2e-26 Identity = 54/61 (88.52%), Postives = 56/61 (91.80%), Query Frame = 0
BLAST of MELO3C015542.2.1 vs. TAIR10
Match: ATCG00270.1 (photosystem II reaction center protein D) HSP 1 Score: 43.5 bits (101), Expect = 6.6e-05 Identity = 22/57 (38.60%), Postives = 38/57 (66.67%), Query Frame = 0
BLAST of MELO3C015542.2.1 vs. Swiss-Prot
Match: sp|P02956|PSBA_AMAHY (Photosystem II protein D1 OS=Amaranthus hybridus OX=3565 GN=psbA PE=3 SV=1) HSP 1 Score: 114.0 bits (284), Expect = 7.2e-25 Identity = 55/61 (90.16%), Postives = 56/61 (91.80%), Query Frame = 0
BLAST of MELO3C015542.2.1 vs. Swiss-Prot
Match: sp|A6MM16|PSBA_BUXMI (Photosystem II protein D1 OS=Buxus microphylla OX=153571 GN=psbA PE=3 SV=1) HSP 1 Score: 114.0 bits (284), Expect = 7.2e-25 Identity = 55/61 (90.16%), Postives = 56/61 (91.80%), Query Frame = 0
BLAST of MELO3C015542.2.1 vs. Swiss-Prot
Match: sp|A6YGB8|PSBA_PLETE (Photosystem II protein D1 OS=Pleurastrum terricola OX=34116 GN=psbA PE=3 SV=2) HSP 1 Score: 114.0 bits (284), Expect = 7.2e-25 Identity = 55/61 (90.16%), Postives = 56/61 (91.80%), Query Frame = 0
BLAST of MELO3C015542.2.1 vs. Swiss-Prot
Match: sp|Q3V554|PSBA_ACOCL (Photosystem II protein D1 OS=Acorus calamus OX=4465 GN=psbA PE=3 SV=1) HSP 1 Score: 113.6 bits (283), Expect = 9.4e-25 Identity = 54/61 (88.52%), Postives = 56/61 (91.80%), Query Frame = 0
BLAST of MELO3C015542.2.1 vs. Swiss-Prot
Match: sp|A4QJI0|PSBA_AETGR (Photosystem II protein D1 OS=Aethionema grandiflorum OX=72657 GN=psbA PE=3 SV=1) HSP 1 Score: 113.6 bits (283), Expect = 9.4e-25 Identity = 54/61 (88.52%), Postives = 56/61 (91.80%), Query Frame = 0
BLAST of MELO3C015542.2.1 vs. TrEMBL
Match: tr|A0A1L5YDG6|A0A1L5YDG6_9ROSA (Photosystem II protein D1 OS=Ulmus davidiana var. japonica OX=1510014 GN=psbA PE=3 SV=1) HSP 1 Score: 116.3 bits (290), Expect = 2.9e-23 Identity = 54/58 (93.10%), Postives = 57/58 (98.28%), Query Frame = 0
BLAST of MELO3C015542.2.1 vs. TrEMBL
Match: tr|A0A1L5YDY6|A0A1L5YDY6_9ROSA (Photosystem II protein D1 OS=Ulmus macrocarpa OX=1043716 GN=psbA PE=3 SV=1) HSP 1 Score: 116.3 bits (290), Expect = 2.9e-23 Identity = 54/58 (93.10%), Postives = 57/58 (98.28%), Query Frame = 0
BLAST of MELO3C015542.2.1 vs. TrEMBL
Match: tr|A0A0E0IVZ4|A0A0E0IVZ4_ORYNI (Photosystem II protein D1 OS=Oryza nivara OX=4536 PE=3 SV=1) HSP 1 Score: 115.2 bits (287), Expect = 6.5e-23 Identity = 55/61 (90.16%), Postives = 57/61 (93.44%), Query Frame = 0
BLAST of MELO3C015542.2.1 vs. TrEMBL
Match: tr|B5L2Z7|B5L2Z7_9VIRU (D1 protein (Fragment) OS=uncultured cyanophage OX=215796 GN=psbA PE=4 SV=1) HSP 1 Score: 114.0 bits (284), Expect = 1.5e-22 Identity = 53/61 (86.89%), Postives = 56/61 (91.80%), Query Frame = 0
BLAST of MELO3C015542.2.1 vs. TrEMBL
Match: tr|A0A097KPI7|A0A097KPI7_9VIRI (Photosystem II protein D1 OS=Interfilum terricola OX=163310 GN=psbA PE=3 SV=1) HSP 1 Score: 114.0 bits (284), Expect = 1.5e-22 Identity = 55/61 (90.16%), Postives = 56/61 (91.80%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
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