MELO3C015542.2 (gene) Melon (DHL92) v3.6.1

NameMELO3C015542.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionPhotosystem II 32 kDa protein
Locationchr02 : 2671090 .. 2671712 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGACCAATGTGAGTGGATAGTTGATTGTGTATGACAGATCTTAATGTTTTGCCTAAGGAATGTAAGTTTGCATGAGTTTTCCTTCGTATGATCTTTCGAGGAATTGTTTGAGTATTTTCTTTGTGGATGCAAACAAGACTCATAAAGTTGGTTTTGGAACTATTATTAGATCTTCTATGGCATCCATTCTAGCGACTATACATGGGTCTTAAGGAGATATAATTTAGACTTGTGTGTATTTAATATAATTTTGAAGGGTGTTTATGTTTACCAAAAAGATTTGGTATCACCTTAGAATAAGTTGCTTTGGCTTAGTTTCATGATCAATTCATTAATGAGAAAAGAAGGAAGAATGATGCGATTTCACTCATTTCCGAACAAACTCATATTCTCTAATTCACAGGTTACAGATTCGGTCAAGAGGAAGAAACTGAGAATATTGTAGCTGCTCATGCTTATTTCGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTAAATTTCTTCCTAGTTGCTTGGCCTGTAATAGGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGGCTTTAGGTCTAGGGAGGAAAGTTCAGTTGCTCCTAGGCTGA

mRNA sequence

ATGGAGGACCAATGTTACAGATTCGGTCAAGAGGAAGAAACTGAGAATATTGTAGCTGCTCATGCTTATTTCGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTAAATTTCTTCCTAGTTGCTTGGCCTGTAATAGGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGGCTTTAGGTCTAGGGAGGAAAGTTCAGTTGCTCCTAGGCTGA

Coding sequence (CDS)

ATGGAGGACCAATGTTACAGATTCGGTCAAGAGGAAGAAACTGAGAATATTGTAGCTGCTCATGCTTATTTCGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTAAATTTCTTCCTAGTTGCTTGGCCTGTAATAGGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGGCTTTAGGTCTAGGGAGGAAAGTTCAGTTGCTCCTAGGCTGA

Protein sequence

MEDQCYRFGQEEETENIVAAHAYFGRLIFQYASFNNSRSLNFFLVAWPVIGIWFTALGISTMALGLGRKVQLLLG
BLAST of MELO3C015542.2 vs. NCBI nr
Match: YP_009336173.1 (photosystem II protein D1 (chloroplast) [Ulmus macrocarpa] >APP88917.1 photosystem II protein D1 (chloroplast) [Ulmus davidiana var. japonica] >APP89072.1 photosystem II protein D1 (chloroplast) [Ulmus macrocarpa])

HSP 1 Score: 116.3 bits (290), Expect = 4.4e-23
Identity = 54/58 (93.10%), Postives = 57/58 (98.28%), Query Frame = 0

Query: 6   YRFGQEEETENIVAAHAYFGRLIFQYASFNNSRSLNFFLVAWPVIGIWFTALGISTMA 64
           YRFGQEEETEN+VAAHAYFGRLIFQYASFNNSRSL+FFL AWPV+GIWFTALGISTMA
Sbjct: 237 YRFGQEEETENLVAAHAYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMA 294

BLAST of MELO3C015542.2 vs. NCBI nr
Match: AAL14703.1 (photosystem II D1 protein, partial (chloroplast) [Amaranthus powellii])

HSP 1 Score: 114.0 bits (284), Expect = 2.2e-22
Identity = 55/61 (90.16%), Postives = 56/61 (91.80%), Query Frame = 0

Query: 6   YRFGQEEETENIVAAHAYFGRLIFQYASFNNSRSLNFFLVAWPVIGIWFTALGISTMALG 65
           YRFGQEEET NIVAAH YFGRLIFQYASFNNSRSL+FFL AWPVIGIWFTALGISTMA  
Sbjct: 237 YRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVIGIWFTALGISTMAFN 296

Query: 66  L 67
           L
Sbjct: 297 L 297

BLAST of MELO3C015542.2 vs. NCBI nr
Match: AAQ15291.1 (photosystem II D1 protein, partial (chloroplast) [Amaranthus powellii])

HSP 1 Score: 114.0 bits (284), Expect = 2.2e-22
Identity = 55/61 (90.16%), Postives = 56/61 (91.80%), Query Frame = 0

Query: 6   YRFGQEEETENIVAAHAYFGRLIFQYASFNNSRSLNFFLVAWPVIGIWFTALGISTMALG 65
           YRFGQEEET NIVAAH YFGRLIFQYASFNNSRSL+FFL AWPVIGIWFTALGISTMA  
Sbjct: 192 YRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVIGIWFTALGISTMAFN 251

Query: 66  L 67
           L
Sbjct: 252 L 252

BLAST of MELO3C015542.2 vs. NCBI nr
Match: AAQ15290.1 (photosystem II D1 protein, partial (chloroplast) [Amaranthus powellii])

HSP 1 Score: 114.0 bits (284), Expect = 2.2e-22
Identity = 55/61 (90.16%), Postives = 56/61 (91.80%), Query Frame = 0

Query: 6   YRFGQEEETENIVAAHAYFGRLIFQYASFNNSRSLNFFLVAWPVIGIWFTALGISTMALG 65
           YRFGQEEET NIVAAH YFGRLIFQYASFNNSRSL+FFL AWPVIGIWFTALGISTMA  
Sbjct: 192 YRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVIGIWFTALGISTMAFN 251

Query: 66  L 67
           L
Sbjct: 252 L 252

BLAST of MELO3C015542.2 vs. NCBI nr
Match: YP_004563847.1 (photosystem II protein D1 [Nelumbo lutea] >ACN49303.1 photosystem II protein D1 (chloroplast) [Nelumbo lutea])

HSP 1 Score: 114.0 bits (284), Expect = 2.2e-22
Identity = 55/61 (90.16%), Postives = 56/61 (91.80%), Query Frame = 0

Query: 6   YRFGQEEETENIVAAHAYFGRLIFQYASFNNSRSLNFFLVAWPVIGIWFTALGISTMALG 65
           YRFGQEEET NIVAAH YFGRLIFQYASFNNSRSL+FFL AWPVIGIWFTALGISTMA  
Sbjct: 237 YRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVIGIWFTALGISTMAFN 296

Query: 66  L 67
           L
Sbjct: 297 L 297

BLAST of MELO3C015542.2 vs. TAIR10
Match: ATCG00020.1 (photosystem II reaction center protein A)

HSP 1 Score: 113.6 bits (283), Expect = 5.2e-26
Identity = 54/61 (88.52%), Postives = 56/61 (91.80%), Query Frame = 0

Query: 6   YRFGQEEETENIVAAHAYFGRLIFQYASFNNSRSLNFFLVAWPVIGIWFTALGISTMALG 65
           YRFGQEEET NIVAAH YFGRLIFQYASFNNSRSL+FFL AWPV+GIWFTALGISTMA  
Sbjct: 237 YRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN 296

Query: 66  L 67
           L
Sbjct: 297 L 297

BLAST of MELO3C015542.2 vs. TAIR10
Match: ATCG00270.1 (photosystem II reaction center protein D)

HSP 1 Score: 43.5 bits (101), Expect = 6.6e-05
Identity = 22/57 (38.60%), Postives = 38/57 (66.67%), Query Frame = 0

Query: 10  QEEETENIVAAHAYFGRLIFQYASFNNSRSLNFFLVAWPVIGIWFTALGISTMALGL 67
           Q EET ++V A+ ++ ++     +F+N R L+FF++  PV G+W +ALG+  +AL L
Sbjct: 240 QAEETYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNL 294

BLAST of MELO3C015542.2 vs. Swiss-Prot
Match: sp|P02956|PSBA_AMAHY (Photosystem II protein D1 OS=Amaranthus hybridus OX=3565 GN=psbA PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 7.2e-25
Identity = 55/61 (90.16%), Postives = 56/61 (91.80%), Query Frame = 0

Query: 6   YRFGQEEETENIVAAHAYFGRLIFQYASFNNSRSLNFFLVAWPVIGIWFTALGISTMALG 65
           YRFGQEEET NIVAAH YFGRLIFQYASFNNSRSL+FFL AWPVIGIWFTALGISTMA  
Sbjct: 237 YRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVIGIWFTALGISTMAFN 296

Query: 66  L 67
           L
Sbjct: 297 L 297

BLAST of MELO3C015542.2 vs. Swiss-Prot
Match: sp|A6MM16|PSBA_BUXMI (Photosystem II protein D1 OS=Buxus microphylla OX=153571 GN=psbA PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 7.2e-25
Identity = 55/61 (90.16%), Postives = 56/61 (91.80%), Query Frame = 0

Query: 6   YRFGQEEETENIVAAHAYFGRLIFQYASFNNSRSLNFFLVAWPVIGIWFTALGISTMALG 65
           YRFGQEEET NIVAAH YFGRLIFQYASFNNSRSL+FFL AWPVIGIWFTALGISTMA  
Sbjct: 237 YRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVIGIWFTALGISTMAFN 296

Query: 66  L 67
           L
Sbjct: 297 L 297

BLAST of MELO3C015542.2 vs. Swiss-Prot
Match: sp|A6YGB8|PSBA_PLETE (Photosystem II protein D1 OS=Pleurastrum terricola OX=34116 GN=psbA PE=3 SV=2)

HSP 1 Score: 114.0 bits (284), Expect = 7.2e-25
Identity = 55/61 (90.16%), Postives = 56/61 (91.80%), Query Frame = 0

Query: 6   YRFGQEEETENIVAAHAYFGRLIFQYASFNNSRSLNFFLVAWPVIGIWFTALGISTMALG 65
           YRFGQEEET NIVAAH YFGRLIFQYASFNNSRSL+FFL AWPVIGIWFTALGISTMA  
Sbjct: 237 YRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVIGIWFTALGISTMAFN 296

Query: 66  L 67
           L
Sbjct: 297 L 297

BLAST of MELO3C015542.2 vs. Swiss-Prot
Match: sp|Q3V554|PSBA_ACOCL (Photosystem II protein D1 OS=Acorus calamus OX=4465 GN=psbA PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 9.4e-25
Identity = 54/61 (88.52%), Postives = 56/61 (91.80%), Query Frame = 0

Query: 6   YRFGQEEETENIVAAHAYFGRLIFQYASFNNSRSLNFFLVAWPVIGIWFTALGISTMALG 65
           YRFGQEEET NIVAAH YFGRLIFQYASFNNSRSL+FFL AWPV+GIWFTALGISTMA  
Sbjct: 237 YRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN 296

Query: 66  L 67
           L
Sbjct: 297 L 297

BLAST of MELO3C015542.2 vs. Swiss-Prot
Match: sp|A4QJI0|PSBA_AETGR (Photosystem II protein D1 OS=Aethionema grandiflorum OX=72657 GN=psbA PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 9.4e-25
Identity = 54/61 (88.52%), Postives = 56/61 (91.80%), Query Frame = 0

Query: 6   YRFGQEEETENIVAAHAYFGRLIFQYASFNNSRSLNFFLVAWPVIGIWFTALGISTMALG 65
           YRFGQEEET NIVAAH YFGRLIFQYASFNNSRSL+FFL AWPV+GIWFTALGISTMA  
Sbjct: 237 YRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN 296

Query: 66  L 67
           L
Sbjct: 297 L 297

BLAST of MELO3C015542.2 vs. TrEMBL
Match: tr|A0A1L5YDG6|A0A1L5YDG6_9ROSA (Photosystem II protein D1 OS=Ulmus davidiana var. japonica OX=1510014 GN=psbA PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.9e-23
Identity = 54/58 (93.10%), Postives = 57/58 (98.28%), Query Frame = 0

Query: 6   YRFGQEEETENIVAAHAYFGRLIFQYASFNNSRSLNFFLVAWPVIGIWFTALGISTMA 64
           YRFGQEEETEN+VAAHAYFGRLIFQYASFNNSRSL+FFL AWPV+GIWFTALGISTMA
Sbjct: 237 YRFGQEEETENLVAAHAYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMA 294

BLAST of MELO3C015542.2 vs. TrEMBL
Match: tr|A0A1L5YDY6|A0A1L5YDY6_9ROSA (Photosystem II protein D1 OS=Ulmus macrocarpa OX=1043716 GN=psbA PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.9e-23
Identity = 54/58 (93.10%), Postives = 57/58 (98.28%), Query Frame = 0

Query: 6   YRFGQEEETENIVAAHAYFGRLIFQYASFNNSRSLNFFLVAWPVIGIWFTALGISTMA 64
           YRFGQEEETEN+VAAHAYFGRLIFQYASFNNSRSL+FFL AWPV+GIWFTALGISTMA
Sbjct: 237 YRFGQEEETENLVAAHAYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMA 294

BLAST of MELO3C015542.2 vs. TrEMBL
Match: tr|A0A0E0IVZ4|A0A0E0IVZ4_ORYNI (Photosystem II protein D1 OS=Oryza nivara OX=4536 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 6.5e-23
Identity = 55/61 (90.16%), Postives = 57/61 (93.44%), Query Frame = 0

Query: 6   YRFGQEEETENIVAAHAYFGRLIFQYASFNNSRSLNFFLVAWPVIGIWFTALGISTMALG 65
           YRFGQEEET NIVAAH YFGRLIFQYASFNNSRSL+FFLVAWPV+GIWFTALGISTMA  
Sbjct: 237 YRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLVAWPVVGIWFTALGISTMAFN 296

Query: 66  L 67
           L
Sbjct: 297 L 297

BLAST of MELO3C015542.2 vs. TrEMBL
Match: tr|B5L2Z7|B5L2Z7_9VIRU (D1 protein (Fragment) OS=uncultured cyanophage OX=215796 GN=psbA PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.5e-22
Identity = 53/61 (86.89%), Postives = 56/61 (91.80%), Query Frame = 0

Query: 6   YRFGQEEETENIVAAHAYFGRLIFQYASFNNSRSLNFFLVAWPVIGIWFTALGISTMALG 65
           Y+FGQEEET NIVAAH YFGRLIFQYASFNNSRSLNFFL AWPV+GIWFTALG+STMA  
Sbjct: 155 YKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLNFFLAAWPVVGIWFTALGVSTMAFN 214

Query: 66  L 67
           L
Sbjct: 215 L 215

BLAST of MELO3C015542.2 vs. TrEMBL
Match: tr|A0A097KPI7|A0A097KPI7_9VIRI (Photosystem II protein D1 OS=Interfilum terricola OX=163310 GN=psbA PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.5e-22
Identity = 55/61 (90.16%), Postives = 56/61 (91.80%), Query Frame = 0

Query: 6   YRFGQEEETENIVAAHAYFGRLIFQYASFNNSRSLNFFLVAWPVIGIWFTALGISTMALG 65
           YRFGQEEET NIVAAH YFGRLIFQYASFNNSRSL+FFL AWPVIGIWFTALGISTMA  
Sbjct: 237 YRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVIGIWFTALGISTMAFN 296

Query: 66  L 67
           L
Sbjct: 297 L 297

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
YP_009336173.14.4e-2393.10photosystem II protein D1 (chloroplast) [Ulmus macrocarpa] >APP88917.1 photosyst... [more]
AAL14703.12.2e-2290.16photosystem II D1 protein, partial (chloroplast) [Amaranthus powellii][more]
AAQ15291.12.2e-2290.16photosystem II D1 protein, partial (chloroplast) [Amaranthus powellii][more]
AAQ15290.12.2e-2290.16photosystem II D1 protein, partial (chloroplast) [Amaranthus powellii][more]
YP_004563847.12.2e-2290.16photosystem II protein D1 [Nelumbo lutea] >ACN49303.1 photosystem II protein D1 ... [more]
Match NameE-valueIdentityDescription
ATCG00020.15.2e-2688.52photosystem II reaction center protein A[more]
ATCG00270.16.6e-0538.60photosystem II reaction center protein D[more]
Match NameE-valueIdentityDescription
sp|P02956|PSBA_AMAHY7.2e-2590.16Photosystem II protein D1 OS=Amaranthus hybridus OX=3565 GN=psbA PE=3 SV=1[more]
sp|A6MM16|PSBA_BUXMI7.2e-2590.16Photosystem II protein D1 OS=Buxus microphylla OX=153571 GN=psbA PE=3 SV=1[more]
sp|A6YGB8|PSBA_PLETE7.2e-2590.16Photosystem II protein D1 OS=Pleurastrum terricola OX=34116 GN=psbA PE=3 SV=2[more]
sp|Q3V554|PSBA_ACOCL9.4e-2588.52Photosystem II protein D1 OS=Acorus calamus OX=4465 GN=psbA PE=3 SV=1[more]
sp|A4QJI0|PSBA_AETGR9.4e-2588.52Photosystem II protein D1 OS=Aethionema grandiflorum OX=72657 GN=psbA PE=3 SV=1[more]
Match NameE-valueIdentityDescription
tr|A0A1L5YDG6|A0A1L5YDG6_9ROSA2.9e-2393.10Photosystem II protein D1 OS=Ulmus davidiana var. japonica OX=1510014 GN=psbA PE... [more]
tr|A0A1L5YDY6|A0A1L5YDY6_9ROSA2.9e-2393.10Photosystem II protein D1 OS=Ulmus macrocarpa OX=1043716 GN=psbA PE=3 SV=1[more]
tr|A0A0E0IVZ4|A0A0E0IVZ4_ORYNI6.5e-2390.16Photosystem II protein D1 OS=Oryza nivara OX=4536 PE=3 SV=1[more]
tr|B5L2Z7|B5L2Z7_9VIRU1.5e-2286.89D1 protein (Fragment) OS=uncultured cyanophage OX=215796 GN=psbA PE=4 SV=1[more]
tr|A0A097KPI7|A0A097KPI7_9VIRI1.5e-2290.16Photosystem II protein D1 OS=Interfilum terricola OX=163310 GN=psbA PE=3 SV=1[more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0045156electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
Vocabulary: Biological Process
TermDefinition
GO:0009772photosynthetic electron transport in photosystem II
GO:0019684photosynthesis, light reaction
Vocabulary: INTERPRO
TermDefinition
IPR036854Photo_II_D1/D2_sf
IPR000484Photo_RC_L/M
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019684 photosynthesis, light reaction
biological_process GO:0009772 photosynthetic electron transport in photosystem II
cellular_component GO:0009507 chloroplast
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
cellular_component GO:0009536 plastid
molecular_function GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C015542.2.1MELO3C015542.2.1mRNA


Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000484Photosynthetic reaction centre, L/MPFAMPF00124Photo_RCcoord: 6..63
e-value: 9.7E-7
score: 28.2
IPR000484Photosynthetic reaction centre, L/MPANTHERPTHR33149FAMILY NOT NAMEDcoord: 3..66
NoneNo IPR availablePANTHERPTHR33149:SF11PHOTOSYSTEM II PROTEIN D1coord: 3..66
IPR036854Photosystem II protein D1/D2 superfamilySUPERFAMILYSSF81483Bacterial photosystem II reaction centre, L and M subunitscoord: 6..67

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None