MELO3C015095T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C015095T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
Description2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
Locationchr2 : 7565251 .. 7565409 (+)
Sequence length159
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGCGAAACACCCAGCAGCAACAATGGAACCTCGAGCGGCAAGGAGGGAGATTTGAGGGGATTTGATGAGGGAGAACACACAATGAAAGGAAAAAGGGTTGAGCACGAACACGAGTTGAAGACAATAAGGCAGGGGAGGGTTTCAGCCGTTTGA

mRNA sequence

ATGGCAAGCGAAACACCCAGCAGCAACAATGGAACCTCGAGCGGCAAGGAGGGAGATTTGAGGGGATTTGATGAGGGAGAACACACAATGAAAGGAAAAAGGGTTGAGCACGAACACGAGTTGAAGACAATAAGGCAGGGGAGGGTTTCAGCCGTTTGA

Coding sequence (CDS)

ATGGCAAGCGAAACACCCAGCAGCAACAATGGAACCTCGAGCGGCAAGGAGGGAGATTTGAGGGGATTTGATGAGGGAGAACACACAATGAAAGGAAAAAGGGTTGAGCACGAACACGAGTTGAAGACAATAAGGCAGGGGAGGGTTTCAGCCGTTTGA

Protein sequence

MASETPSSNNGTSSGKEGDLRGFDEGEHTMKGKRVEHEHELKTIRQGRVSAV*
Homology
[Close]
BLAST of MELO3C015095T1 vs. TrEMBL
Match: E5GCJ2_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 8.9e-13
Identity = 43/60 (71.67%), Postives = 45/60 (75.00%), Query Frame = 1 

Query: 1  MASETPSSNNGTSSGKEGDLRGFDEGEHTMKGKRVEHEH--------ELKTIRQGRVSAV 53
          M SETPS NN TSSGK+GDLRGFDEGEH  KGKRV +EH         LKTIRQGRVSAV
Sbjct: 1  MTSETPSRNNETSSGKKGDLRGFDEGEHRTKGKRVLYEHGLRGKPENGLKTIRQGRVSAV 60

[Close]
BLAST of MELO3C015095T1 vs. TrEMBL
Match: E5GB71_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 3.8e-11
Identity = 41/60 (68.33%), Postives = 41/60 (68.33%), Query Frame = 1 

Query: 1  MASETPSSNNGTSSGKEGDLRGFDEGEHTMKGKRVEH--------EHELKTIRQGRVSAV 53
          M SET S NNG SSGKEGDLRGFDE EH MK KRV H        EH LKTIRQGRV  V
Sbjct: 1  MTSETLSRNNGASSGKEGDLRGFDEEEHKMKEKRVSHEHGLRGKPEHGLKTIRQGRVLTV 60

[Close]
BLAST of MELO3C015095T1 vs. NCBI nr
Match: gi|307136380|gb|ADN34191.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 80.1 bits (196), Expect = 1.3e-12
Identity = 43/60 (71.67%), Postives = 45/60 (75.00%), Query Frame = 1 

Query: 1  MASETPSSNNGTSSGKEGDLRGFDEGEHTMKGKRVEHEH--------ELKTIRQGRVSAV 53
          M SETPS NN TSSGK+GDLRGFDEGEH  KGKRV +EH         LKTIRQGRVSAV
Sbjct: 1  MTSETPSRNNETSSGKKGDLRGFDEGEHRTKGKRVLYEHGLRGKPENGLKTIRQGRVSAV 60

[Close]
BLAST of MELO3C015095T1 vs. NCBI nr
Match: gi|307135843|gb|ADN33713.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 74.7 bits (182), Expect = 5.4e-11
Identity = 41/60 (68.33%), Postives = 41/60 (68.33%), Query Frame = 1 

Query: 1  MASETPSSNNGTSSGKEGDLRGFDEGEHTMKGKRVEH--------EHELKTIRQGRVSAV 53
          M SET S NNG SSGKEGDLRGFDE EH MK KRV H        EH LKTIRQGRV  V
Sbjct: 1  MTSETLSRNNGASSGKEGDLRGFDEEEHKMKEKRVSHEHGLRGKPEHGLKTIRQGRVLTV 60

The following BLAST results are available for this feature:
BLAST of MELO3C015095T1 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GCJ2_CUCME8.9e-1371.67Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GB71_CUCME3.8e-1168.33Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of MELO3C015095T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|307136380|gb|ADN34191.1|1.3e-1271.67hypothetical protein [Cucumis melo subsp. melo][more]
gi|307135843|gb|ADN33713.1|5.4e-1168.33hypothetical protein [Cucumis melo subsp. melo][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C015095MELO3C015095gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C015095T1MELO3C015095T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C015095T1.cds1MELO3C015095T1.cds1CDS