MELO3C015095 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C015095
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
Description2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
Locationchr2 : 7565251 .. 7565409 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGCGAAACACCCAGCAGCAACAATGGAACCTCGAGCGGCAAGGAGGGAGATTTGAGGGGATTTGATGAGGGAGAACACACAATGAAAGGAAAAAGGGTTGAGCACGAACACGAGTTGAAGACAATAAGGCAGGGGAGGGTTTCAGCCGTTTGA

mRNA sequence

ATGGCAAGCGAAACACCCAGCAGCAACAATGGAACCTCGAGCGGCAAGGAGGGAGATTTGAGGGGATTTGATGAGGGAGAACACACAATGAAAGGAAAAAGGGTTGAGCACGAACACGAGTTGAAGACAATAAGGCAGGGGAGGGTTTCAGCCGTTTGA

Coding sequence (CDS)

ATGGCAAGCGAAACACCCAGCAGCAACAATGGAACCTCGAGCGGCAAGGAGGGAGATTTGAGGGGATTTGATGAGGGAGAACACACAATGAAAGGAAAAAGGGTTGAGCACGAACACGAGTTGAAGACAATAAGGCAGGGGAGGGTTTCAGCCGTTTGA

Protein sequence

MASETPSSNNGTSSGKEGDLRGFDEGEHTMKGKRVEHEHELKTIRQGRVSAV*
Homology
[Close]
BLAST of MELO3C015095 vs. TrEMBL
Match: E5GCJ2_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 8.9e-13
Identity = 43/60 (71.67%), Postives = 45/60 (75.00%), Query Frame = 1 

Query: 1  MASETPSSNNGTSSGKEGDLRGFDEGEHTMKGKRVEHEH--------ELKTIRQGRVSAV 53
          M SETPS NN TSSGK+GDLRGFDEGEH  KGKRV +EH         LKTIRQGRVSAV
Sbjct: 1  MTSETPSRNNETSSGKKGDLRGFDEGEHRTKGKRVLYEHGLRGKPENGLKTIRQGRVSAV 60

[Close]
BLAST of MELO3C015095 vs. TrEMBL
Match: E5GB71_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 3.8e-11
Identity = 41/60 (68.33%), Postives = 41/60 (68.33%), Query Frame = 1 

Query: 1  MASETPSSNNGTSSGKEGDLRGFDEGEHTMKGKRVEH--------EHELKTIRQGRVSAV 53
          M SET S NNG SSGKEGDLRGFDE EH MK KRV H        EH LKTIRQGRV  V
Sbjct: 1  MTSETLSRNNGASSGKEGDLRGFDEEEHKMKEKRVSHEHGLRGKPEHGLKTIRQGRVLTV 60

[Close]
BLAST of MELO3C015095 vs. NCBI nr
Match: gi|307136380|gb|ADN34191.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 80.1 bits (196), Expect = 1.3e-12
Identity = 43/60 (71.67%), Postives = 45/60 (75.00%), Query Frame = 1 

Query: 1  MASETPSSNNGTSSGKEGDLRGFDEGEHTMKGKRVEHEH--------ELKTIRQGRVSAV 53
          M SETPS NN TSSGK+GDLRGFDEGEH  KGKRV +EH         LKTIRQGRVSAV
Sbjct: 1  MTSETPSRNNETSSGKKGDLRGFDEGEHRTKGKRVLYEHGLRGKPENGLKTIRQGRVSAV 60

[Close]
BLAST of MELO3C015095 vs. NCBI nr
Match: gi|307135843|gb|ADN33713.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 74.7 bits (182), Expect = 5.4e-11
Identity = 41/60 (68.33%), Postives = 41/60 (68.33%), Query Frame = 1 

Query: 1  MASETPSSNNGTSSGKEGDLRGFDEGEHTMKGKRVEH--------EHELKTIRQGRVSAV 53
          M SET S NNG SSGKEGDLRGFDE EH MK KRV H        EH LKTIRQGRV  V
Sbjct: 1  MTSETLSRNNGASSGKEGDLRGFDEEEHKMKEKRVSHEHGLRGKPEHGLKTIRQGRVLTV 60

The following BLAST results are available for this feature:
BLAST of MELO3C015095 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GCJ2_CUCME8.9e-1371.67Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GB71_CUCME3.8e-1168.33Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of MELO3C015095 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|307136380|gb|ADN34191.1|1.3e-1271.67hypothetical protein [Cucumis melo subsp. melo][more]
gi|307135843|gb|ADN33713.1|5.4e-1168.33hypothetical protein [Cucumis melo subsp. melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C015095T1MELO3C015095T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C015095Cucurbita moschata (Rifu)cmomeB097
MELO3C015095Cucumber (Gy14) v1cgymeB575
MELO3C015095Cucurbita maxima (Rimu)cmameB066
MELO3C015095Cucurbita maxima (Rimu)cmameB104
MELO3C015095Cucurbita moschata (Rifu)cmomeB058
MELO3C015095Wild cucumber (PI 183967)cpimeB042
MELO3C015095Cucumber (Chinese Long) v2cumeB041
MELO3C015095Watermelon (Charleston Gray)mewcgB245
MELO3C015095Watermelon (97103) v1mewmB273
MELO3C015095Cucurbita pepo (Zucchini)cpemeB329
MELO3C015095Cucurbita pepo (Zucchini)cpemeB620
MELO3C015095Bottle gourd (USVL1VR-Ls)lsimeB396
MELO3C015095Cucumber (Gy14) v2cgybmeB038
MELO3C015095Silver-seed gourdcarmeB0876
MELO3C015095Silver-seed gourdcarmeB0947
MELO3C015095Cucumber (Chinese Long) v3cucmeB042
MELO3C015095Watermelon (97103) v2mewmbB249
MELO3C015095Wax gourdmewgoB305