MELO3C015083T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C015083T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionElongation factor Ts
Locationchr2 : 7769116 .. 7769298 (+)
Sequence length183
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGTGAAACACCCAGCCGCAACAATGGAACCTCAAGCAGCAAGGAGGGAGATTTGAGGGGATTGGATGAGAGAGAACACAGAACGAAAGGGAAAAGGGTTTCGCACGAACACGAGTTGAGGGGAAAGCCTGAAAACGGGTTGAAGACGATAAGGCAGGGGAGGGTTTCAGCCGTTTGA

mRNA sequence

ATGGCAAGTGAAACACCCAGCCGCAACAATGGAACCTCAAGCAGCAAGGAGGGAGATTTGAGGGGATTGGATGAGAGAGAACACAGAACGAAAGGGAAAAGGGTTTCGCACGAACACGAGTTGAGGGGAAAGCCTGAAAACGGGTTGAAGACGATAAGGCAGGGGAGGGTTTCAGCCGTTTGA

Coding sequence (CDS)

ATGGCAAGTGAAACACCCAGCCGCAACAATGGAACCTCAAGCAGCAAGGAGGGAGATTTGAGGGGATTGGATGAGAGAGAACACAGAACGAAAGGGAAAAGGGTTTCGCACGAACACGAGTTGAGGGGAAAGCCTGAAAACGGGTTGAAGACGATAAGGCAGGGGAGGGTTTCAGCCGTTTGA

Protein sequence

MASETPSRNNGTSSSKEGDLRGLDEREHRTKGKRVSHEHELRGKPENGLKTIRQGRVSAV*
Homology
[Close]
BLAST of MELO3C015083T1 vs. TrEMBL
Match: E5GCJ2_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 6.6e-20
Identity = 51/60 (85.00%), Postives = 53/60 (88.33%), Query Frame = 1 

Query: 1  MASETPSRNNGTSSSKEGDLRGLDEREHRTKGKRVSHEHELRGKPENGLKTIRQGRVSAV 60
          M SETPSRNN TSS K+GDLRG DE EHRTKGKRV +EH LRGKPENGLKTIRQGRVSAV
Sbjct: 1  MTSETPSRNNETSSGKKGDLRGFDEGEHRTKGKRVLYEHGLRGKPENGLKTIRQGRVSAV 60

[Close]
BLAST of MELO3C015083T1 vs. TrEMBL
Match: E5GB71_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.8e-17
Identity = 47/60 (78.33%), Postives = 49/60 (81.67%), Query Frame = 1 

Query: 1  MASETPSRNNGTSSSKEGDLRGLDEREHRTKGKRVSHEHELRGKPENGLKTIRQGRVSAV 60
          M SET SRNNG SS KEGDLRG DE EH+ K KRVSHEH LRGKPE+GLKTIRQGRV  V
Sbjct: 1  MTSETLSRNNGASSGKEGDLRGFDEEEHKMKEKRVSHEHGLRGKPEHGLKTIRQGRVLTV 60

[Close]
BLAST of MELO3C015083T1 vs. NCBI nr
Match: gi|307136380|gb|ADN34191.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 104.0 bits (258), Expect = 9.5e-20
Identity = 51/60 (85.00%), Postives = 53/60 (88.33%), Query Frame = 1 

Query: 1  MASETPSRNNGTSSSKEGDLRGLDEREHRTKGKRVSHEHELRGKPENGLKTIRQGRVSAV 60
          M SETPSRNN TSS K+GDLRG DE EHRTKGKRV +EH LRGKPENGLKTIRQGRVSAV
Sbjct: 1  MTSETPSRNNETSSGKKGDLRGFDEGEHRTKGKRVLYEHGLRGKPENGLKTIRQGRVSAV 60

[Close]
BLAST of MELO3C015083T1 vs. NCBI nr
Match: gi|307135843|gb|ADN33713.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 95.9 bits (237), Expect = 2.6e-17
Identity = 47/60 (78.33%), Postives = 49/60 (81.67%), Query Frame = 1 

Query: 1  MASETPSRNNGTSSSKEGDLRGLDEREHRTKGKRVSHEHELRGKPENGLKTIRQGRVSAV 60
          M SET SRNNG SS KEGDLRG DE EH+ K KRVSHEH LRGKPE+GLKTIRQGRV  V
Sbjct: 1  MTSETLSRNNGASSGKEGDLRGFDEEEHKMKEKRVSHEHGLRGKPEHGLKTIRQGRVLTV 60

The following BLAST results are available for this feature:
BLAST of MELO3C015083T1 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GCJ2_CUCME6.6e-2085.00Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GB71_CUCME1.8e-1778.33Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of MELO3C015083T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|307136380|gb|ADN34191.1|9.5e-2085.00hypothetical protein [Cucumis melo subsp. melo][more]
gi|307135843|gb|ADN33713.1|2.6e-1778.33hypothetical protein [Cucumis melo subsp. melo][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C015083MELO3C015083gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C015083T1MELO3C015083T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C015083T1.cds1MELO3C015083T1.cds1CDS