MELO3C015083 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C015083
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionElongation factor Ts
Locationchr2 : 7769116 .. 7769298 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGTGAAACACCCAGCCGCAACAATGGAACCTCAAGCAGCAAGGAGGGAGATTTGAGGGGATTGGATGAGAGAGAACACAGAACGAAAGGGAAAAGGGTTTCGCACGAACACGAGTTGAGGGGAAAGCCTGAAAACGGGTTGAAGACGATAAGGCAGGGGAGGGTTTCAGCCGTTTGA

mRNA sequence

ATGGCAAGTGAAACACCCAGCCGCAACAATGGAACCTCAAGCAGCAAGGAGGGAGATTTGAGGGGATTGGATGAGAGAGAACACAGAACGAAAGGGAAAAGGGTTTCGCACGAACACGAGTTGAGGGGAAAGCCTGAAAACGGGTTGAAGACGATAAGGCAGGGGAGGGTTTCAGCCGTTTGA

Coding sequence (CDS)

ATGGCAAGTGAAACACCCAGCCGCAACAATGGAACCTCAAGCAGCAAGGAGGGAGATTTGAGGGGATTGGATGAGAGAGAACACAGAACGAAAGGGAAAAGGGTTTCGCACGAACACGAGTTGAGGGGAAAGCCTGAAAACGGGTTGAAGACGATAAGGCAGGGGAGGGTTTCAGCCGTTTGA

Protein sequence

MASETPSRNNGTSSSKEGDLRGLDEREHRTKGKRVSHEHELRGKPENGLKTIRQGRVSAV*
Homology
[Close]
BLAST of MELO3C015083 vs. TrEMBL
Match: E5GCJ2_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 6.6e-20
Identity = 51/60 (85.00%), Postives = 53/60 (88.33%), Query Frame = 1 

Query: 1  MASETPSRNNGTSSSKEGDLRGLDEREHRTKGKRVSHEHELRGKPENGLKTIRQGRVSAV 60
          M SETPSRNN TSS K+GDLRG DE EHRTKGKRV +EH LRGKPENGLKTIRQGRVSAV
Sbjct: 1  MTSETPSRNNETSSGKKGDLRGFDEGEHRTKGKRVLYEHGLRGKPENGLKTIRQGRVSAV 60

[Close]
BLAST of MELO3C015083 vs. TrEMBL
Match: E5GB71_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.8e-17
Identity = 47/60 (78.33%), Postives = 49/60 (81.67%), Query Frame = 1 

Query: 1  MASETPSRNNGTSSSKEGDLRGLDEREHRTKGKRVSHEHELRGKPENGLKTIRQGRVSAV 60
          M SET SRNNG SS KEGDLRG DE EH+ K KRVSHEH LRGKPE+GLKTIRQGRV  V
Sbjct: 1  MTSETLSRNNGASSGKEGDLRGFDEEEHKMKEKRVSHEHGLRGKPEHGLKTIRQGRVLTV 60

[Close]
BLAST of MELO3C015083 vs. NCBI nr
Match: gi|307136380|gb|ADN34191.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 104.0 bits (258), Expect = 9.5e-20
Identity = 51/60 (85.00%), Postives = 53/60 (88.33%), Query Frame = 1 

Query: 1  MASETPSRNNGTSSSKEGDLRGLDEREHRTKGKRVSHEHELRGKPENGLKTIRQGRVSAV 60
          M SETPSRNN TSS K+GDLRG DE EHRTKGKRV +EH LRGKPENGLKTIRQGRVSAV
Sbjct: 1  MTSETPSRNNETSSGKKGDLRGFDEGEHRTKGKRVLYEHGLRGKPENGLKTIRQGRVSAV 60

[Close]
BLAST of MELO3C015083 vs. NCBI nr
Match: gi|307135843|gb|ADN33713.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 95.9 bits (237), Expect = 2.6e-17
Identity = 47/60 (78.33%), Postives = 49/60 (81.67%), Query Frame = 1 

Query: 1  MASETPSRNNGTSSSKEGDLRGLDEREHRTKGKRVSHEHELRGKPENGLKTIRQGRVSAV 60
          M SET SRNNG SS KEGDLRG DE EH+ K KRVSHEH LRGKPE+GLKTIRQGRV  V
Sbjct: 1  MTSETLSRNNGASSGKEGDLRGFDEEEHKMKEKRVSHEHGLRGKPEHGLKTIRQGRVLTV 60

The following BLAST results are available for this feature:
BLAST of MELO3C015083 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GCJ2_CUCME6.6e-2085.00Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GB71_CUCME1.8e-1778.33Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of MELO3C015083 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|307136380|gb|ADN34191.1|9.5e-2085.00hypothetical protein [Cucumis melo subsp. melo][more]
gi|307135843|gb|ADN33713.1|2.6e-1778.33hypothetical protein [Cucumis melo subsp. melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C015083T1MELO3C015083T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C015083Cucurbita moschata (Rifu)cmomeB058
MELO3C015083Wild cucumber (PI 183967)cpimeB042
MELO3C015083Cucumber (Chinese Long) v2cumeB041
MELO3C015083Watermelon (Charleston Gray)mewcgB245
MELO3C015083Watermelon (97103) v1mewmB273
MELO3C015083Cucurbita pepo (Zucchini)cpemeB329
MELO3C015083Cucurbita pepo (Zucchini)cpemeB620
MELO3C015083Bottle gourd (USVL1VR-Ls)lsimeB396
MELO3C015083Cucumber (Gy14) v2cgybmeB038
MELO3C015083Silver-seed gourdcarmeB0876
MELO3C015083Silver-seed gourdcarmeB0947
MELO3C015083Cucumber (Chinese Long) v3cucmeB042
MELO3C015083Watermelon (97103) v2mewmbB249
MELO3C015083Wax gourdmewgoB305
MELO3C015083Cucurbita moschata (Rifu)cmomeB097
MELO3C015083Cucumber (Gy14) v1cgymeB575
MELO3C015083Cucurbita maxima (Rimu)cmameB066
MELO3C015083Cucurbita maxima (Rimu)cmameB104