MELO3C014845T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C014845T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass
Locationchr6 : 21011804 .. 21012175 (+)
Sequence length372
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGATAAAGAAGTTTATGAGGAAGACAATGAAGAATTTGAAGAAGGAGCTGAATTTATTGAACCAGATGATGGAGAGAGGCTATCTTGTGTTTTCCAAGAGGTGCTAATTGCTCCTAAAAGGAACTCCAACCTTCAAAGACATTGCCTCTTCAAGACAAGGTGCACGGTTAGTGGGAAAGTGTGCAATGTGATTATAGACAATGGAAGTAGAGAGAACTTCGTTTCTAAGAAGCTAGTAACAGCCTTGAACCTCAAGGTGGAAGCTCATCCAAGTCCTTACAAGATCGGTTGGGTGAAGAAAACTGAAGCACAAATGAAATTTAGACCATTTCCCTTTCAATTGGAAGTAGCAACAAGAACCAAATAG

mRNA sequence

ATGGAAGATAAAGAAGTTTATGAGGAAGACAATGAAGAATTTGAAGAAGGAGCTGAATTTATTGAACCAGATGATGGAGAGAGGCTATCTTGTGTTTTCCAAGAGGTGCTAATTGCTCCTAAAAGGAACTCCAACCTTCAAAGACATTGCCTCTTCAAGACAAGGTGCACGGTTAGTGGGAAAGTGTGCAATGTGATTATAGACAATGGAAGTAGAGAGAACTTCGTTTCTAAGAAGCTAGTAACAGCCTTGAACCTCAAGGTGGAAGCTCATCCAAGTCCTTACAAGATCGGTTGGGTGAAGAAAACTGAAGCACAAATGAAATTTAGACCATTTCCCTTTCAATTGGAAGTAGCAACAAGAACCAAATAG

Coding sequence (CDS)

ATGGAAGATAAAGAAGTTTATGAGGAAGACAATGAAGAATTTGAAGAAGGAGCTGAATTTATTGAACCAGATGATGGAGAGAGGCTATCTTGTGTTTTCCAAGAGGTGCTAATTGCTCCTAAAAGGAACTCCAACCTTCAAAGACATTGCCTCTTCAAGACAAGGTGCACGGTTAGTGGGAAAGTGTGCAATGTGATTATAGACAATGGAAGTAGAGAGAACTTCGTTTCTAAGAAGCTAGTAACAGCCTTGAACCTCAAGGTGGAAGCTCATCCAAGTCCTTACAAGATCGGTTGGGTGAAGAAAACTGAAGCACAAATGAAATTTAGACCATTTCCCTTTCAATTGGAAGTAGCAACAAGAACCAAATAG

Protein sequence

MEDKEVYEEDNEEFEEGAEFIEPDDGERLSCVFQEVLIAPKRNSNLQRHCLFKTRCTVSGKVCNVIIDNGSRENFVSKKLVTALNLKVEAHPSPYKIGWVKKTEAQMKFRPFPFQLEVATRTK*
Homology
[Close]
BLAST of MELO3C014845T1 vs. TrEMBL
Match: A5BLC8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019345 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.4e-23
Identity = 55/101 (54.46%), Postives = 72/101 (71.29%), Query Frame = 1 

Query: 2   EDKEVYEEDNEEFEEGAEFIEPDDGERLSCVFQEVLIAPKRNSNLQRHCLFKTRCTVSGK 61
           E++ V EED     EG EF E D GE ++C+ Q +L+  K++ + QRH +F+T+CT+  K
Sbjct: 701 EEERVLEED---IYEGVEFAEGDVGEEVTCIVQRLLLTLKKSDDSQRHKIFRTQCTIRNK 760

Query: 62  VCNVIIDNGSRENFVSKKLVTALNLKVEAHPSPYKIGWVKK 103
           VCNVIID+GS ENFVSK LV ALNLK + HPS YKI W+ K
Sbjct: 761 VCNVIIDSGSSENFVSKALVKALNLKTKEHPSSYKIAWINK 798

[Close]
BLAST of MELO3C014845T1 vs. TrEMBL
Match: U7E091_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0229s00250g PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 4.2e-21
Identity = 55/103 (53.40%), Postives = 68/103 (66.02%), Query Frame = 1 

Query: 2   EDKEVYEEDNEEFEEGAEFIEPDDGERLSC--VFQEVLIAPKRNSNLQRHCLFKTRCTVS 61
           +D+  Y  D  E   G      DDGE LSC  V   +L+APK+    Q H +F+TRCTV+
Sbjct: 214 KDETAYTYDKNEIIRG------DDGELLSCSLVVHRLLLAPKQTDQSQHHNIFRTRCTVN 273

Query: 62  GKVCNVIIDNGSRENFVSKKLVTALNLKVEAHPSPYKIGWVKK 103
            KVC+VIID+GS EN VSK +VT L LK E HPSPYKIGW+K+
Sbjct: 274 RKVCDVIIDSGSSENIVSKNMVTKLGLKTEKHPSPYKIGWIKQ 310

[Close]
BLAST of MELO3C014845T1 vs. TrEMBL
Match: M5WCC7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017790mg PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.5e-18
Identity = 50/99 (50.51%), Postives = 67/99 (67.68%), Query Frame = 1 

Query: 8   EEDNEEFEE----GAEFIEPDDGERLSCVFQEVLIAPKRNSNLQRHCLFKTRCTVSGKVC 67
           +E+N+E  E    GAEF   +  E+++ V Q VL+AP+     QRH +F++ C++  KVC
Sbjct: 379 DEENDEVGENDYAGAEFAVEEGMEKITLVLQRVLLAPREEG--QRHSIFRSLCSIKNKVC 438

Query: 68  NVIIDNGSRENFVSKKLVTALNLKVEAHPSPYKIGWVKK 103
           +VI+DNGS ENFVSKKLV  L L  E H SPY +GWVKK
Sbjct: 439 DVIVDNGSCENFVSKKLVEYLQLSTEPHVSPYSLGWVKK 475

[Close]
BLAST of MELO3C014845T1 vs. TrEMBL
Match: M5W531_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026856mg PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.5e-18
Identity = 50/101 (49.50%), Postives = 66/101 (65.35%), Query Frame = 1 

Query: 2   EDKEVYEEDNEEFEEGAEFIEPDDGERLSCVFQEVLIAPKRNSNLQRHCLFKTRCTVSGK 61
           ++ E  +E  E    GAEF   +  E+++ V Q VL+APK     QRH +F++ C++  K
Sbjct: 388 DEDEEKDEVGENDYAGAEFAVEEGIEKITLVLQRVLLAPKEEG--QRHNIFRSLCSIKNK 447

Query: 62  VCNVIIDNGSRENFVSKKLVTALNLKVEAHPSPYKIGWVKK 103
           VC+VI+DNGS ENFVSKKLV  L L  E H SPY +GWVKK
Sbjct: 448 VCDVIVDNGSCENFVSKKLVEYLQLSTEPHVSPYSLGWVKK 486

[Close]
BLAST of MELO3C014845T1 vs. TrEMBL
Match: M5XJ91_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021778mg PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 3.3e-18
Identity = 50/99 (50.51%), Postives = 67/99 (67.68%), Query Frame = 1 

Query: 8   EEDNEEFEE----GAEFIEPDDGERLSCVFQEVLIAPKRNSNLQRHCLFKTRCTVSGKVC 67
           +E+N+E  E    GAEF   +  E+++ V Q VL+APK     QRH +F++ C++  KVC
Sbjct: 383 DEENDEVGENDYAGAEFAVEEGMEKITLVLQRVLLAPKEEG--QRHSIFRSLCSIKNKVC 442

Query: 68  NVIIDNGSRENFVSKKLVTALNLKVEAHPSPYKIGWVKK 103
           +VI+DNGS ENFVSKKLV  L L  E H SPY +GWV+K
Sbjct: 443 DVIVDNGSCENFVSKKLVEYLQLLTEPHVSPYSLGWVQK 479

[Close]
BLAST of MELO3C014845T1 vs. NCBI nr
Match: gi|778664952|ref|XP_011648447.1| (PREDICTED: uncharacterized protein LOC105434464 [Cucumis sativus])

HSP 1 Score: 139.8 bits (351), Expect = 3.2e-30
Identity = 68/111 (61.26%), Postives = 80/111 (72.07%), Query Frame = 1 

Query: 2   EDKEVYEEDNEEFEEGAEFIEPDDGERLSCVFQEVLIAPKRNSNLQRHCLFKTRCTVSGK 61
           E+     ED++  E+  E IE DDGER+SCV Q VLI PK    LQRHCLFKTRCT++G+
Sbjct: 179 EEGRQMSEDSKGAEDEIELIEADDGERVSCVIQRVLITPKEEKKLQRHCLFKTRCTINGR 238

Query: 62  VCNVIIDN----------GSRENFVSKKLVTALNLKVEAHPSPYKIGWVKK 103
           VC+VIIDN          GS ENFV+KKLVT LNLK EAHP+PYKIGWV+K
Sbjct: 239 VCDVIIDNDSSSDVIIDSGSSENFVAKKLVTVLNLKAEAHPNPYKIGWVRK 289

[Close]
BLAST of MELO3C014845T1 vs. NCBI nr
Match: gi|659102468|ref|XP_008452148.1| (PREDICTED: uncharacterized protein LOC103493250 [Cucumis melo])

HSP 1 Score: 137.1 bits (344), Expect = 2.1e-29
Identity = 64/102 (62.75%), Postives = 81/102 (79.41%), Query Frame = 1 

Query: 2   EDKEVY-EEDNEEFEEGAEFIEPDDGERLSCVFQEVLIAPKRNSNLQRHCLFKTRCTVSG 61
           ED++ Y  E ++E EE  E IE D+G+R+SC+ Q VLI  K   N QRH LFKTRCT++G
Sbjct: 134 EDEDTYMSETDKEEEEETELIEADNGDRISCIVQRVLITLKEERNPQRHSLFKTRCTING 193

Query: 62  KVCNVIIDNGSRENFVSKKLVTALNLKVEAHPSPYKIGWVKK 103
           KVC+VIID+GS ENFV++KLVT+LNLK++ HP PYKIGWVKK
Sbjct: 194 KVCDVIIDSGSSENFVARKLVTSLNLKIDPHPDPYKIGWVKK 235

[Close]
BLAST of MELO3C014845T1 vs. NCBI nr
Match: gi|659125686|ref|XP_008462813.1| (PREDICTED: uncharacterized protein LOC103501094 [Cucumis melo])

HSP 1 Score: 131.3 bits (329), Expect = 1.1e-27
Identity = 63/102 (61.76%), Postives = 77/102 (75.49%), Query Frame = 1 

Query: 2   EDKEVYEEDNEEFEEGAEFIEPDDGERLSCVFQEVLIAPK-RNSNLQRHCLFKTRCTVSG 61
           ED++V EE    F++  E +EPD+GE LSCV Q VLIAPK +NS+  RH L  TRCT+  
Sbjct: 68  EDEDVAEEQEGNFDQDEEILEPDEGETLSCVLQRVLIAPKNKNSHQHRHSLSMTRCTIQS 127

Query: 62  KVCNVIIDNGSRENFVSKKLVTALNLKVEAHPSPYKIGWVKK 103
           KVCN+IID+GS ENFVSKKLVTAL LK E H +PY+I W+KK
Sbjct: 128 KVCNMIIDSGSSENFVSKKLVTALKLKTEPHSNPYEIEWIKK 169

[Close]
BLAST of MELO3C014845T1 vs. NCBI nr
Match: gi|147812164|emb|CAN70290.1| (hypothetical protein VITISV_019345 [Vitis vinifera])

HSP 1 Score: 115.9 bits (289), Expect = 4.9e-23
Identity = 55/101 (54.46%), Postives = 72/101 (71.29%), Query Frame = 1 

Query: 2   EDKEVYEEDNEEFEEGAEFIEPDDGERLSCVFQEVLIAPKRNSNLQRHCLFKTRCTVSGK 61
           E++ V EED     EG EF E D GE ++C+ Q +L+  K++ + QRH +F+T+CT+  K
Sbjct: 701 EEERVLEED---IYEGVEFAEGDVGEEVTCIVQRLLLTLKKSDDSQRHKIFRTQCTIRNK 760

Query: 62  VCNVIIDNGSRENFVSKKLVTALNLKVEAHPSPYKIGWVKK 103
           VCNVIID+GS ENFVSK LV ALNLK + HPS YKI W+ K
Sbjct: 761 VCNVIIDSGSSENFVSKALVKALNLKTKEHPSSYKIAWINK 798

[Close]
BLAST of MELO3C014845T1 vs. NCBI nr
Match: gi|778708521|ref|XP_011656222.1| (PREDICTED: uncharacterized protein LOC105435678 [Cucumis sativus])

HSP 1 Score: 112.5 bits (280), Expect = 5.5e-22
Identity = 57/101 (56.44%), Postives = 72/101 (71.29%), Query Frame = 1 

Query: 2   EDKEVYEEDNEEFEEGAEFIEPDDGERLSCVFQEVLIAPKRNSNLQRHCLFKTRCTVSGK 61
           E+  +  ED  E EE  E I+ ++ + +S V  +V IAPK   N QRH LFK RCT++GK
Sbjct: 65  EEGNLLGEDELEPEEETEEIKANERDTVSYVIHKVRIAPKEEKNPQRHNLFKARCTINGK 124

Query: 62  VCNVIIDNGSRENFVSKKLVTALNLKVEAHPSPYKIGWVKK 103
           V +VIID  S ENFV+KK+V+ LNLKVE HP+PYKIGWVKK
Sbjct: 125 VFDVIIDGVSSENFVAKKIVSNLNLKVEPHPNPYKIGWVKK 165

The following BLAST results are available for this feature:
BLAST of MELO3C014845T1 vs. TrEMBL
Match NameE-valueIdentityDescription
A5BLC8_VITVI3.4e-2354.46Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019345 PE=4 SV=1[more]
U7E091_POPTR4.2e-2153.40Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0229s00250g PE=4 SV=1[more]
M5WCC7_PRUPE1.5e-1850.51Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017790mg PE=4 SV=1[more]
M5W531_PRUPE2.5e-1849.50Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026856mg PE=4 SV=1[more]
M5XJ91_PRUPE3.3e-1850.51Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021778mg PE=4 SV=1[more]
BLAST of MELO3C014845T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778664952|ref|XP_011648447.1|3.2e-3061.26PREDICTED: uncharacterized protein LOC105434464 [Cucumis sativus][more]
gi|659102468|ref|XP_008452148.1|2.1e-2962.75PREDICTED: uncharacterized protein LOC103493250 [Cucumis melo][more]
gi|659125686|ref|XP_008462813.1|1.1e-2761.76PREDICTED: uncharacterized protein LOC103501094 [Cucumis melo][more]
gi|147812164|emb|CAN70290.1|4.9e-2354.46hypothetical protein VITISV_019345 [Vitis vinifera][more]
gi|778708521|ref|XP_011656222.1|5.5e-2256.44PREDICTED: uncharacterized protein LOC105435678 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005488 binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C014845MELO3C014845gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C014845T1MELO3C014845T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C014845T1.cds1MELO3C014845T1.cds1CDS