MELO3C014845 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C014845
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Retrotransposon protein, putative, Ty3-gypsy subclass
Location	chr6 : 21011804 .. 21012175 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGATAAAGAAGTTTATGAGGAAGACAATGAAGAATTTGAAGAAGGAGCTGAATTTATTGAACCAGATGATGGAGAGAGGCTATCTTGTGTTTTCCAAGAGGTGCTAATTGCTCCTAAAAGGAACTCCAACCTTCAAAGACATTGCCTCTTCAAGACAAGGTGCACGGTTAGTGGGAAAGTGTGCAATGTGATTATAGACAATGGAAGTAGAGAGAACTTCGTTTCTAAGAAGCTAGTAACAGCCTTGAACCTCAAGGTGGAAGCTCATCCAAGTCCTTACAAGATCGGTTGGGTGAAGAAAACTGAAGCACAAATGAAATTTAGACCATTTCCCTTTCAATTGGAAGTAGCAACAAGAACCAAATAG

mRNA sequence

ATGGAAGATAAAGAAGTTTATGAGGAAGACAATGAAGAATTTGAAGAAGGAGCTGAATTTATTGAACCAGATGATGGAGAGAGGCTATCTTGTGTTTTCCAAGAGGTGCTAATTGCTCCTAAAAGGAACTCCAACCTTCAAAGACATTGCCTCTTCAAGACAAGGTGCACGGTTAGTGGGAAAGTGTGCAATGTGATTATAGACAATGGAAGTAGAGAGAACTTCGTTTCTAAGAAGCTAGTAACAGCCTTGAACCTCAAGGTGGAAGCTCATCCAAGTCCTTACAAGATCGGTTGGGTGAAGAAAACTGAAGCACAAATGAAATTTAGACCATTTCCCTTTCAATTGGAAGTAGCAACAAGAACCAAATAG

Coding sequence (CDS)

ATGGAAGATAAAGAAGTTTATGAGGAAGACAATGAAGAATTTGAAGAAGGAGCTGAATTTATTGAACCAGATGATGGAGAGAGGCTATCTTGTGTTTTCCAAGAGGTGCTAATTGCTCCTAAAAGGAACTCCAACCTTCAAAGACATTGCCTCTTCAAGACAAGGTGCACGGTTAGTGGGAAAGTGTGCAATGTGATTATAGACAATGGAAGTAGAGAGAACTTCGTTTCTAAGAAGCTAGTAACAGCCTTGAACCTCAAGGTGGAAGCTCATCCAAGTCCTTACAAGATCGGTTGGGTGAAGAAAACTGAAGCACAAATGAAATTTAGACCATTTCCCTTTCAATTGGAAGTAGCAACAAGAACCAAATAG

Protein sequence

MEDKEVYEEDNEEFEEGAEFIEPDDGERLSCVFQEVLIAPKRNSNLQRHCLFKTRCTVSGKVCNVIIDNGSRENFVSKKLVTALNLKVEAHPSPYKIGWVKKTEAQMKFRPFPFQLEVATRTK*

Homology

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BLAST of MELO3C014845 vs. TrEMBL
Match: A5BLC8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019345 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.4e-23
Identity = 55/101 (54.46%), Postives = 72/101 (71.29%), Query Frame = 1


Query: 2   EDKEVYEEDNEEFEEGAEFIEPDDGERLSCVFQEVLIAPKRNSNLQRHCLFKTRCTVSGK 61
           E++ V EED     EG EF E D GE ++C+ Q +L+  K++ + QRH +F+T+CT+  K
Sbjct: 701 EEERVLEED---IYEGVEFAEGDVGEEVTCIVQRLLLTLKKSDDSQRHKIFRTQCTIRNK 760

Query: 62  VCNVIIDNGSRENFVSKKLVTALNLKVEAHPSPYKIGWVKK 103
           VCNVIID+GS ENFVSK LV ALNLK + HPS YKI W+ K
Sbjct: 761 VCNVIIDSGSSENFVSKALVKALNLKTKEHPSSYKIAWINK 798

[Close]

BLAST of MELO3C014845 vs. TrEMBL
Match: U7E091_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0229s00250g PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 4.2e-21
Identity = 55/103 (53.40%), Postives = 68/103 (66.02%), Query Frame = 1


Query: 2   EDKEVYEEDNEEFEEGAEFIEPDDGERLSC--VFQEVLIAPKRNSNLQRHCLFKTRCTVS 61
           +D+  Y  D  E   G      DDGE LSC  V   +L+APK+    Q H +F+TRCTV+
Sbjct: 214 KDETAYTYDKNEIIRG------DDGELLSCSLVVHRLLLAPKQTDQSQHHNIFRTRCTVN 273

Query: 62  GKVCNVIIDNGSRENFVSKKLVTALNLKVEAHPSPYKIGWVKK 103
            KVC+VIID+GS EN VSK +VT L LK E HPSPYKIGW+K+
Sbjct: 274 RKVCDVIIDSGSSENIVSKNMVTKLGLKTEKHPSPYKIGWIKQ 310

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BLAST of MELO3C014845 vs. TrEMBL
Match: M5WCC7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017790mg PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.5e-18
Identity = 50/99 (50.51%), Postives = 67/99 (67.68%), Query Frame = 1


Query: 8   EEDNEEFEE----GAEFIEPDDGERLSCVFQEVLIAPKRNSNLQRHCLFKTRCTVSGKVC 67
           +E+N+E  E    GAEF   +  E+++ V Q VL+AP+     QRH +F++ C++  KVC
Sbjct: 379 DEENDEVGENDYAGAEFAVEEGMEKITLVLQRVLLAPREEG--QRHSIFRSLCSIKNKVC 438

Query: 68  NVIIDNGSRENFVSKKLVTALNLKVEAHPSPYKIGWVKK 103
           +VI+DNGS ENFVSKKLV  L L  E H SPY +GWVKK
Sbjct: 439 DVIVDNGSCENFVSKKLVEYLQLSTEPHVSPYSLGWVKK 475

[Close]

BLAST of MELO3C014845 vs. TrEMBL
Match: M5W531_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026856mg PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.5e-18
Identity = 50/101 (49.50%), Postives = 66/101 (65.35%), Query Frame = 1


Query: 2   EDKEVYEEDNEEFEEGAEFIEPDDGERLSCVFQEVLIAPKRNSNLQRHCLFKTRCTVSGK 61
           ++ E  +E  E    GAEF   +  E+++ V Q VL+APK     QRH +F++ C++  K
Sbjct: 388 DEDEEKDEVGENDYAGAEFAVEEGIEKITLVLQRVLLAPKEEG--QRHNIFRSLCSIKNK 447

Query: 62  VCNVIIDNGSRENFVSKKLVTALNLKVEAHPSPYKIGWVKK 103
           VC+VI+DNGS ENFVSKKLV  L L  E H SPY +GWVKK
Sbjct: 448 VCDVIVDNGSCENFVSKKLVEYLQLSTEPHVSPYSLGWVKK 486

[Close]

BLAST of MELO3C014845 vs. TrEMBL
Match: M5XJ91_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021778mg PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 3.3e-18
Identity = 50/99 (50.51%), Postives = 67/99 (67.68%), Query Frame = 1


Query: 8   EEDNEEFEE----GAEFIEPDDGERLSCVFQEVLIAPKRNSNLQRHCLFKTRCTVSGKVC 67
           +E+N+E  E    GAEF   +  E+++ V Q VL+APK     QRH +F++ C++  KVC
Sbjct: 383 DEENDEVGENDYAGAEFAVEEGMEKITLVLQRVLLAPKEEG--QRHSIFRSLCSIKNKVC 442

Query: 68  NVIIDNGSRENFVSKKLVTALNLKVEAHPSPYKIGWVKK 103
           +VI+DNGS ENFVSKKLV  L L  E H SPY +GWV+K
Sbjct: 443 DVIVDNGSCENFVSKKLVEYLQLLTEPHVSPYSLGWVQK 479

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BLAST of MELO3C014845 vs. NCBI nr
Match: gi|778664952|ref|XP_011648447.1| (PREDICTED: uncharacterized protein LOC105434464 [Cucumis sativus])

HSP 1 Score: 139.8 bits (351), Expect = 3.2e-30
Identity = 68/111 (61.26%), Postives = 80/111 (72.07%), Query Frame = 1


Query: 2   EDKEVYEEDNEEFEEGAEFIEPDDGERLSCVFQEVLIAPKRNSNLQRHCLFKTRCTVSGK 61
           E+     ED++  E+  E IE DDGER+SCV Q VLI PK    LQRHCLFKTRCT++G+
Sbjct: 179 EEGRQMSEDSKGAEDEIELIEADDGERVSCVIQRVLITPKEEKKLQRHCLFKTRCTINGR 238

Query: 62  VCNVIIDN----------GSRENFVSKKLVTALNLKVEAHPSPYKIGWVKK 103
           VC+VIIDN          GS ENFV+KKLVT LNLK EAHP+PYKIGWV+K
Sbjct: 239 VCDVIIDNDSSSDVIIDSGSSENFVAKKLVTVLNLKAEAHPNPYKIGWVRK 289

[Close]

BLAST of MELO3C014845 vs. NCBI nr
Match: gi|659102468|ref|XP_008452148.1| (PREDICTED: uncharacterized protein LOC103493250 [Cucumis melo])

HSP 1 Score: 137.1 bits (344), Expect = 2.1e-29
Identity = 64/102 (62.75%), Postives = 81/102 (79.41%), Query Frame = 1


Query: 2   EDKEVY-EEDNEEFEEGAEFIEPDDGERLSCVFQEVLIAPKRNSNLQRHCLFKTRCTVSG 61
           ED++ Y  E ++E EE  E IE D+G+R+SC+ Q VLI  K   N QRH LFKTRCT++G
Sbjct: 134 EDEDTYMSETDKEEEEETELIEADNGDRISCIVQRVLITLKEERNPQRHSLFKTRCTING 193

Query: 62  KVCNVIIDNGSRENFVSKKLVTALNLKVEAHPSPYKIGWVKK 103
           KVC+VIID+GS ENFV++KLVT+LNLK++ HP PYKIGWVKK
Sbjct: 194 KVCDVIIDSGSSENFVARKLVTSLNLKIDPHPDPYKIGWVKK 235

[Close]

BLAST of MELO3C014845 vs. NCBI nr
Match: gi|659125686|ref|XP_008462813.1| (PREDICTED: uncharacterized protein LOC103501094 [Cucumis melo])

HSP 1 Score: 131.3 bits (329), Expect = 1.1e-27
Identity = 63/102 (61.76%), Postives = 77/102 (75.49%), Query Frame = 1


Query: 2   EDKEVYEEDNEEFEEGAEFIEPDDGERLSCVFQEVLIAPK-RNSNLQRHCLFKTRCTVSG 61
           ED++V EE    F++  E +EPD+GE LSCV Q VLIAPK +NS+  RH L  TRCT+  
Sbjct: 68  EDEDVAEEQEGNFDQDEEILEPDEGETLSCVLQRVLIAPKNKNSHQHRHSLSMTRCTIQS 127

Query: 62  KVCNVIIDNGSRENFVSKKLVTALNLKVEAHPSPYKIGWVKK 103
           KVCN+IID+GS ENFVSKKLVTAL LK E H +PY+I W+KK
Sbjct: 128 KVCNMIIDSGSSENFVSKKLVTALKLKTEPHSNPYEIEWIKK 169

[Close]

BLAST of MELO3C014845 vs. NCBI nr
Match: gi|147812164|emb|CAN70290.1| (hypothetical protein VITISV_019345 [Vitis vinifera])

HSP 1 Score: 115.9 bits (289), Expect = 4.9e-23
Identity = 55/101 (54.46%), Postives = 72/101 (71.29%), Query Frame = 1


Query: 2   EDKEVYEEDNEEFEEGAEFIEPDDGERLSCVFQEVLIAPKRNSNLQRHCLFKTRCTVSGK 61
           E++ V EED     EG EF E D GE ++C+ Q +L+  K++ + QRH +F+T+CT+  K
Sbjct: 701 EEERVLEED---IYEGVEFAEGDVGEEVTCIVQRLLLTLKKSDDSQRHKIFRTQCTIRNK 760

Query: 62  VCNVIIDNGSRENFVSKKLVTALNLKVEAHPSPYKIGWVKK 103
           VCNVIID+GS ENFVSK LV ALNLK + HPS YKI W+ K
Sbjct: 761 VCNVIIDSGSSENFVSKALVKALNLKTKEHPSSYKIAWINK 798

[Close]

BLAST of MELO3C014845 vs. NCBI nr
Match: gi|778708521|ref|XP_011656222.1| (PREDICTED: uncharacterized protein LOC105435678 [Cucumis sativus])

HSP 1 Score: 112.5 bits (280), Expect = 5.5e-22
Identity = 57/101 (56.44%), Postives = 72/101 (71.29%), Query Frame = 1


Query: 2   EDKEVYEEDNEEFEEGAEFIEPDDGERLSCVFQEVLIAPKRNSNLQRHCLFKTRCTVSGK 61
           E+  +  ED  E EE  E I+ ++ + +S V  +V IAPK   N QRH LFK RCT++GK
Sbjct: 65  EEGNLLGEDELEPEEETEEIKANERDTVSYVIHKVRIAPKEEKNPQRHNLFKARCTINGK 124

Query: 62  VCNVIIDNGSRENFVSKKLVTALNLKVEAHPSPYKIGWVKK 103
           V +VIID  S ENFV+KK+V+ LNLKVE HP+PYKIGWVKK
Sbjct: 125 VFDVIIDGVSSENFVAKKIVSNLNLKVEPHPNPYKIGWVKK 165

The following BLAST results are available for this feature:

BLAST of MELO3C014845 vs. TrEMBL


Match Name	E-value	Identity	Description
A5BLC8_VITVI	3.4e-23	54.46	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019345 PE=4 SV=1	[more]
U7E091_POPTR	4.2e-21	53.40	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0229s00250g PE=4 SV=1	[more]
M5WCC7_PRUPE	1.5e-18	50.51	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017790mg PE=4 SV=1	[more]
M5W531_PRUPE	2.5e-18	49.50	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026856mg PE=4 SV=1	[more]
M5XJ91_PRUPE	3.3e-18	50.51	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021778mg PE=4 SV=1	[more]

BLAST of MELO3C014845 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778664952\|ref\|XP_011648447.1\|	3.2e-30	61.26	PREDICTED: uncharacterized protein LOC105434464 [Cucumis sativus]	[more]
gi\|659102468\|ref\|XP_008452148.1\|	2.1e-29	62.75	PREDICTED: uncharacterized protein LOC103493250 [Cucumis melo]	[more]
gi\|659125686\|ref\|XP_008462813.1\|	1.1e-27	61.76	PREDICTED: uncharacterized protein LOC103501094 [Cucumis melo]	[more]
gi\|147812164\|emb\|CAN70290.1\|	4.9e-23	54.46	hypothetical protein VITISV_019345 [Vitis vinifera]	[more]
gi\|778708521\|ref\|XP_011656222.1\|	5.5e-22	56.44	PREDICTED: uncharacterized protein LOC105435678 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005488	binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C014845T1	MELO3C014845T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C014845	Watermelon (97103) v2	mewmbB434
MELO3C014845	Watermelon (97103) v2	mewmbB446
MELO3C014845	Wax gourd	mewgoB532
MELO3C014845	Melon (DHL92) v3.5.1	memeB112
MELO3C014845	Cucumber (Gy14) v1	cgymeB260
MELO3C014845	Cucurbita maxima (Rimu)	cmameB137
MELO3C014845	Cucurbita maxima (Rimu)	cmameB237
MELO3C014845	Cucurbita moschata (Rifu)	cmomeB129
MELO3C014845	Cucurbita moschata (Rifu)	cmomeB225
MELO3C014845	Wild cucumber (PI 183967)	cpimeB079
MELO3C014845	Wild cucumber (PI 183967)	cpimeB244
MELO3C014845	Cucumber (Chinese Long) v2	cumeB078
MELO3C014845	Cucumber (Chinese Long) v2	cumeB245
MELO3C014845	Watermelon (Charleston Gray)	mewcgB427
MELO3C014845	Watermelon (Charleston Gray)	mewcgB439
MELO3C014845	Watermelon (97103) v1	mewmB485
MELO3C014845	Cucurbita pepo (Zucchini)	cpemeB582
MELO3C014845	Cucurbita pepo (Zucchini)	cpemeB640
MELO3C014845	Bottle gourd (USVL1VR-Ls)	lsimeB368
MELO3C014845	Bottle gourd (USVL1VR-Ls)	lsimeB421
MELO3C014845	Cucumber (Gy14) v2	cgybmeB213
MELO3C014845	Silver-seed gourd	carmeB0373
MELO3C014845	Silver-seed gourd	carmeB0444
MELO3C014845	Cucumber (Chinese Long) v3	cucmeB084
MELO3C014845	Cucumber (Chinese Long) v3	cucmeB250