MELO3C014562T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C014562T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	RING finger-like protein
Location	chr5 : 1370210 .. 1373585 (+)
Sequence length	1314

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTTTCTCGTCAAGAACTCCTAGATCGCGAGTAGAGAATATTCTCGAGCATCGTTTTCTTTTCTTCTGGTTCAGAATAATTCCTTCAGCATCTCTTTTCATCTCAAGTTTTTGATTGATTTGTGCTGAACAACAACTATTTGGGGTTCTTGTGTAATTTAAGAGCGAGGAAGATCGGAAAGACAAACCCTCGTGTACTCGCTATGTCTTCTTCCGGAATCTCTTCCCAAAGCTCCCAATTGACAGATGCGGTTCAAGGACTAGTTCTTAGCGATCAGGTTTTATTATTTATCTATTCATTTTCGGAGTTGATGTACTTTTACGCGCTTTCTTTATTTAAGAGAATCTGAGGTGTGTGAGAAATGGTTGTTTTTCGATTTGTGTTGATAGTTCTTATTGGAAGTATTGGTGTTCTCAAATCTGAAATTGTTGATTTAGTCTTGGTGTCATTTGCTTTTCAAGATTTGCGTTTCTTGGGGGCTAATTAAATGAGTCAGAGATTGTTGGGTTAGTCTTGTTTTTTTCATCGTCTAGATTATGGACGTCGGGGATTGTTTTCTGCGTTTTGATGTCTAGAGGAAAATGGTTCAATCGAATTGAATATCATAATAATCTGTTCATGTTCACCCGTTTGTCAGTAATTGTTGTTTTTCTTTTGCGAATTTGGTCGGTCGCGTGTGAATAATTTTATTTATTCTTTAAAGAAGATTGATTTTTCCTCTATTTCAGTTCGAGTTGCATTACCATGATTTTGTCCAAGTGTCTGTTTTCTGACTTTCTGGATTTGTATGTTTAGTTGGAAATGTAGATCTTTCTTGTTCTGGTTCAGAATAATTCTTTAGTCTCTCCTTTTTTCTTTAGTTTTGATTTGTGCTGAACAACTGTTCGGGTTCTGTGTTTTTTAGAGCGATAAAGATCGGAGGGTTATGACAACTTCTTCCGGAATCTCTATCCAGAGCGCTGAAATTTCAGATGCCGTTCAAGAACAAGTAACTTGCCACCAGGTTTTTTCTATCTATTCATTTTCGATGTCGATCTACTTTCAAGCACTTTCCTTTTTCTAGAGAATCAGGGGCGTAAAACTGTGGTAGGAAATGATTGTCTACAATTTGTTTTGCTAGTTCTTATGGGAAATATAGTGAATCTGAAACCGTTAATCTAGTTAGTTTTGTTGCCATTTGTTTTTTCTAGATCTGTAACCGTTGGGTTGATCATGTTTCTTTCATTGTCAAGATTGTGGATATCAGGCCCTGCGATATAATATCTAGGGAGAATATGGTTTTGAATTGAATTTTAGATTGGTTGAATGGCTATGAGGAATCATAAAAAGCAGGAACTATTGCTTATGTTCATCTTGTTTTTCTCTTGCGTTGGTTTGTCACCTGTGTTTGTTTTTCTTTATTCTATCAGGAAGATTTCCTCTCTTTCAGTTAGAGCTGCATTTCTATGATTCTGTTTGATTGCTTGTTTTAGAATATTGAATATTCTCTGCATGCTTCAAGGATTTCTTATTTTGTGGATTTGTATGTTCAGTTGGAAATGGGAAAGAAAGTAGAGATTCAAGGAACGGGGCATGGTAGTCACGATGGGGCTTGTGCAATTTGCTTGAATAAGATAGCACTTCAAGAAACTGCTTTAGTAAGAGGCTGTGAGCACGCCTATTGGTTTGTTCCTATCGATTCATCTTTCGTCTACTTATAAATATTTTCTATAGCATGACTTATTCATTTCGTTGTCGCTCTATGCTTGTATTGGAGATGGAGTTTTAAGTTGTTGCGAACGTATTCCTGGGAGTCCGCTAAACTTTGTAGGAGAAAATTCACTGTATCCATATTGCCTTTGGTGCAATGTTTCTAATTGTACTTGAGGTTGCTCGGATTTAATTGGAAGAGGTATGCTGTTTTAGATTTATAACCAAAACATCTTGGAGTTAGGGAATTGTATGGTATGGAGTCATATCGATAATTTGTTGTTATTTGAAAGAAAGATATATCATAAACTATCCGAAGTCAGAGTTAAGTCTTGTCTTATATAGTTTATTGGTAGTTGAACTTAAAATGCTTGGTGGTATTTGGACCAAATTAGACTGACAACCGCCGGTTAATTATTATGACATATGATGGACACACTCTAAATATGACACATATCAAACACCGTGTTGAATATTTGATGGGATGGGTACAAAGTACAATAGACACAAAGCACATATTGGAACAATTATTAGGCATTTGGATATCTCCGAATTCGGCAGAGATGGCATGTCGCGTATGCTTCTTTTTTGGAAGCGAGTTACCCTTTCAGCTCTTCCAAATTATGAATTTTCGATGCATGTTATAGTTGTATGTTTTGGCTTTATTTTATTTTATTTAGTCTTTCATTTACTTTCTTGAAGTGCAACTTGCATCCTTCGATGGGCCTCATACACTCAAAAGCCGACTTGTCCACAATGTAAACATCCATTTGAGTTCCTGATCGTTCATCGTTCTCTTGATGGGAGGTTTGTCCATTCATTATTCTCGGGAGATCTTTTGTAGATTTAGTTTAGATTTGAACCATTGTTTTAAATTACCGTTCTTATTAAATATTGCCTTTGCATTGTTAGCATCCACGACTACATGTTTGAGGAGAGTGTATGCCTGCTTCTGAGAGCTTCGTGGTATAAACCTCTAATCTTTGAAGAACGGGAGGAAACGTATGATGAGCCTGAGGACGACCAATACTATCATTATGAGGATGATGATGAAGAGTTAGAGGATGCCTACCTGGGTGAATCACCATCTCTCCGCATCGGGAATCGAAGGTGGGGATACAATGGTTACGTGAGGGCAGGTAGACAGGAAGCCCGACCAGTTCTTAGGCAGGAGTTTACTGGAGGACCAAGTTCATCGAGGGATCCCGTAACAAAACAGGCCTCCAAAGACAAAACAGGTCGACGTGCTAAAAGGGCCTTGAAACGGGAAGCAGCAGATAAGGCTGCAGCCGCCAAGCATCAAGAACATCTGGCTAGGTTTGGCCGGAAGTGATTTTTATATTTAAAACTTCTGTACATAACTAAGCTCTTTTCTTTTCTATGTGTACAGCTCTTTGATTCAATCTTCTTTTCCTTAGCCAATGTGCCTTGCTAAAAGGCTGGTGGCTCCCAATGAAAAACTAAGATAGAGATCATACATGCTGACAAGGGCGGCGTACATGGCAGCGCCTGCAGAATTCTTTGTACAAAACTTTGGATCTCAAAATCATTCGTAAAAGAATTATTAGGAGTTAGCGCTGTAAGTTTCATGTATTGAAACTTTCCAGAACAAACTAGGCGATGAACATATTTGTTATTGTTGTAGCTACTTGTAGTACATCTAATAAAATTTGTCTTTTCAGGAG

mRNA sequence

AAATTTTCTCGTCAAGAACTCCTAGATCGCGAGTAGAGAATATTCTCGAGCATCGTTTTCTTTTCTTCTGGTTCAGAATAATTCCTTCAGCATCTCTTTTCATCTCAAGTTTTTGATTGATTTGTGCTGAACAACAACTATTTGGGGTTCTTGTGTAATTTAAGAGCGAGGAAGATCGGAAAGACAAACCCTCGTGTACTCGCTATGTCTTCTTCCGGAATCTCTTCCCAAAGCTCCCAATTGACAGATGCGGTTCAAGGACTAGTTCTTAGCGATCAGAGCGATAAAGATCGGAGGGTTATGACAACTTCTTCCGGAATCTCTATCCAGAGCGCTGAAATTTCAGATGCCGTTCAAGAACAAGTAACTTGCCACCAGTTGGAAATGGGAAAGAAAGTAGAGATTCAAGGAACGGGGCATGGTAGTCACGATGGGGCTTGTGCAATTTGCTTGAATAAGATAGCACTTCAAGAAACTGCTTTAGTAAGAGGCTGTGAGCACGCCTATTGTGCAACTTGCATCCTTCGATGGGCCTCATACACTCAAAAGCCGACTTGTCCACAATGTAAACATCCATTTGAGTTCCTGATCGTTCATCGTTCTCTTGATGGGAGCATCCACGACTACATGTTTGAGGAGAGTGTATGCCTGCTTCTGAGAGCTTCGTGGTATAAACCTCTAATCTTTGAAGAACGGGAGGAAACGTATGATGAGCCTGAGGACGACCAATACTATCATTATGAGGATGATGATGAAGAGTTAGAGGATGCCTACCTGGGTGAATCACCATCTCTCCGCATCGGGAATCGAAGGTGGGGATACAATGGTTACGTGAGGGCAGGTAGACAGGAAGCCCGACCAGTTCTTAGGCAGGAGTTTACTGGAGGACCAAGTTCATCGAGGGATCCCGTAACAAAACAGGCCTCCAAAGACAAAACAGGTCGACGTGCTAAAAGGGCCTTGAAACGGGAAGCAGCAGATAAGGCTGCAGCCGCCAAGCATCAAGAACATCTGGCTAGCTCTTTGATTCAATCTTCTTTTCCTTAGCCAATGTGCCTTGCTAAAAGGCTGGTGGCTCCCAATGAAAAACTAAGATAGAGATCATACATGCTGACAAGGGCGGCGTACATGGCAGCGCCTGCAGAATTCTTTGTACAAAACTTTGGATCTCAAAATCATTCGTAAAAGAATTATTAGGAGTTAGCGCTGTAAGTTTCATGTATTGAAACTTTCCAGAACAAACTAGGCGATGAACATATTTGTTATTGTTGTAGCTACTTGTAGTACATCTAATAAAATTTGTCTTTTCAGGAG

Coding sequence (CDS)

ATGTCTTCTTCCGGAATCTCTTCCCAAAGCTCCCAATTGACAGATGCGGTTCAAGGACTAGTTCTTAGCGATCAGAGCGATAAAGATCGGAGGGTTATGACAACTTCTTCCGGAATCTCTATCCAGAGCGCTGAAATTTCAGATGCCGTTCAAGAACAAGTAACTTGCCACCAGTTGGAAATGGGAAAGAAAGTAGAGATTCAAGGAACGGGGCATGGTAGTCACGATGGGGCTTGTGCAATTTGCTTGAATAAGATAGCACTTCAAGAAACTGCTTTAGTAAGAGGCTGTGAGCACGCCTATTGTGCAACTTGCATCCTTCGATGGGCCTCATACACTCAAAAGCCGACTTGTCCACAATGTAAACATCCATTTGAGTTCCTGATCGTTCATCGTTCTCTTGATGGGAGCATCCACGACTACATGTTTGAGGAGAGTGTATGCCTGCTTCTGAGAGCTTCGTGGTATAAACCTCTAATCTTTGAAGAACGGGAGGAAACGTATGATGAGCCTGAGGACGACCAATACTATCATTATGAGGATGATGATGAAGAGTTAGAGGATGCCTACCTGGGTGAATCACCATCTCTCCGCATCGGGAATCGAAGGTGGGGATACAATGGTTACGTGAGGGCAGGTAGACAGGAAGCCCGACCAGTTCTTAGGCAGGAGTTTACTGGAGGACCAAGTTCATCGAGGGATCCCGTAACAAAACAGGCCTCCAAAGACAAAACAGGTCGACGTGCTAAAAGGGCCTTGAAACGGGAAGCAGCAGATAAGGCTGCAGCCGCCAAGCATCAAGAACATCTGGCTAGCTCTTTGATTCAATCTTCTTTTCCTTAG

Protein sequence

MSSSGISSQSSQLTDAVQGLVLSDQSDKDRRVMTTSSGISIQSAEISDAVQEQVTCHQLEMGKKVEIQGTGHGSHDGACAICLNKIALQETALVRGCEHAYCATCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYKPLIFEEREETYDEPEDDQYYHYEDDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQEARPVLRQEFTGGPSSSRDPVTKQASKDKTGRRAKRALKREAADKAAAAKHQEHLASSLIQSSFP*

Homology

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BLAST of MELO3C014562T1 vs. TrEMBL
Match: A0A0A0KK15_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G431760 PE=4 SV=1)

HSP 1 Score: 520.4 bits (1339), Expect = 1.4e-144
Identity = 259/272 (95.22%), Postives = 263/272 (96.69%), Query Frame = 1


Query: 1   MSSSGISSQSSQLTDAVQGLVLSDQSDKDRRVMTTSSGISIQSAEISDAVQEQVTCHQLE 60
           MSSSGISSQSS+LTDAVQGLVL DQSDKDRR M TSSGISIQSAEISDAVQEQVTC QLE
Sbjct: 1   MSSSGISSQSSELTDAVQGLVLCDQSDKDRRAMATSSGISIQSAEISDAVQEQVTCDQLE 60

Query: 61  MGKKVEIQGTGHGSHDGACAICLNKIALQETALVRGCEHAYCATCILRWASYTQKPTCPQ 120
           MGKKVEIQGTGHGSHDGACAICLNKIALQETALVRGCEHAYCATCILRWASYT+KPTCPQ
Sbjct: 61  MGKKVEIQGTGHGSHDGACAICLNKIALQETALVRGCEHAYCATCILRWASYTKKPTCPQ 120

Query: 121 CKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYKPLIFEEREETYDEPEDDQYYHYE 180
           CKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYKP I EEREETYD+PEDDQYY YE
Sbjct: 121 CKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYKPPIIEEREETYDDPEDDQYYPYE 180

Query: 181 DDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQEARPVLRQEFTGGPSSSRDPVTKQA 240
           DDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQEARPVLRQEFT GPSSSR+PVTKQA
Sbjct: 181 DDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQEARPVLRQEFT-GPSSSREPVTKQA 240

Query: 241 -SKDKTGRRAKRALKREAADKAAAAKHQEHLA 272
            SKDKTGRRAKRALKREAADKAAAAKHQEHLA
Sbjct: 241 SSKDKTGRRAKRALKREAADKAAAAKHQEHLA 271

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BLAST of MELO3C014562T1 vs. TrEMBL
Match: M5X7I0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010547mg PE=4 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 5.0e-86
Identity = 161/241 (66.80%), Postives = 186/241 (77.18%), Query Frame = 1


Query: 33  MTTSSGISIQSAEISDAVQEQVTCHQLEMGKKVEIQGTGHGSHDGACAICLNKIALQETA 92
           MT+   +  Q   +SD +      HQ EM    +      G+H G CAICL++I LQETA
Sbjct: 1   MTSVINMDGQDQILSDLINSSTQQHQGEMQSNTDNVEKRCGNHGGVCAICLDEIMLQETA 60

Query: 93  LVRGCEHAYCATCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLR 152
           LV+GCEHAYCATCILRW +Y+QKPTCPQCKHPFEFL VHRSLDGSIHDYMFEESVCLLLR
Sbjct: 61  LVKGCEHAYCATCILRWVTYSQKPTCPQCKHPFEFLNVHRSLDGSIHDYMFEESVCLLLR 120

Query: 153 ASWYKPLIFEEREETYDEPEDDQYYHYED-DDEELEDAYLGESPSLRIGNRRWGYNGYVR 212
           A W++PLI EERE+ YD+P DD YY YED +D++L++AY   S S+RIGNRRWG NGYVR
Sbjct: 121 AKWFEPLIVEEREDVYDDP-DDYYYPYEDEEDDDLDEAYFSSSSSIRIGNRRWGDNGYVR 180

Query: 213 AGRQEARPVLRQEF-TGGPSSSRDPVTKQASKDKTGRRAKRALKREAADKAAAAKHQEHL 272
            GRQEARPV R      G SSSR+P  K+A+ DKTGRRAKRALKREAADKAAAAKHQ+HL
Sbjct: 181 GGRQEARPVNRSNIEDSGASSSREPRKKEAAMDKTGRRAKRALKREAADKAAAAKHQQHL 240

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BLAST of MELO3C014562T1 vs. TrEMBL
Match: A0A061GU17_THECC (RING/U-box superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_040934 PE=4 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 2.8e-81
Identity = 155/236 (65.68%), Postives = 182/236 (77.12%), Query Frame = 1


Query: 36  SSGISIQSAEISDAVQEQVTCHQLEMGKKVEIQGTGHGSHDGACAICLNKIALQETALVR 95
           +S I I + +I +A+       Q EM  K  +   G  +H G CAICL+KI LQETALV+
Sbjct: 2   TSVIKIDAEQIVNALPNLSLQDQKEMKNKGAVGEEGCENHSGICAICLDKIVLQETALVK 61

Query: 96  GCEHAYCATCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASW 155
           GCEHAYC TCILRWA+Y++ PTCPQCKHPFEFL VHRSLDG I+DYMFEESVCLLLRA+W
Sbjct: 62  GCEHAYCVTCILRWATYSKMPTCPQCKHPFEFLNVHRSLDGRINDYMFEESVCLLLRAAW 121

Query: 156 YKPLIFEEREETYDEPEDDQYYHYEDDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQ 215
           ++PLI E+REE YD+ ED  YY YE+DD++ ++AY   SPSLRIGNRRWG NGYVR+GRQ
Sbjct: 122 FEPLIVEDREELYDDLED--YYPYEEDDDQ-DEAYYASSPSLRIGNRRWGDNGYVRSGRQ 181

Query: 216 EARPVLRQEF-TGGPSSSRDPVTKQASKDKTGRRAKRALKREAADKAAAAKHQEHL 271
           EARPV R  F   G  SSR+P  K+ +K   GRRAKRALKREAADKAAAAKHQEHL
Sbjct: 182 EARPVQRSNFQDSGAGSSREPKKKEVAKSTMGRRAKRALKREAADKAAAAKHQEHL 234

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BLAST of MELO3C014562T1 vs. TrEMBL
Match: V4UB94_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016417mg PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 1.4e-80
Identity = 155/238 (65.13%), Postives = 177/238 (74.37%), Query Frame = 1


Query: 35  TSSGISIQSAEISDAVQEQVTCHQLEMGKKVEIQGTGHGSHDGACAICLNKIALQETALV 94
           TSS   I   E+   +       Q EM  K + +  G G+H G CAICL+K  LQETALV
Sbjct: 2   TSSVSKIDGEELVKGLDNLSISDQGEMQSKADNREMGFGNHGGVCAICLDKTVLQETALV 61

Query: 95  RGCEHAYCATCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRAS 154
           +GCEHAYCATCILRWASY + PTCPQCKHPFEFL VHRSLDGSI DYMFEESVCLLLRA+
Sbjct: 62  KGCEHAYCATCILRWASYVRNPTCPQCKHPFEFLHVHRSLDGSISDYMFEESVCLLLRAT 121

Query: 155 WYKPLIFEEREETYDEPEDDQYYHYEDDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGR 214
           W+KPLI E+     D+ EDD  Y YED++++L++ Y   S SLRIGNRRWG NGYVRAGR
Sbjct: 122 WFKPLIVEDHVVVQDDLEDD--YSYEDEEDDLDEVYFRSSSSLRIGNRRWGDNGYVRAGR 181

Query: 215 QEARPVLRQEFTG-GPSSSRDPVTKQASKDKTGRRAKRALKREAADKAAAAKHQEHLA 272
           QEARPV R      G SSSR+P  K+ +K  TGRRAKRALKREAADKAAAAKHQ+HLA
Sbjct: 182 QEARPVCRPNSQDVGASSSREPKKKEVAKVTTGRRAKRALKREAADKAAAAKHQQHLA 237

[Close]

BLAST of MELO3C014562T1 vs. TrEMBL
Match: A0A061GZE8_THECC (RING/U-box superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_040934 PE=4 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 1.8e-80
Identity = 154/236 (65.25%), Postives = 183/236 (77.54%), Query Frame = 1


Query: 36  SSGISIQSAEISDAVQEQVTCHQLEMGKKVEIQGTGHGSHDGACAICLNKIALQETALVR 95
           +S I I + +I +A+   ++    EM  K  +   G  +H G CAICL+KI LQETALV+
Sbjct: 2   TSVIKIDAEQIVNALPN-LSLQDQEMKNKGAVGEEGCENHSGICAICLDKIVLQETALVK 61

Query: 96  GCEHAYCATCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASW 155
           GCEHAYC TCILRWA+Y++ PTCPQCKHPFEFL VHRSLDG I+DYMFEESVCLLLRA+W
Sbjct: 62  GCEHAYCVTCILRWATYSKMPTCPQCKHPFEFLNVHRSLDGRINDYMFEESVCLLLRAAW 121

Query: 156 YKPLIFEEREETYDEPEDDQYYHYEDDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQ 215
           ++PLI E+REE YD+ ED  YY YE+DD++ ++AY   SPSLRIGNRRWG NGYVR+GRQ
Sbjct: 122 FEPLIVEDREELYDDLED--YYPYEEDDDQ-DEAYYASSPSLRIGNRRWGDNGYVRSGRQ 181

Query: 216 EARPVLRQEF-TGGPSSSRDPVTKQASKDKTGRRAKRALKREAADKAAAAKHQEHL 271
           EARPV R  F   G  SSR+P  K+ +K   GRRAKRALKREAADKAAAAKHQEHL
Sbjct: 182 EARPVQRSNFQDSGAGSSREPKKKEVAKSTMGRRAKRALKREAADKAAAAKHQEHL 233

[Close]

BLAST of MELO3C014562T1 vs. TAIR10
Match: AT5G19430.1 (AT5G19430.1 RING/U-box superfamily protein)

HSP 1 Score: 257.7 bits (657), Expect = 8.4e-69
Identity = 134/243 (55.14%), Postives = 168/243 (69.14%), Query Frame = 1


Query: 41  IQSAEISDAVQEQVTCHQLEMGKKVEIQGTGHGSHDGACAICLNKIALQETALVRGCEHA 100
           +   ++ D +Q+    +Q +   + EI     G+H G CAICL++I LQETA+V+GCEH 
Sbjct: 8   VSEQQVIDGIQDLALQNQDKKKIQEEIHEPSFGNHGGCCAICLSEIPLQETAMVKGCEHT 67

Query: 101 YCATCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYKPL- 160
           YC TCILRWAS  + PTCPQCKHPF+FL VHR+LDGSI D++FEESVCLLLRASW+ PL 
Sbjct: 68  YCVTCILRWASCKESPTCPQCKHPFDFLSVHRALDGSIEDFLFEESVCLLLRASWFVPLD 127

Query: 161 IFEEREETYDEPED-DQYYHYEDDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQEAR 220
           + E+   ++   +D D  Y YED+D++L++ YL  S SLRIGNRRWG NG+VR+GRQEAR
Sbjct: 128 VVEQASYSHGYHDDFDIPYDYEDEDDDLDEFYLHGS-SLRIGNRRWGGNGFVRSGRQEAR 187

Query: 221 PVLRQEFTGGPSSSRDPVTKQASKDK-------TGRRAKRALKREAADKA----AAAKHQ 271
           PV R   +G  SSS    +    KDK       TGRRAKRA+KREAA+KA    AAAKH+
Sbjct: 188 PVQRYSGSGSSSSSSSGSSSSEPKDKQVKTTNTTGRRAKRAMKREAANKAAEVTAAAKHE 247

[Close]

BLAST of MELO3C014562T1 vs. TAIR10
Match: AT5G12310.1 (AT5G12310.1 RING/U-box superfamily protein)

HSP 1 Score: 242.7 bits (618), Expect = 2.8e-64
Identity = 123/211 (58.29%), Postives = 153/211 (72.51%), Query Frame = 1


Query: 73  GSHDGACAICLNKIALQETALVRGCEHAYCATCILRWASYTQKPTCPQCKHPFEFLIVHR 132
           G+H G CAICL+ I LQETA+V+GCEHAYC TCILRWASY +KPTCPQCK PF+FL VHR
Sbjct: 37  GNHGGCCAICLDTIPLQETAMVKGCEHAYCVTCILRWASYKEKPTCPQCKLPFDFLNVHR 96

Query: 133 SLDGSIHDYMFEESVCLLLRASWYKPLIFEEREE-----TYDEPEDDQYYHYEDDDEELE 192
           +LDGS+ D+MFEESVCLLLRASW++PL   ER        YD     +Y   ++DD++L+
Sbjct: 97  ALDGSVEDFMFEESVCLLLRASWFQPLEAVERVSDNDNFNYDFDIPPEYEEEDEDDDDLD 156

Query: 193 DAYLGESPSLRIGNRRWGYNGYVRAGRQEARPVLRQEFTGGPSSSRDPVTKQASKDK--- 252
           + Y+ +  SLR+GNRRWG NG+VRAGRQEARPV + +  GG +S  +P +  + + K   
Sbjct: 157 EFYM-QGSSLRLGNRRWGDNGFVRAGRQEARPV-QHKNRGGQASGSEPASSSSCEPKEKT 216

Query: 253 ----TGRRAKRALKREAADKA----AAAKHQ 268
               TGRRAKRA+KREAA+KA    AAAKH+
Sbjct: 217 SSAITGRRAKRAMKREAANKAAEAVAAAKHE 245

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BLAST of MELO3C014562T1 vs. NCBI nr
Match: gi|659097505|ref|XP_008449663.1| (PREDICTED: uncharacterized protein LOC103491476 isoform X1 [Cucumis melo])

HSP 1 Score: 555.1 bits (1429), Expect = 7.2e-155
Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 1


Query: 1   MSSSGISSQSSQLTDAVQGLVLSDQSDKDRRVMTTSSGISIQSAEISDAVQEQVTCHQLE 60
           MSSSGISSQSSQLTDAVQGLVLSDQSDKDRRVMTTSSGISIQSAEISDAVQEQVTCHQLE
Sbjct: 1   MSSSGISSQSSQLTDAVQGLVLSDQSDKDRRVMTTSSGISIQSAEISDAVQEQVTCHQLE 60

Query: 61  MGKKVEIQGTGHGSHDGACAICLNKIALQETALVRGCEHAYCATCILRWASYTQKPTCPQ 120
           MGKKVEIQGTGHGSHDGACAICLNKIALQETALVRGCEHAYCATCILRWASYTQKPTCPQ
Sbjct: 61  MGKKVEIQGTGHGSHDGACAICLNKIALQETALVRGCEHAYCATCILRWASYTQKPTCPQ 120

Query: 121 CKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYKPLIFEEREETYDEPEDDQYYHYE 180
           CKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYKPLIFEEREETYDEPEDDQYYHYE
Sbjct: 121 CKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYKPLIFEEREETYDEPEDDQYYHYE 180

Query: 181 DDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQEARPVLRQEFTGGPSSSRDPVTKQA 240
           DDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQEARPVLRQEFTGGPSSSRDPVTKQA
Sbjct: 181 DDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQEARPVLRQEFTGGPSSSRDPVTKQA 240

Query: 241 SKDKTGRRAKRALKREAADKAAAAKHQEHLA 272
           SKDKTGRRAKRALKREAADKAAAAKHQEHLA
Sbjct: 241 SKDKTGRRAKRALKREAADKAAAAKHQEHLA 271

[Close]

BLAST of MELO3C014562T1 vs. NCBI nr
Match: gi|449444871|ref|XP_004140197.1| (PREDICTED: uncharacterized protein LOC101206609 isoform X1 [Cucumis sativus])

HSP 1 Score: 520.4 bits (1339), Expect = 2.0e-144
Identity = 259/272 (95.22%), Postives = 263/272 (96.69%), Query Frame = 1


Query: 1   MSSSGISSQSSQLTDAVQGLVLSDQSDKDRRVMTTSSGISIQSAEISDAVQEQVTCHQLE 60
           MSSSGISSQSS+LTDAVQGLVL DQSDKDRR M TSSGISIQSAEISDAVQEQVTC QLE
Sbjct: 1   MSSSGISSQSSELTDAVQGLVLCDQSDKDRRAMATSSGISIQSAEISDAVQEQVTCDQLE 60

Query: 61  MGKKVEIQGTGHGSHDGACAICLNKIALQETALVRGCEHAYCATCILRWASYTQKPTCPQ 120
           MGKKVEIQGTGHGSHDGACAICLNKIALQETALVRGCEHAYCATCILRWASYT+KPTCPQ
Sbjct: 61  MGKKVEIQGTGHGSHDGACAICLNKIALQETALVRGCEHAYCATCILRWASYTKKPTCPQ 120

Query: 121 CKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYKPLIFEEREETYDEPEDDQYYHYE 180
           CKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYKP I EEREETYD+PEDDQYY YE
Sbjct: 121 CKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYKPPIIEEREETYDDPEDDQYYPYE 180

Query: 181 DDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQEARPVLRQEFTGGPSSSRDPVTKQA 240
           DDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQEARPVLRQEFT GPSSSR+PVTKQA
Sbjct: 181 DDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQEARPVLRQEFT-GPSSSREPVTKQA 240

Query: 241 -SKDKTGRRAKRALKREAADKAAAAKHQEHLA 272
            SKDKTGRRAKRALKREAADKAAAAKHQEHLA
Sbjct: 241 SSKDKTGRRAKRALKREAADKAAAAKHQEHLA 271

[Close]

BLAST of MELO3C014562T1 vs. NCBI nr
Match: gi|659097507|ref|XP_008449664.1| (PREDICTED: E3 ubiquitin-protein ligase RNF13 isoform X2 [Cucumis melo])

HSP 1 Score: 497.7 bits (1280), Expect = 1.4e-137
Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 1


Query: 33  MTTSSGISIQSAEISDAVQEQVTCHQLEMGKKVEIQGTGHGSHDGACAICLNKIALQETA 92
           MTTSSGISIQSAEISDAVQEQVTCHQLEMGKKVEIQGTGHGSHDGACAICLNKIALQETA
Sbjct: 1   MTTSSGISIQSAEISDAVQEQVTCHQLEMGKKVEIQGTGHGSHDGACAICLNKIALQETA 60

Query: 93  LVRGCEHAYCATCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLR 152
           LVRGCEHAYCATCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLR
Sbjct: 61  LVRGCEHAYCATCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLR 120

Query: 153 ASWYKPLIFEEREETYDEPEDDQYYHYEDDDEELEDAYLGESPSLRIGNRRWGYNGYVRA 212
           ASWYKPLIFEEREETYDEPEDDQYYHYEDDDEELEDAYLGESPSLRIGNRRWGYNGYVRA
Sbjct: 121 ASWYKPLIFEEREETYDEPEDDQYYHYEDDDEELEDAYLGESPSLRIGNRRWGYNGYVRA 180

Query: 213 GRQEARPVLRQEFTGGPSSSRDPVTKQASKDKTGRRAKRALKREAADKAAAAKHQEHLA 272
           GRQEARPVLRQEFTGGPSSSRDPVTKQASKDKTGRRAKRALKREAADKAAAAKHQEHLA
Sbjct: 181 GRQEARPVLRQEFTGGPSSSRDPVTKQASKDKTGRRAKRALKREAADKAAAAKHQEHLA 239

[Close]

BLAST of MELO3C014562T1 vs. NCBI nr
Match: gi|659097507|ref|XP_008449664.1| (PREDICTED: E3 ubiquitin-protein ligase RNF13 isoform X2 [Cucumis melo])

HSP 1 Score: 374.8 bits (961), Expect = 1.3e-100
Identity = 190/270 (70.37%), Postives = 208/270 (77.04%), Query Frame = 1


Query: 2   SSSGISSQSSQLTDAVQGLVLSDQSDKDRRVMTTSSGISIQSAEISDAVQEQVTCHQLEM 61
           +SSGIS QS++++DAVQ  V   Q +  ++V    +G        +      +  +++ +
Sbjct: 3   TSSGISIQSAEISDAVQEQVTCHQLEMGKKVEIQGTGHGSHDGACA------ICLNKIAL 62

Query: 62  GKKVEIQGTGHGSHDGACAICLNKIALQETALVRGCEHAYCATCILRWASYTQKPTCPQC 121
            +   ++G                            EHAYCATCILRWASYTQKPTCPQC
Sbjct: 63  QETALVRGC---------------------------EHAYCATCILRWASYTQKPTCPQC 122

Query: 122 KHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYKPLIFEEREETYDEPEDDQYYHYED 181
           KHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYKPLIFEEREETYDEPEDDQYYHYED
Sbjct: 123 KHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYKPLIFEEREETYDEPEDDQYYHYED 182

Query: 182 DDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQEARPVLRQEFTGGPSSSRDPVTKQAS 241
           DDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQEARPVLRQEFTGGPSSSRDPVTKQAS
Sbjct: 183 DDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQEARPVLRQEFTGGPSSSRDPVTKQAS 239

Query: 242 KDKTGRRAKRALKREAADKAAAAKHQEHLA 272
           KDKTGRRAKRALKREAADKAAAAKHQEHLA
Sbjct: 243 KDKTGRRAKRALKREAADKAAAAKHQEHLA 239

HSP 2 Score: 467.6 bits (1202), Expect = 1.5e-128
Identity = 230/240 (95.83%), Postives = 233/240 (97.08%), Query Frame = 1


Query: 33  MTTSSGISIQSAEISDAVQEQVTCHQLEMGKKVEIQGTGHGSHDGACAICLNKIALQETA 92
           M TSSGISIQSAEISDAVQEQVTC QLEMGKKVEIQGTGHGSHDGACAICLNKIALQETA
Sbjct: 1   MATSSGISIQSAEISDAVQEQVTCDQLEMGKKVEIQGTGHGSHDGACAICLNKIALQETA 60

Query: 93  LVRGCEHAYCATCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLR 152
           LVRGCEHAYCATCILRWASYT+KPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLR
Sbjct: 61  LVRGCEHAYCATCILRWASYTKKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLR 120

Query: 153 ASWYKPLIFEEREETYDEPEDDQYYHYEDDDEELEDAYLGESPSLRIGNRRWGYNGYVRA 212
           ASWYKP I EEREETYD+PEDDQYY YEDDDEELEDAYLGESPSLRIGNRRWGYNGYVRA
Sbjct: 121 ASWYKPPIIEEREETYDDPEDDQYYPYEDDDEELEDAYLGESPSLRIGNRRWGYNGYVRA 180

Query: 213 GRQEARPVLRQEFTGGPSSSRDPVTKQA-SKDKTGRRAKRALKREAADKAAAAKHQEHLA 272
           GRQEARPVLRQEFT GPSSSR+PVTKQA SKDKTGRRAKRALKREAADKAAAAKHQEHLA
Sbjct: 181 GRQEARPVLRQEFT-GPSSSREPVTKQASSKDKTGRRAKRALKREAADKAAAAKHQEHLA 239

[Close]

BLAST of MELO3C014562T1 vs. NCBI nr
Match: gi|778716917|ref|XP_011657615.1| (PREDICTED: E3 ubiquitin-protein ligase RNF13 isoform X2 [Cucumis sativus])

HSP 1 Score: 352.8 bits (904), Expect = 5.4e-94
Identity = 184/271 (67.90%), Postives = 205/271 (75.65%), Query Frame = 1


Query: 2   SSSGISSQSSQLTDAVQGLVLSDQSDKDRRVMTTSSGISIQSAEISDAVQEQVTCHQLEM 61
           +SSGIS QS++++DAVQ  V  DQ +  ++V    +G        +      +  +++ +
Sbjct: 3   TSSGISIQSAEISDAVQEQVTCDQLEMGKKVEIQGTGHGSHDGACA------ICLNKIAL 62

Query: 62  GKKVEIQGTGHGSHDGACAICLNKIALQETALVRGCEHAYCATCILRWASYTQKPTCPQC 121
            +   ++G                            EHAYCATCILRWASYT+KPTCPQC
Sbjct: 63  QETALVRGC---------------------------EHAYCATCILRWASYTKKPTCPQC 122

Query: 122 KHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYKPLIFEEREETYDEPEDDQYYHYED 181
           KHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYKP I EEREETYD+PEDDQYY YED
Sbjct: 123 KHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYKPPIIEEREETYDDPEDDQYYPYED 182

Query: 182 DDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQEARPVLRQEFTGGPSSSRDPVTKQA- 241
           DDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQEARPVLRQEFT GPSSSR+PVTKQA 
Sbjct: 183 DDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQEARPVLRQEFT-GPSSSREPVTKQAS 239

Query: 242 SKDKTGRRAKRALKREAADKAAAAKHQEHLA 272
           SKDKTGRRAKRALKREAADKAAAAKHQEHLA
Sbjct: 243 SKDKTGRRAKRALKREAADKAAAAKHQEHLA 239

HSP 2 Score: 325.9 bits (834), Expect = 7.1e-86
Identity = 161/241 (66.80%), Postives = 186/241 (77.18%), Query Frame = 1


Query: 33  MTTSSGISIQSAEISDAVQEQVTCHQLEMGKKVEIQGTGHGSHDGACAICLNKIALQETA 92
           MT+   +  Q   +SD +      HQ EM    +      G+H G CAICL++I LQETA
Sbjct: 1   MTSVINMDGQDQILSDLINSSTQQHQGEMQSNTDNVEKRCGNHGGVCAICLDEIMLQETA 60

Query: 93  LVRGCEHAYCATCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLR 152
           LV+GCEHAYCATCILRW +Y+QKPTCPQCKHPFEFL VHRSLDGSIHDYMFEESVCLLLR
Sbjct: 61  LVKGCEHAYCATCILRWVTYSQKPTCPQCKHPFEFLNVHRSLDGSIHDYMFEESVCLLLR 120

Query: 153 ASWYKPLIFEEREETYDEPEDDQYYHYED-DDEELEDAYLGESPSLRIGNRRWGYNGYVR 212
           A W++PLI EERE+ YD+P DD YY YED +D++L++AY   S S+RIGNRRWG NGYVR
Sbjct: 121 AKWFEPLIVEEREDVYDDP-DDYYYPYEDEEDDDLDEAYFSSSSSIRIGNRRWGDNGYVR 180

Query: 213 AGRQEARPVLRQEF-TGGPSSSRDPVTKQASKDKTGRRAKRALKREAADKAAAAKHQEHL 272
            GRQEARPV R      G SSSR+P  K+A+ DKTGRRAKRALKREAADKAAAAKHQ+HL
Sbjct: 181 GGRQEARPVNRSNIEDSGASSSREPRKKEAAMDKTGRRAKRALKREAADKAAAAKHQQHL 240

The following BLAST results are available for this feature:

BLAST of MELO3C014562T1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KK15_CUCSA	1.4e-144	95.22	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G431760 PE=4 SV=1	[more]
M5X7I0_PRUPE	5.0e-86	66.80	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010547mg PE=4 SV=1	[more]
A0A061GU17_THECC	2.8e-81	65.68	RING/U-box superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_040934 PE=4 S...	[more]
V4UB94_9ROSI	1.4e-80	65.13	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016417mg PE=4 SV=1	[more]
A0A061GZE8_THECC	1.8e-80	65.25	RING/U-box superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_040934 PE=4 S...	[more]

BLAST of MELO3C014562T1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G19430.1	8.4e-69	55.14	RING/U-box superfamily protein	[more]
AT5G12310.1	2.8e-64	58.29	RING/U-box superfamily protein	[more]

BLAST of MELO3C014562T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659097505\|ref\|XP_008449663.1\|	7.2e-155	100.00	PREDICTED: uncharacterized protein LOC103491476 isoform X1 [Cucumis melo]	[more]
gi\|449444871\|ref\|XP_004140197.1\|	2.0e-144	95.22	PREDICTED: uncharacterized protein LOC101206609 isoform X1 [Cucumis sativus]	[more]
gi\|659097507\|ref\|XP_008449664.1\|	1.4e-137	100.00	PREDICTED: E3 ubiquitin-protein ligase RNF13 isoform X2 [Cucumis melo]	[more]
gi\|659097507\|ref\|XP_008449664.1\|	1.3e-100	70.37	PREDICTED: E3 ubiquitin-protein ligase RNF13 isoform X2 [Cucumis melo]	[more]
gi\|778716917\|ref\|XP_011657615.1\|	5.4e-94	67.90	PREDICTED: E3 ubiquitin-protein ligase RNF13 isoform X2 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD
IPR017907	Znf_RING_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C014562	MELO3C014562	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C014562T1	MELO3C014562T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C014562T1.cds1	MELO3C014562T1.cds1	CDS
MELO3C014562T1.cds2	MELO3C014562T1.cds2	CDS
MELO3C014562T1.cds3	MELO3C014562T1.cds3	CDS
MELO3C014562T1.cds4	MELO3C014562T1.cds4	CDS
MELO3C014562T1.cds5	MELO3C014562T1.cds5	CDS
MELO3C014562T1.cds6	MELO3C014562T1.cds6	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 78..122 score: 1.
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 79..121 score: 9.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 79..122 score: 1
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 77..148 score: 1.1
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 97..106 scor
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 72..129 score: 4.65