MELO3C013610T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C013610T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	DTW domain-containing family protein
Location	chr11 : 18140805 .. 18141350 (-)
Sequence length	546

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTCTGAATGTTAAGGCCTCAACCATCATGGGACCGTACCTGCACTGCTGCAGCGGCAGCTAGCCTACTCTCTGAGCTTCAACTCGTTCCAAAGTTCAGCTCTGTTGAATTCGGAAAACAGGGTGAAGCATTGGAAGATGCTCCGGAAGTATTGTTAGAAGCTCTCACTGCTCGACGTATTCGGATGGGGTGGTCCATCACCCGTAAAGTAAGACATGCAAGCAGTTTTTGCTAATAAAAAACGATGTTACTTGAAACACCTGAGGTGCATGAAATTTTTTCATACTTTTATTGGTAGATCTACGCTAACATGATGACTTCAGAAGCGGCTTGATTTAAATCTTTTCATTACACTTTTAGGATATCAAAATATTAACCTTGTAATTTATCATTTGATCATACATTAATTTACATTTGAAGAGAGTTGTCTAACTCTTGTTTTATTAGATTAACCAAACCAACTTAAACAATACAAGCCTTCCTAAACCTCATGGGTCGGCCTGTTCTGTCAAATCTACCCAAATTTATTTTCTCGTAGATATAATA

mRNA sequence

CGTCTGAATGTTAAGGCCTCAACCATCATGGGACCGTACCTGCACTGCTGCAGCGGCAGCTAGCCTACTCTCTGAGCTTCAACTCGTTCCAAAGTTCAGCTCTGTTGAATTCGGAAAACAGGGTGAAGCATTGGAAGATGCTCCGGAAGTATTGTTAGAAGCTCTCACTGCTCGACGTATTCGGATGGGGTGGTCCATCACCCGTAAAGTAAGACATGCAAGCAGTTTTTGCTAATAAAAAACGATGTTACTTGAAACACCTGAGGTGCATGAAATTTTTTCATACTTTTATTGGTAGATCTACGCTAACATGATGACTTCAGAAGCGGCTTGATTTAAATCTTTTCATTACACTTTTAGGATATCAAAATATTAACCTTGTAATTTATCATTTGATCATACATTAATTTACATTTGAAGAGAGTTGTCTAACTCTTGTTTTATTAGATTAACCAAACCAACTTAAACAATACAAGCCTTCCTAAACCTCATGGGTCGGCCTGTTCTGTCAAATCTACCCAAATTTATTTTCTCGTAGATATAATA

Coding sequence (CDS)

ATGTTAAGGCCTCAACCATCATGGGACCGTACCTGCACTGCTGCAGCGGCAGCTAGCCTACTCTCTGAGCTTCAACTCGTTCCAAAGTTCAGCTCTGTTGAATTCGGAAAACAGGGTGAAGCATTGGAAGATGCTCCGGAAGTATTGTTAGAAGCTCTCACTGCTCGACGTATTCGGATGGGGTGGTCCATCACCCGTAAAGTAAGACATGCAAGCAGTTTTTGCTAA

Protein sequence

MLRPQPSWDRTCTAAAAASLLSELQLVPKFSSVEFGKQGEALEDAPEVLLEALTARRIRMGWSITRKVRHASSFC*

Homology

[Close]

BLAST of MELO3C013610T1 vs. TrEMBL
Match: A0A0A0KD21_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G128540 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 4.4e-29
Identity = 70/74 (94.59%), Postives = 70/74 (94.59%), Query Frame = 1


Query: 2   LRPQPSWDRTCTAAAAASLLSELQLVPKFSSVEFGKQGEALEDAPEVLLEALTARRIRMG 61
           LRPQPSWDRTCTAAAAASLL ELQLVPKFSSVEF KQGEALEDA EVLLEALTARRIRMG
Sbjct: 307 LRPQPSWDRTCTAAAAASLLFELQLVPKFSSVEFEKQGEALEDALEVLLEALTARRIRMG 366

Query: 62  WSITRKVRHASSFC 76
            SITRKVRHASSFC
Sbjct: 367 RSITRKVRHASSFC 380

[Close]

BLAST of MELO3C013610T1 vs. TrEMBL
Match: A0A059DFK5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01814 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 4.0e-22
Identity = 56/74 (75.68%), Postives = 61/74 (82.43%), Query Frame = 1


Query: 2   LRPQPSWDRTCTAAAAASLLSELQLVPKFSSVEFGKQGEALEDAPEVLLEALTARRIRMG 61
           LRPQPSWDRTCTAAAA +L+SELQ VP FSS    KQ EA+EDA +VLLEALTARR+RMG
Sbjct: 331 LRPQPSWDRTCTAAAAIALMSELQAVPDFSSYGLDKQAEAVEDALQVLLEALTARRLRMG 390

Query: 62  WSITRKVRHASSFC 76
            SITRKVRH S  C
Sbjct: 391 RSITRKVRHTSDIC 404

[Close]

BLAST of MELO3C013610T1 vs. TrEMBL
Match: A0A059DGE9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01814 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 4.0e-22
Identity = 56/74 (75.68%), Postives = 61/74 (82.43%), Query Frame = 1


Query: 2   LRPQPSWDRTCTAAAAASLLSELQLVPKFSSVEFGKQGEALEDAPEVLLEALTARRIRMG 61
           LRPQPSWDRTCTAAAA +L+SELQ VP FSS    KQ EA+EDA +VLLEALTARR+RMG
Sbjct: 324 LRPQPSWDRTCTAAAAIALMSELQAVPDFSSYGLDKQAEAVEDALQVLLEALTARRLRMG 383

Query: 62  WSITRKVRHASSFC 76
            SITRKVRH S  C
Sbjct: 384 RSITRKVRHTSDIC 397

[Close]

BLAST of MELO3C013610T1 vs. TrEMBL
Match: M5VH22_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007536mg PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 8.8e-22
Identity = 55/74 (74.32%), Postives = 59/74 (79.73%), Query Frame = 1


Query: 2   LRPQPSWDRTCTAAAAASLLSELQLVPKFSSVEFGKQGEALEDAPEVLLEALTARRIRMG 61
           LRPQPSWDRTCTA AA  LLSELQL+P+FSS  F KQ EALED   +LLEALT RR+RMG
Sbjct: 291 LRPQPSWDRTCTAGAAIGLLSELQLLPEFSSFGFDKQAEALEDTLVILLEALTTRRVRMG 350

Query: 62  WSITRKVRHASSFC 76
            SITRKVRH S  C
Sbjct: 351 RSITRKVRHMSGIC 364

[Close]

BLAST of MELO3C013610T1 vs. TrEMBL
Match: U5FYC3_POPTR (DTW domain-containing family protein OS=Populus trichocarpa GN=POPTR_0013s13560g PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 8.8e-22
Identity = 54/74 (72.97%), Postives = 64/74 (86.49%), Query Frame = 1


Query: 2   LRPQPSWDRTCTAAAAASLLSELQLVPKFSSVEFGKQGEALEDAPEVLLEALTARRIRMG 61
           LRPQPSWDRTCTAAAA  LLSELQ++P+FSS    KQ EALE+A +VLLEALTARR+RMG
Sbjct: 315 LRPQPSWDRTCTAAAAIGLLSELQVLPQFSSYGLDKQNEALENAVDVLLEALTARRLRMG 374

Query: 62  WSITRKVRHASSFC 76
            SITR++RH+S+ C
Sbjct: 375 RSITRRLRHSSNIC 388

[Close]

BLAST of MELO3C013610T1 vs. TAIR10
Match: AT1G03687.1 (AT1G03687.1 DTW domain-containing protein)

HSP 1 Score: 97.4 bits (241), Expect = 3.9e-21
Identity = 48/74 (64.86%), Postives = 56/74 (75.68%), Query Frame = 1


Query: 2   LRPQPSWDRTCTAAAAASLLSELQLVPKFSSVEFGKQGEALEDAPEVLLEALTARRIRMG 61
           LRPQPSWDRTCTAAAA  LLSEL L+P+ SS E  KQ +A+E+A  +LL++LT RR+RMG
Sbjct: 308 LRPQPSWDRTCTAAAAIGLLSELSLLPQLSSYELDKQADAVEEALVILLDSLTGRRLRMG 367

Query: 62  WSITRKVRHASSFC 76
            SITRK R+  S C
Sbjct: 368 RSITRKGRNTISMC 381

[Close]

BLAST of MELO3C013610T1 vs. NCBI nr
Match: gi|659095135|ref|XP_008448417.1| (PREDICTED: uncharacterized protein LOC103490622 [Cucumis melo])

HSP 1 Score: 138.3 bits (347), Expect = 5.7e-30
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 1


Query: 2   LRPQPSWDRTCTAAAAASLLSELQLVPKFSSVEFGKQGEALEDAPEVLLEALTARRIRMG 61
           LRPQPSWDRTCTAAAAASLLSELQ+VPKFSSV+FGKQGEALEDA EVLLEALTARRIRMG
Sbjct: 195 LRPQPSWDRTCTAAAAASLLSELQIVPKFSSVDFGKQGEALEDALEVLLEALTARRIRMG 254

Query: 62  WSITRKVRHASSFC 76
            SITRKVRHASSFC
Sbjct: 255 RSITRKVRHASSFC 268

[Close]

BLAST of MELO3C013610T1 vs. NCBI nr
Match: gi|449444356|ref|XP_004139941.1| (PREDICTED: uncharacterized protein LOC101203963 [Cucumis sativus])

HSP 1 Score: 134.8 bits (338), Expect = 6.3e-29
Identity = 70/74 (94.59%), Postives = 70/74 (94.59%), Query Frame = 1


Query: 2   LRPQPSWDRTCTAAAAASLLSELQLVPKFSSVEFGKQGEALEDAPEVLLEALTARRIRMG 61
           LRPQPSWDRTCTAAAAASLL ELQLVPKFSSVEF KQGEALEDA EVLLEALTARRIRMG
Sbjct: 307 LRPQPSWDRTCTAAAAASLLFELQLVPKFSSVEFEKQGEALEDALEVLLEALTARRIRMG 366

Query: 62  WSITRKVRHASSFC 76
            SITRKVRHASSFC
Sbjct: 367 RSITRKVRHASSFC 380

[Close]

BLAST of MELO3C013610T1 vs. NCBI nr
Match: gi|629125103|gb|KCW89528.1| (hypothetical protein EUGRSUZ_A01814 [Eucalyptus grandis])

HSP 1 Score: 111.7 bits (278), Expect = 5.7e-22
Identity = 56/74 (75.68%), Postives = 61/74 (82.43%), Query Frame = 1


Query: 2   LRPQPSWDRTCTAAAAASLLSELQLVPKFSSVEFGKQGEALEDAPEVLLEALTARRIRMG 61
           LRPQPSWDRTCTAAAA +L+SELQ VP FSS    KQ EA+EDA +VLLEALTARR+RMG
Sbjct: 331 LRPQPSWDRTCTAAAAIALMSELQAVPDFSSYGLDKQAEAVEDALQVLLEALTARRLRMG 390

Query: 62  WSITRKVRHASSFC 76
            SITRKVRH S  C
Sbjct: 391 RSITRKVRHTSDIC 404

[Close]

BLAST of MELO3C013610T1 vs. NCBI nr
Match: gi|702244827|ref|XP_010051902.1| (PREDICTED: uncharacterized protein LOC104440669 [Eucalyptus grandis])

HSP 1 Score: 111.7 bits (278), Expect = 5.7e-22
Identity = 56/74 (75.68%), Postives = 61/74 (82.43%), Query Frame = 1


Query: 2   LRPQPSWDRTCTAAAAASLLSELQLVPKFSSVEFGKQGEALEDAPEVLLEALTARRIRMG 61
           LRPQPSWDRTCTAAAA +L+SELQ VP FSS    KQ EA+EDA +VLLEALTARR+RMG
Sbjct: 349 LRPQPSWDRTCTAAAAIALMSELQAVPDFSSYGLDKQAEAVEDALQVLLEALTARRLRMG 408

Query: 62  WSITRKVRHASSFC 76
            SITRKVRH S  C
Sbjct: 409 RSITRKVRHTSDIC 422

[Close]

BLAST of MELO3C013610T1 vs. NCBI nr
Match: gi|629125104|gb|KCW89529.1| (hypothetical protein EUGRSUZ_A01814 [Eucalyptus grandis])

HSP 1 Score: 111.7 bits (278), Expect = 5.7e-22
Identity = 56/74 (75.68%), Postives = 61/74 (82.43%), Query Frame = 1


Query: 2   LRPQPSWDRTCTAAAAASLLSELQLVPKFSSVEFGKQGEALEDAPEVLLEALTARRIRMG 61
           LRPQPSWDRTCTAAAA +L+SELQ VP FSS    KQ EA+EDA +VLLEALTARR+RMG
Sbjct: 324 LRPQPSWDRTCTAAAAIALMSELQAVPDFSSYGLDKQAEAVEDALQVLLEALTARRLRMG 383

Query: 62  WSITRKVRHASSFC 76
            SITRKVRH S  C
Sbjct: 384 RSITRKVRHTSDIC 397

The following BLAST results are available for this feature:

BLAST of MELO3C013610T1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KD21_CUCSA	4.4e-29	94.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G128540 PE=4 SV=1	[more]
A0A059DFK5_EUCGR	4.0e-22	75.68	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01814 PE=4 SV=1	[more]
A0A059DGE9_EUCGR	4.0e-22	75.68	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01814 PE=4 SV=1	[more]
M5VH22_PRUPE	8.8e-22	74.32	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007536mg PE=4 SV=1	[more]
U5FYC3_POPTR	8.8e-22	72.97	DTW domain-containing family protein OS=Populus trichocarpa GN=POPTR_0013s13560g...	[more]

BLAST of MELO3C013610T1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G03687.1	3.9e-21	64.86	DTW domain-containing protein	[more]

BLAST of MELO3C013610T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659095135\|ref\|XP_008448417.1\|	5.7e-30	94.59	PREDICTED: uncharacterized protein LOC103490622 [Cucumis melo]	[more]
gi\|449444356\|ref\|XP_004139941.1\|	6.3e-29	94.59	PREDICTED: uncharacterized protein LOC101203963 [Cucumis sativus]	[more]
gi\|629125103\|gb\|KCW89528.1\|	5.7e-22	75.68	hypothetical protein EUGRSUZ_A01814 [Eucalyptus grandis]	[more]
gi\|702244827\|ref\|XP_010051902.1\|	5.7e-22	75.68	PREDICTED: uncharacterized protein LOC104440669 [Eucalyptus grandis]	[more]
gi\|629125104\|gb\|KCW89529.1\|	5.7e-22	75.68	hypothetical protein EUGRSUZ_A01814 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C013610	MELO3C013610	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C013610T1	MELO3C013610T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C013610T1.cds1	MELO3C013610T1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR21392	UNCHARACTERIZED	coord: 2..70 score: 9.6
None	No IPR available	PANTHER	PTHR21392:SF4	DTW DOMAIN-CONTAINING PROTEIN	coord: 2..70 score: 9.6