MELO3C013610 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C013610
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	DTW domain-containing family protein
Location	chr11 : 18140805 .. 18141350 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTCTGAATGTTAAGGCCTCAACCATCATGGGACCGTACCTGCACTGCTGCAGCGGCAGCTAGCCTACTCTCTGAGCTTCAACTCGTTCCAAAGTTCAGCTCTGTTGAATTCGGAAAACAGGGTGAAGCATTGGAAGATGCTCCGGAAGTATTGTTAGAAGCTCTCACTGCTCGACGTATTCGGATGGGGTGGTCCATCACCCGTAAAGTAAGACATGCAAGCAGTTTTTGCTAATAAAAAACGATGTTACTTGAAACACCTGAGGTGCATGAAATTTTTTCATACTTTTATTGGTAGATCTACGCTAACATGATGACTTCAGAAGCGGCTTGATTTAAATCTTTTCATTACACTTTTAGGATATCAAAATATTAACCTTGTAATTTATCATTTGATCATACATTAATTTACATTTGAAGAGAGTTGTCTAACTCTTGTTTTATTAGATTAACCAAACCAACTTAAACAATACAAGCCTTCCTAAACCTCATGGGTCGGCCTGTTCTGTCAAATCTACCCAAATTTATTTTCTCGTAGATATAATA

mRNA sequence

CGTCTGAATGTTAAGGCCTCAACCATCATGGGACCGTACCTGCACTGCTGCAGCGGCAGCTAGCCTACTCTCTGAGCTTCAACTCGTTCCAAAGTTCAGCTCTGTTGAATTCGGAAAACAGGGTGAAGCATTGGAAGATGCTCCGGAAGTATTGTTAGAAGCTCTCACTGCTCGACGTATTCGGATGGGGTGGTCCATCACCCGTAAAGTAAGACATGCAAGCAGTTTTTGCTAATAAAAAACGATGTTACTTGAAACACCTGAGGTGCATGAAATTTTTTCATACTTTTATTGGTAGATCTACGCTAACATGATGACTTCAGAAGCGGCTTGATTTAAATCTTTTCATTACACTTTTAGGATATCAAAATATTAACCTTGTAATTTATCATTTGATCATACATTAATTTACATTTGAAGAGAGTTGTCTAACTCTTGTTTTATTAGATTAACCAAACCAACTTAAACAATACAAGCCTTCCTAAACCTCATGGGTCGGCCTGTTCTGTCAAATCTACCCAAATTTATTTTCTCGTAGATATAATA

Coding sequence (CDS)

ATGTTAAGGCCTCAACCATCATGGGACCGTACCTGCACTGCTGCAGCGGCAGCTAGCCTACTCTCTGAGCTTCAACTCGTTCCAAAGTTCAGCTCTGTTGAATTCGGAAAACAGGGTGAAGCATTGGAAGATGCTCCGGAAGTATTGTTAGAAGCTCTCACTGCTCGACGTATTCGGATGGGGTGGTCCATCACCCGTAAAGTAAGACATGCAAGCAGTTTTTGCTAA

Protein sequence

MLRPQPSWDRTCTAAAAASLLSELQLVPKFSSVEFGKQGEALEDAPEVLLEALTARRIRMGWSITRKVRHASSFC*

Homology

[Close]

BLAST of MELO3C013610 vs. TrEMBL
Match: A0A0A0KD21_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G128540 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 4.4e-29
Identity = 70/74 (94.59%), Postives = 70/74 (94.59%), Query Frame = 1


Query: 2   LRPQPSWDRTCTAAAAASLLSELQLVPKFSSVEFGKQGEALEDAPEVLLEALTARRIRMG 61
           LRPQPSWDRTCTAAAAASLL ELQLVPKFSSVEF KQGEALEDA EVLLEALTARRIRMG
Sbjct: 307 LRPQPSWDRTCTAAAAASLLFELQLVPKFSSVEFEKQGEALEDALEVLLEALTARRIRMG 366

Query: 62  WSITRKVRHASSFC 76
            SITRKVRHASSFC
Sbjct: 367 RSITRKVRHASSFC 380

[Close]

BLAST of MELO3C013610 vs. TrEMBL
Match: A0A059DFK5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01814 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 4.0e-22
Identity = 56/74 (75.68%), Postives = 61/74 (82.43%), Query Frame = 1


Query: 2   LRPQPSWDRTCTAAAAASLLSELQLVPKFSSVEFGKQGEALEDAPEVLLEALTARRIRMG 61
           LRPQPSWDRTCTAAAA +L+SELQ VP FSS    KQ EA+EDA +VLLEALTARR+RMG
Sbjct: 331 LRPQPSWDRTCTAAAAIALMSELQAVPDFSSYGLDKQAEAVEDALQVLLEALTARRLRMG 390

Query: 62  WSITRKVRHASSFC 76
            SITRKVRH S  C
Sbjct: 391 RSITRKVRHTSDIC 404

[Close]

BLAST of MELO3C013610 vs. TrEMBL
Match: A0A059DGE9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01814 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 4.0e-22
Identity = 56/74 (75.68%), Postives = 61/74 (82.43%), Query Frame = 1


Query: 2   LRPQPSWDRTCTAAAAASLLSELQLVPKFSSVEFGKQGEALEDAPEVLLEALTARRIRMG 61
           LRPQPSWDRTCTAAAA +L+SELQ VP FSS    KQ EA+EDA +VLLEALTARR+RMG
Sbjct: 324 LRPQPSWDRTCTAAAAIALMSELQAVPDFSSYGLDKQAEAVEDALQVLLEALTARRLRMG 383

Query: 62  WSITRKVRHASSFC 76
            SITRKVRH S  C
Sbjct: 384 RSITRKVRHTSDIC 397

[Close]

BLAST of MELO3C013610 vs. TrEMBL
Match: M5VH22_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007536mg PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 8.8e-22
Identity = 55/74 (74.32%), Postives = 59/74 (79.73%), Query Frame = 1


Query: 2   LRPQPSWDRTCTAAAAASLLSELQLVPKFSSVEFGKQGEALEDAPEVLLEALTARRIRMG 61
           LRPQPSWDRTCTA AA  LLSELQL+P+FSS  F KQ EALED   +LLEALT RR+RMG
Sbjct: 291 LRPQPSWDRTCTAGAAIGLLSELQLLPEFSSFGFDKQAEALEDTLVILLEALTTRRVRMG 350

Query: 62  WSITRKVRHASSFC 76
            SITRKVRH S  C
Sbjct: 351 RSITRKVRHMSGIC 364

[Close]

BLAST of MELO3C013610 vs. TrEMBL
Match: U5FYC3_POPTR (DTW domain-containing family protein OS=Populus trichocarpa GN=POPTR_0013s13560g PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 8.8e-22
Identity = 54/74 (72.97%), Postives = 64/74 (86.49%), Query Frame = 1


Query: 2   LRPQPSWDRTCTAAAAASLLSELQLVPKFSSVEFGKQGEALEDAPEVLLEALTARRIRMG 61
           LRPQPSWDRTCTAAAA  LLSELQ++P+FSS    KQ EALE+A +VLLEALTARR+RMG
Sbjct: 315 LRPQPSWDRTCTAAAAIGLLSELQVLPQFSSYGLDKQNEALENAVDVLLEALTARRLRMG 374

Query: 62  WSITRKVRHASSFC 76
            SITR++RH+S+ C
Sbjct: 375 RSITRRLRHSSNIC 388

[Close]

BLAST of MELO3C013610 vs. TAIR10
Match: AT1G03687.1 (AT1G03687.1 DTW domain-containing protein)

HSP 1 Score: 97.4 bits (241), Expect = 3.9e-21
Identity = 48/74 (64.86%), Postives = 56/74 (75.68%), Query Frame = 1


Query: 2   LRPQPSWDRTCTAAAAASLLSELQLVPKFSSVEFGKQGEALEDAPEVLLEALTARRIRMG 61
           LRPQPSWDRTCTAAAA  LLSEL L+P+ SS E  KQ +A+E+A  +LL++LT RR+RMG
Sbjct: 308 LRPQPSWDRTCTAAAAIGLLSELSLLPQLSSYELDKQADAVEEALVILLDSLTGRRLRMG 367

Query: 62  WSITRKVRHASSFC 76
            SITRK R+  S C
Sbjct: 368 RSITRKGRNTISMC 381

[Close]

BLAST of MELO3C013610 vs. NCBI nr
Match: gi|659095135|ref|XP_008448417.1| (PREDICTED: uncharacterized protein LOC103490622 [Cucumis melo])

HSP 1 Score: 138.3 bits (347), Expect = 5.7e-30
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 1


Query: 2   LRPQPSWDRTCTAAAAASLLSELQLVPKFSSVEFGKQGEALEDAPEVLLEALTARRIRMG 61
           LRPQPSWDRTCTAAAAASLLSELQ+VPKFSSV+FGKQGEALEDA EVLLEALTARRIRMG
Sbjct: 195 LRPQPSWDRTCTAAAAASLLSELQIVPKFSSVDFGKQGEALEDALEVLLEALTARRIRMG 254

Query: 62  WSITRKVRHASSFC 76
            SITRKVRHASSFC
Sbjct: 255 RSITRKVRHASSFC 268

[Close]

BLAST of MELO3C013610 vs. NCBI nr
Match: gi|449444356|ref|XP_004139941.1| (PREDICTED: uncharacterized protein LOC101203963 [Cucumis sativus])

HSP 1 Score: 134.8 bits (338), Expect = 6.3e-29
Identity = 70/74 (94.59%), Postives = 70/74 (94.59%), Query Frame = 1


Query: 2   LRPQPSWDRTCTAAAAASLLSELQLVPKFSSVEFGKQGEALEDAPEVLLEALTARRIRMG 61
           LRPQPSWDRTCTAAAAASLL ELQLVPKFSSVEF KQGEALEDA EVLLEALTARRIRMG
Sbjct: 307 LRPQPSWDRTCTAAAAASLLFELQLVPKFSSVEFEKQGEALEDALEVLLEALTARRIRMG 366

Query: 62  WSITRKVRHASSFC 76
            SITRKVRHASSFC
Sbjct: 367 RSITRKVRHASSFC 380

[Close]

BLAST of MELO3C013610 vs. NCBI nr
Match: gi|629125103|gb|KCW89528.1| (hypothetical protein EUGRSUZ_A01814 [Eucalyptus grandis])

HSP 1 Score: 111.7 bits (278), Expect = 5.7e-22
Identity = 56/74 (75.68%), Postives = 61/74 (82.43%), Query Frame = 1


Query: 2   LRPQPSWDRTCTAAAAASLLSELQLVPKFSSVEFGKQGEALEDAPEVLLEALTARRIRMG 61
           LRPQPSWDRTCTAAAA +L+SELQ VP FSS    KQ EA+EDA +VLLEALTARR+RMG
Sbjct: 331 LRPQPSWDRTCTAAAAIALMSELQAVPDFSSYGLDKQAEAVEDALQVLLEALTARRLRMG 390

Query: 62  WSITRKVRHASSFC 76
            SITRKVRH S  C
Sbjct: 391 RSITRKVRHTSDIC 404

[Close]

BLAST of MELO3C013610 vs. NCBI nr
Match: gi|702244827|ref|XP_010051902.1| (PREDICTED: uncharacterized protein LOC104440669 [Eucalyptus grandis])

HSP 1 Score: 111.7 bits (278), Expect = 5.7e-22
Identity = 56/74 (75.68%), Postives = 61/74 (82.43%), Query Frame = 1


Query: 2   LRPQPSWDRTCTAAAAASLLSELQLVPKFSSVEFGKQGEALEDAPEVLLEALTARRIRMG 61
           LRPQPSWDRTCTAAAA +L+SELQ VP FSS    KQ EA+EDA +VLLEALTARR+RMG
Sbjct: 349 LRPQPSWDRTCTAAAAIALMSELQAVPDFSSYGLDKQAEAVEDALQVLLEALTARRLRMG 408

Query: 62  WSITRKVRHASSFC 76
            SITRKVRH S  C
Sbjct: 409 RSITRKVRHTSDIC 422

[Close]

BLAST of MELO3C013610 vs. NCBI nr
Match: gi|629125104|gb|KCW89529.1| (hypothetical protein EUGRSUZ_A01814 [Eucalyptus grandis])

HSP 1 Score: 111.7 bits (278), Expect = 5.7e-22
Identity = 56/74 (75.68%), Postives = 61/74 (82.43%), Query Frame = 1


Query: 2   LRPQPSWDRTCTAAAAASLLSELQLVPKFSSVEFGKQGEALEDAPEVLLEALTARRIRMG 61
           LRPQPSWDRTCTAAAA +L+SELQ VP FSS    KQ EA+EDA +VLLEALTARR+RMG
Sbjct: 324 LRPQPSWDRTCTAAAAIALMSELQAVPDFSSYGLDKQAEAVEDALQVLLEALTARRLRMG 383

Query: 62  WSITRKVRHASSFC 76
            SITRKVRH S  C
Sbjct: 384 RSITRKVRHTSDIC 397

The following BLAST results are available for this feature:

BLAST of MELO3C013610 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KD21_CUCSA	4.4e-29	94.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G128540 PE=4 SV=1	[more]
A0A059DFK5_EUCGR	4.0e-22	75.68	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01814 PE=4 SV=1	[more]
A0A059DGE9_EUCGR	4.0e-22	75.68	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01814 PE=4 SV=1	[more]
M5VH22_PRUPE	8.8e-22	74.32	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007536mg PE=4 SV=1	[more]
U5FYC3_POPTR	8.8e-22	72.97	DTW domain-containing family protein OS=Populus trichocarpa GN=POPTR_0013s13560g...	[more]

BLAST of MELO3C013610 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G03687.1	3.9e-21	64.86	DTW domain-containing protein	[more]

BLAST of MELO3C013610 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659095135\|ref\|XP_008448417.1\|	5.7e-30	94.59	PREDICTED: uncharacterized protein LOC103490622 [Cucumis melo]	[more]
gi\|449444356\|ref\|XP_004139941.1\|	6.3e-29	94.59	PREDICTED: uncharacterized protein LOC101203963 [Cucumis sativus]	[more]
gi\|629125103\|gb\|KCW89528.1\|	5.7e-22	75.68	hypothetical protein EUGRSUZ_A01814 [Eucalyptus grandis]	[more]
gi\|702244827\|ref\|XP_010051902.1\|	5.7e-22	75.68	PREDICTED: uncharacterized protein LOC104440669 [Eucalyptus grandis]	[more]
gi\|629125104\|gb\|KCW89529.1\|	5.7e-22	75.68	hypothetical protein EUGRSUZ_A01814 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C013610T1	MELO3C013610T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR21392	UNCHARACTERIZED	coord: 2..70 score: 9.6
None	No IPR available	PANTHER	PTHR21392:SF4	DTW DOMAIN-CONTAINING PROTEIN	coord: 2..70 score: 9.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C013610	Csa6G128540	Cucumber (Chinese Long) v2	cumeB446
MELO3C013610	Bhi10G000867	Wax gourd	mewgoB121
MELO3C013610	CSPI06G10510	Wild cucumber (PI 183967)	cpimeB438
MELO3C013610	Cucsa.119050	Cucumber (Gy14) v1	cgymeB177
MELO3C013610	CmaCh02G001020	Cucurbita maxima (Rimu)	cmameB555
MELO3C013610	CmoCh02G001030	Cucurbita moschata (Rifu)	cmomeB543
MELO3C013610	Cp4.1LG05g14890	Cucurbita pepo (Zucchini)	cpemeB661
MELO3C013610	CsGy6G010620	Cucumber (Gy14) v2	cgybmeB384
MELO3C013610	Carg13584	Silver-seed gourd	carmeB0027
MELO3C013610	CsaV3_6G012990	Cucumber (Chinese Long) v3	cucmeB449

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C013610	Watermelon (97103) v2	mewmbB097
MELO3C013610	Wax gourd	mewgoB110
MELO3C013610	Wax gourd	mewgoB132
MELO3C013610	Melon (DHL92) v3.5.1	memeB043
MELO3C013610	Cucumber (Gy14) v1	cgymeB247
MELO3C013610	Cucurbita maxima (Rimu)	cmameB496
MELO3C013610	Cucurbita moschata (Rifu)	cmomeB487
MELO3C013610	Wild cucumber (PI 183967)	cpimeB519
MELO3C013610	Cucumber (Chinese Long) v2	cumeB514
MELO3C013610	Watermelon (Charleston Gray)	mewcgB095
MELO3C013610	Watermelon (97103) v1	mewmB109
MELO3C013610	Cucurbita pepo (Zucchini)	cpemeB263
MELO3C013610	Bottle gourd (USVL1VR-Ls)	lsimeB048
MELO3C013610	Bottle gourd (USVL1VR-Ls)	lsimeB087
MELO3C013610	Silver-seed gourd	carmeB0417
MELO3C013610	Silver-seed gourd	carmeB0714
MELO3C013610	Cucumber (Chinese Long) v3	cucmeB531