MELO3C013561.2.1 (mRNA) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C013561.2.1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Transmembrane protein, putative
Location	chr11 : 17623956 .. 17624318 (-)
Sequence length	309

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCACAGAATCACACCTTCTCTGTTCCCTATCTTCCTTGTGATCCTCGCAATGACTGGAGAAGCAGTTGCAGCACGTGATTTTCCTGAAAGGTCGAGCAGTGATGATGATAAGAAACAGCCTTAATGGCTGATTGGATATGATAGGGTCAGTGTGCTAATTCCTGGCATTGGACGCATCACATTGTCACCATACGACAAAGGCAGCCATGGAGGAGGGCATTCGAGTTCATATGGCAGTAACCCAGCTCCAAAACGTCAATATATTCCAGGTGGGGATGATAATTTCATTCCAAATCCTGGATATGAGGTGCCAATCCCTGCCAATATTGGTGGTGTTAAAGAAACATCCTATCCTTGA

mRNA sequence

ATGGCTCACAGAATCACACCTTCTCTGTTCCCTATCTTCCTTGTGATCCTCGCAATGACTGGAGAAGCAGTTGCAGCACGTGATTTTCCTGAAAGGGTCAGTGTGCTAATTCCTGGCATTGGACGCATCACATTGTCACCATACGACAAAGGCAGCCATGGAGGAGGGCATTCGAGTTCATATGGCAGTAACCCAGCTCCAAAACGTCAATATATTCCAGGTGGGGATGATAATTTCATTCCAAATCCTGGATATGAGGTGCCAATCCCTGCCAATATTGGTGGTGTTAAAGAAACATCCTATCCTTGA

Coding sequence (CDS)

ATGGCTCACAGAATCACACCTTCTCTGTTCCCTATCTTCCTTGTGATCCTCGCAATGACTGGAGAAGCAGTTGCAGCACGTGATTTTCCTGAAAGGGTCAGTGTGCTAATTCCTGGCATTGGACGCATCACATTGTCACCATACGACAAAGGCAGCCATGGAGGAGGGCATTCGAGTTCATATGGCAGTAACCCAGCTCCAAAACGTCAATATATTCCAGGTGGGGATGATAATTTCATTCCAAATCCTGGATATGAGGTGCCAATCCCTGCCAATATTGGTGGTGTTAAAGAAACATCCTATCCTTGA

Protein sequence

MAHRITPSLFPIFLVILAMTGEAVAARDFPERVSVLIPGIGRITLSPYDKGSHGGGHSSSYGSNPAPKRQYIPGGDDNFIPNPGYEVPIPANIGGVKETSYP

Homology

[Close]

BLAST of MELO3C013561.2.1 vs. NCBI nr
Match: XP_022970746.1 (putative cell wall protein [Cucurbita maxima])

HSP 1 Score: 145.6 bits (366), Expect = 9.3e-32
Identity = 77/119 (64.71%), Postives = 85/119 (71.43%), Query Frame = 0


Query: 1   MAHRITPSLFPIFLVILAMTGEAVAARDFPER-----------------VSVLIPGIGRI 60
           MA+R   SL   F+VILA+ GEAVAAR+  ER                 VSVLIPGIGR 
Sbjct: 1   MANRTIASLLATFIVILAIAGEAVAARNVHERSSIDDKKQPEWVAGHDGVSVLIPGIGRF 60

Query: 61  TLSPYDKGSHGGGHSSSYGSNPAPKRQYIPGGDDNFIPNPGYEVPIPANIGGVKETSYP 103
           TLSP+DKGS G G + SYGSNPAP+RQYIPGGDDNFIPNPG+EVPIPA I GVKET YP
Sbjct: 61  TLSPHDKGSSGEGQAGSYGSNPAPRRQYIPGGDDNFIPNPGFEVPIPAKISGVKETPYP 119

[Close]

BLAST of MELO3C013561.2.1 vs. NCBI nr
Match: KGN46699.1 (hypothetical protein Csa_6G124140 [Cucumis sativus])

HSP 1 Score: 144.1 bits (362), Expect = 2.7e-31
Identity = 78/102 (76.47%), Postives = 82/102 (80.39%), Query Frame = 0


Query: 1   MAHRITPSLFPIFLVILAMTGEAVAARDFPERVSVLIPGIGRITLSPYDKGSHGGGHSSS 60
           MAHRI PS+ PIFLVILAMTGEAVA       VSVLIPGIGR+TLS        GGHSSS
Sbjct: 1   MAHRIIPSMLPIFLVILAMTGEAVA---LCSTVSVLIPGIGRLTLS-------RGGHSSS 60

Query: 61  YGSNPAPKRQYIPGGDDNFIPNPGYEVPIPANIGGVKETSYP 103
           YGSNPAP+RQYIPGGD NFIPNPGYEV I A+IGGVKETSYP
Sbjct: 61  YGSNPAPRRQYIPGGDGNFIPNPGYEVRITADIGGVKETSYP 92

[Close]

BLAST of MELO3C013561.2.1 vs. NCBI nr
Match: XP_022140620.1 (putative cell wall protein [Momordica charantia])

HSP 1 Score: 110.2 bits (274), Expect = 4.3e-21
Identity = 55/70 (78.57%), Postives = 58/70 (82.86%), Query Frame = 0


Query: 33  VSVLIPGIGRITLSPYDKGSHGGGHSSSYGSNPAPKRQYIPGGDDNFIPNPGYEVPIPAN 92
           VSVLIPGIGRITL PYDKGS  G H+ SYGSNPA   QYIPGGDDNFIPNPG+EVP PAN
Sbjct: 51  VSVLIPGIGRITLPPYDKGSF-GEHAGSYGSNPASSGQYIPGGDDNFIPNPGFEVPNPAN 110

Query: 93  IGGVKETSYP 103
           IG VK T +P
Sbjct: 111 IGVVKATPHP 119

[Close]

BLAST of MELO3C013561.2.1 vs. NCBI nr
Match: XP_008230254.1 (PREDICTED: putative cell wall protein [Prunus mume])

HSP 1 Score: 77.4 bits (189), Expect = 3.1e-11
Identity = 49/125 (39.20%), Postives = 60/125 (48.00%), Query Frame = 0


Query: 1   MAHRITPSLFP---IFLVILAMTGEAVAARDFPER-------------VSVLIPGIGRIT 60
           MA +   S  P   + +V+LA+TG+AVA R  P +              S LIPGIGR+ 
Sbjct: 1   MADKTRSSFLPLISLLVVLLAITGQAVAGRSVPTKDDKKQPEWFIGHDGSHLIPGIGRVI 60

Query: 61  LSPY----------DKGSHGGGHSSSYGSNPAPKRQYIPGGDDNFIPNPGYEVPIPANIG 100
             P           D GS G    S  G  P+    Y+PGGDD F+PNPGYEVP P N  
Sbjct: 61  FPPLHNVVPQTPFPDNGSTGNTGGSGSGEAPSTGHDYVPGGDDTFVPNPGYEVPNPGNGA 120

[Close]

BLAST of MELO3C013561.2.1 vs. NCBI nr
Match: WP_088493096.1 (hypothetical protein [Porphyromonas gingivalis] >XP_007216421.1 putative cell wall protein [Prunus persica] >ONI18729.1 hypothetical protein PRUPE_3G234900 [Prunus persica] >OWR80120.1 hypothetical protein SJDPG4_10125 [Porphyromonas gingivalis SJD4])

HSP 1 Score: 76.3 bits (186), Expect = 6.9e-11
Identity = 47/121 (38.84%), Postives = 60/121 (49.59%), Query Frame = 0


Query: 1   MAHRITPSLFP---IFLVILAMTGEAVAARDFPER-------------VSVLIPGIGRIT 60
           MA +   S  P   I +V+LA+TG+AVA R  P +              S LIPG+GR+ 
Sbjct: 1   MADKTRTSFLPLISILVVLLAITGQAVAGRSVPTKDDKKQPEWFIGHDGSYLIPGLGRVL 60

Query: 61  LSPY----------DKGSHGGGHSSSYGSNPAPKRQYIPGGDDNFIPNPGYEVPIPANIG 96
           + P           + G  G    S  G  P+    Y+PGGDD F+PNPGYEVPIP N  
Sbjct: 61  IPPRHNVVPQTPFPNNGRTGSTGGSGSGQTPSTGHDYVPGGDDTFVPNPGYEVPIPGNGA 120

[Close]

BLAST of MELO3C013561.2.1 vs. TAIR10
Match: AT2G20870.1 (cell wall protein precursor, putative)

HSP 1 Score: 48.1 bits (113), Expect = 3.7e-06
Identity = 27/69 (39.13%), Postives = 33/69 (47.83%), Query Frame = 0


Query: 34  SVLIPGIGRITLSPYDKGSH------------GGGHSSSYGSNPAPKRQYIPGGDDNFIP 91
           ++LIPG+GR  L P  K               GGG  S  G   A     +PGGDD  +P
Sbjct: 54  TILIPGVGRFLLPPKCKKPFYPYNPVTGAPLTGGGIPSYNGGQGAGPHTQLPGGDDTLVP 113

[Close]

BLAST of MELO3C013561.2.1 vs. Swiss-Prot
Match: sp|P47925|CWPX_ARATH (Putative cell wall protein OS=Arabidopsis thaliana OX=3702 GN=At2g20870 PE=2 SV=2)

HSP 1 Score: 48.1 bits (113), Expect = 6.6e-05
Identity = 27/69 (39.13%), Postives = 33/69 (47.83%), Query Frame = 0


Query: 34  SVLIPGIGRITLSPYDKGSH------------GGGHSSSYGSNPAPKRQYIPGGDDNFIP 91
           ++LIPG+GR  L P  K               GGG  S  G   A     +PGGDD  +P
Sbjct: 54  TILIPGVGRFLLPPKCKKPFYPYNPVTGAPLTGGGIPSYNGGQGAGPHTQLPGGDDTLVP 113

[Close]

BLAST of MELO3C013561.2.1 vs. TrEMBL
Match: tr|A0A0A0KCX5|A0A0A0KCX5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G124140 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.8e-31
Identity = 78/102 (76.47%), Postives = 82/102 (80.39%), Query Frame = 0


Query: 1   MAHRITPSLFPIFLVILAMTGEAVAARDFPERVSVLIPGIGRITLSPYDKGSHGGGHSSS 60
           MAHRI PS+ PIFLVILAMTGEAVA       VSVLIPGIGR+TLS        GGHSSS
Sbjct: 1   MAHRIIPSMLPIFLVILAMTGEAVA---LCSTVSVLIPGIGRLTLS-------RGGHSSS 60

Query: 61  YGSNPAPKRQYIPGGDDNFIPNPGYEVPIPANIGGVKETSYP 103
           YGSNPAP+RQYIPGGD NFIPNPGYEV I A+IGGVKETSYP
Sbjct: 61  YGSNPAPRRQYIPGGDGNFIPNPGYEVRITADIGGVKETSYP 92

[Close]

BLAST of MELO3C013561.2.1 vs. TrEMBL
Match: tr|M5XEW2|M5XEW2_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G234900 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.6e-11
Identity = 47/121 (38.84%), Postives = 60/121 (49.59%), Query Frame = 0


Query: 1   MAHRITPSLFP---IFLVILAMTGEAVAARDFPER-------------VSVLIPGIGRIT 60
           MA +   S  P   I +V+LA+TG+AVA R  P +              S LIPG+GR+ 
Sbjct: 1   MADKTRTSFLPLISILVVLLAITGQAVAGRSVPTKDDKKQPEWFIGHDGSYLIPGLGRVL 60

Query: 61  LSPY----------DKGSHGGGHSSSYGSNPAPKRQYIPGGDDNFIPNPGYEVPIPANIG 96
           + P           + G  G    S  G  P+    Y+PGGDD F+PNPGYEVPIP N  
Sbjct: 61  IPPRHNVVPQTPFPNNGRTGSTGGSGSGQTPSTGHDYVPGGDDTFVPNPGYEVPIPGNGA 120

[Close]

BLAST of MELO3C013561.2.1 vs. TrEMBL
Match: tr|W9QZW5|W9QZW5_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_022158 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.6e-09
Identity = 47/124 (37.90%), Postives = 58/124 (46.77%), Query Frame = 0


Query: 15  VILAMTGEAVAARDFPER---------------VSVLIPGIGRITLSPYDKGSHG----- 74
           ++L+M  EAVA R  P+                 SVLIPG+GR+ L P   G HG     
Sbjct: 17  ILLSMANEAVAGRSVPKEGADVKQPEWLVDHHDGSVLIPGLGRVLLPPL-HGHHGLHKDH 76

Query: 75  ---------GGHSS-------SYGSNPAPKRQYIPGGDDNFIPNPGYEVPIPANIGGVKE 103
                    G +SS        +G  P+  R YIPGGDD  +PNPG+EVPIP   GG   
Sbjct: 77  DHLYYNPITGTYSSGTGRAPLGHGIIPSTPRSYIPGGDDTLVPNPGFEVPIPGRSGGPPV 136

[Close]

BLAST of MELO3C013561.2.1 vs. TrEMBL
Match: tr|F6HIG9|F6HIG9_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0059g01830 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.6e-08
Identity = 45/128 (35.16%), Postives = 63/128 (49.22%), Query Frame = 0


Query: 1   MAHRITPSLFPIFLVILAMTGEAVAARDFP---ERV-------------SVLIPGIGRIT 60
           MAH +  SL  + ++   + G+A+AAR+ P   ++V             S+LIPG+GR+ 
Sbjct: 1   MAHSLQASLIALLVIFNVLLGQAIAAREVPNDSKKVDKKQPEWFIEPDGSLLIPGLGRVM 60

Query: 61  LSPYDKGSHGGGHSSSYGSNP----------APKRQYIPGGDDNFIPNPGYEVPIPANIG 103
           +  Y      G ++   GS P               YIPGGDD F+PNPG E+P PA  G
Sbjct: 61  VPGY------GSYTPYDGSIPXXXXXXXXXXXXXXXYIPGGDDTFVPNPGVEIPNPAGGG 120

[Close]

BLAST of MELO3C013561.2.1 vs. TrEMBL
Match: tr|A5ADZ0|A5ADZ0_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_000181 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.6e-08
Identity = 44/128 (34.38%), Postives = 63/128 (49.22%), Query Frame = 0


Query: 1   MAHRITPSLFPIFLVILAMTGEAVAARDFP---ERV-------------SVLIPGIGRIT 60
           MAH +  SL  + ++   + G+A+AAR+ P   ++V             S+LIPG+GR+ 
Sbjct: 1   MAHSLQASLIALLVIFNVLLGQAIAAREVPNDSKKVDKKQPEWFIEPDGSLLIPGLGRVM 60

Query: 61  LSPYDKGSHGGGHSSSYGSNP----------APKRQYIPGGDDNFIPNPGYEVPIPANIG 103
           +  Y      G ++   GS P               YIPGGDD F+PNPG E+P PA  G
Sbjct: 61  VPGY------GSYTPYDGSIPXXXXXXXXXXXXXXXYIPGGDDTFVPNPGVEIPNPAGGG 120

The following BLAST results are available for this feature:

BLAST of MELO3C013561.2.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022970746.1	9.3e-32	64.71	putative cell wall protein [Cucurbita maxima]	[more]
KGN46699.1	2.7e-31	76.47	hypothetical protein Csa_6G124140 [Cucumis sativus]	[more]
XP_022140620.1	4.3e-21	78.57	putative cell wall protein [Momordica charantia]	[more]
XP_008230254.1	3.1e-11	39.20	PREDICTED: putative cell wall protein [Prunus mume]	[more]
WP_088493096.1	6.9e-11	38.84	hypothetical protein [Porphyromonas gingivalis] >XP_007216421.1 putative cell wa...	[more]

BLAST of MELO3C013561.2.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G20870.1	3.7e-06	39.13	cell wall protein precursor, putative	[more]

BLAST of MELO3C013561.2.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P47925\|CWPX_ARATH	6.6e-05	39.13	Putative cell wall protein OS=Arabidopsis thaliana OX=3702 GN=At2g20870 PE=2 SV=...	[more]

BLAST of MELO3C013561.2.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KCX5\|A0A0A0KCX5_CUCSA	1.8e-31	76.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G124140 PE=4 SV=1	[more]
tr\|M5XEW2\|M5XEW2_PRUPE	4.6e-11	38.84	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G234900 PE=4 SV=1	[more]
tr\|W9QZW5\|W9QZW5_9ROSA	5.6e-09	37.90	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_022158 PE=4 SV=1	[more]
tr\|F6HIG9\|F6HIG9_VITVI	1.6e-08	35.16	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0059g01830 PE=4 SV=...	[more]
tr\|A5ADZ0\|A5ADZ0_VITVI	3.6e-08	34.38	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_000181 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR034565	Put_cell_wall

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C013561.2	MELO3C013561.2	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C013561.2.1.CDS.2	MELO3C013561.2.1.CDS.2	CDS
MELO3C013561.2.1.CDS.1	MELO3C013561.2.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C013561.2.1.exon.2	MELO3C013561.2.1.exon.2	exon
MELO3C013561.2.1.exon.1	MELO3C013561.2.1.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C013561.2.1	MELO3C013561.2.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..77
IPR034565	Putative cell wall protein	PANTHER	PTHR36733	FAMILY NOT NAMED	coord: 29..102