MELO3C013561.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C013561.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Transmembrane protein, putative
Location	chr11 : 17623956 .. 17624318 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCACAGAATCACACCTTCTCTGTTCCCTATCTTCCTTGTGATCCTCGCAATGACTGGAGAAGCAGTTGCAGCACGTGATTTTCCTGAAAGGTCGAGCAGTGATGATGATAAGAAACAGCCTTAATGGCTGATTGGATATGATAGGGTCAGTGTGCTAATTCCTGGCATTGGACGCATCACATTGTCACCATACGACAAAGGCAGCCATGGAGGAGGGCATTCGAGTTCATATGGCAGTAACCCAGCTCCAAAACGTCAATATATTCCAGGTGGGGATGATAATTTCATTCCAAATCCTGGATATGAGGTGCCAATCCCTGCCAATATTGGTGGTGTTAAAGAAACATCCTATCCTTGA

mRNA sequence

ATGGCTCACAGAATCACACCTTCTCTGTTCCCTATCTTCCTTGTGATCCTCGCAATGACTGGAGAAGCAGTTGCAGCACGTGATTTTCCTGAAAGGGTCAGTGTGCTAATTCCTGGCATTGGACGCATCACATTGTCACCATACGACAAAGGCAGCCATGGAGGAGGGCATTCGAGTTCATATGGCAGTAACCCAGCTCCAAAACGTCAATATATTCCAGGTGGGGATGATAATTTCATTCCAAATCCTGGATATGAGGTGCCAATCCCTGCCAATATTGGTGGTGTTAAAGAAACATCCTATCCTTGA

Coding sequence (CDS)

ATGGCTCACAGAATCACACCTTCTCTGTTCCCTATCTTCCTTGTGATCCTCGCAATGACTGGAGAAGCAGTTGCAGCACGTGATTTTCCTGAAAGGGTCAGTGTGCTAATTCCTGGCATTGGACGCATCACATTGTCACCATACGACAAAGGCAGCCATGGAGGAGGGCATTCGAGTTCATATGGCAGTAACCCAGCTCCAAAACGTCAATATATTCCAGGTGGGGATGATAATTTCATTCCAAATCCTGGATATGAGGTGCCAATCCCTGCCAATATTGGTGGTGTTAAAGAAACATCCTATCCTTGA

Protein sequence

MAHRITPSLFPIFLVILAMTGEAVAARDFPERVSVLIPGIGRITLSPYDKGSHGGGHSSSYGSNPAPKRQYIPGGDDNFIPNPGYEVPIPANIGGVKETSYP

Homology

[Close]

BLAST of MELO3C013561.2 vs. NCBI nr
Match: XP_022970746.1 (putative cell wall protein [Cucurbita maxima])

HSP 1 Score: 145.6 bits (366), Expect = 9.3e-32
Identity = 77/119 (64.71%), Postives = 85/119 (71.43%), Query Frame = 0


Query: 1   MAHRITPSLFPIFLVILAMTGEAVAARDFPER-----------------VSVLIPGIGRI 60
           MA+R   SL   F+VILA+ GEAVAAR+  ER                 VSVLIPGIGR 
Sbjct: 1   MANRTIASLLATFIVILAIAGEAVAARNVHERSSIDDKKQPEWVAGHDGVSVLIPGIGRF 60

Query: 61  TLSPYDKGSHGGGHSSSYGSNPAPKRQYIPGGDDNFIPNPGYEVPIPANIGGVKETSYP 103
           TLSP+DKGS G G + SYGSNPAP+RQYIPGGDDNFIPNPG+EVPIPA I GVKET YP
Sbjct: 61  TLSPHDKGSSGEGQAGSYGSNPAPRRQYIPGGDDNFIPNPGFEVPIPAKISGVKETPYP 119

[Close]

BLAST of MELO3C013561.2 vs. NCBI nr
Match: KGN46699.1 (hypothetical protein Csa_6G124140 [Cucumis sativus])

HSP 1 Score: 144.1 bits (362), Expect = 2.7e-31
Identity = 78/102 (76.47%), Postives = 82/102 (80.39%), Query Frame = 0


Query: 1   MAHRITPSLFPIFLVILAMTGEAVAARDFPERVSVLIPGIGRITLSPYDKGSHGGGHSSS 60
           MAHRI PS+ PIFLVILAMTGEAVA       VSVLIPGIGR+TLS        GGHSSS
Sbjct: 1   MAHRIIPSMLPIFLVILAMTGEAVA---LCSTVSVLIPGIGRLTLS-------RGGHSSS 60

Query: 61  YGSNPAPKRQYIPGGDDNFIPNPGYEVPIPANIGGVKETSYP 103
           YGSNPAP+RQYIPGGD NFIPNPGYEV I A+IGGVKETSYP
Sbjct: 61  YGSNPAPRRQYIPGGDGNFIPNPGYEVRITADIGGVKETSYP 92

[Close]

BLAST of MELO3C013561.2 vs. NCBI nr
Match: XP_022140620.1 (putative cell wall protein [Momordica charantia])

HSP 1 Score: 110.2 bits (274), Expect = 4.3e-21
Identity = 55/70 (78.57%), Postives = 58/70 (82.86%), Query Frame = 0


Query: 33  VSVLIPGIGRITLSPYDKGSHGGGHSSSYGSNPAPKRQYIPGGDDNFIPNPGYEVPIPAN 92
           VSVLIPGIGRITL PYDKGS  G H+ SYGSNPA   QYIPGGDDNFIPNPG+EVP PAN
Sbjct: 51  VSVLIPGIGRITLPPYDKGSF-GEHAGSYGSNPASSGQYIPGGDDNFIPNPGFEVPNPAN 110

Query: 93  IGGVKETSYP 103
           IG VK T +P
Sbjct: 111 IGVVKATPHP 119

[Close]

BLAST of MELO3C013561.2 vs. NCBI nr
Match: XP_008230254.1 (PREDICTED: putative cell wall protein [Prunus mume])

HSP 1 Score: 77.4 bits (189), Expect = 3.1e-11
Identity = 49/125 (39.20%), Postives = 60/125 (48.00%), Query Frame = 0


Query: 1   MAHRITPSLFP---IFLVILAMTGEAVAARDFPER-------------VSVLIPGIGRIT 60
           MA +   S  P   + +V+LA+TG+AVA R  P +              S LIPGIGR+ 
Sbjct: 1   MADKTRSSFLPLISLLVVLLAITGQAVAGRSVPTKDDKKQPEWFIGHDGSHLIPGIGRVI 60

Query: 61  LSPY----------DKGSHGGGHSSSYGSNPAPKRQYIPGGDDNFIPNPGYEVPIPANIG 100
             P           D GS G    S  G  P+    Y+PGGDD F+PNPGYEVP P N  
Sbjct: 61  FPPLHNVVPQTPFPDNGSTGNTGGSGSGEAPSTGHDYVPGGDDTFVPNPGYEVPNPGNGA 120

[Close]

BLAST of MELO3C013561.2 vs. NCBI nr
Match: WP_088493096.1 (hypothetical protein [Porphyromonas gingivalis] >XP_007216421.1 putative cell wall protein [Prunus persica] >ONI18729.1 hypothetical protein PRUPE_3G234900 [Prunus persica] >OWR80120.1 hypothetical protein SJDPG4_10125 [Porphyromonas gingivalis SJD4])

HSP 1 Score: 76.3 bits (186), Expect = 6.9e-11
Identity = 47/121 (38.84%), Postives = 60/121 (49.59%), Query Frame = 0


Query: 1   MAHRITPSLFP---IFLVILAMTGEAVAARDFPER-------------VSVLIPGIGRIT 60
           MA +   S  P   I +V+LA+TG+AVA R  P +              S LIPG+GR+ 
Sbjct: 1   MADKTRTSFLPLISILVVLLAITGQAVAGRSVPTKDDKKQPEWFIGHDGSYLIPGLGRVL 60

Query: 61  LSPY----------DKGSHGGGHSSSYGSNPAPKRQYIPGGDDNFIPNPGYEVPIPANIG 96
           + P           + G  G    S  G  P+    Y+PGGDD F+PNPGYEVPIP N  
Sbjct: 61  IPPRHNVVPQTPFPNNGRTGSTGGSGSGQTPSTGHDYVPGGDDTFVPNPGYEVPIPGNGA 120

[Close]

BLAST of MELO3C013561.2 vs. TAIR10
Match: AT2G20870.1 (cell wall protein precursor, putative)

HSP 1 Score: 48.1 bits (113), Expect = 3.7e-06
Identity = 27/69 (39.13%), Postives = 33/69 (47.83%), Query Frame = 0


Query: 34  SVLIPGIGRITLSPYDKGSH------------GGGHSSSYGSNPAPKRQYIPGGDDNFIP 91
           ++LIPG+GR  L P  K               GGG  S  G   A     +PGGDD  +P
Sbjct: 54  TILIPGVGRFLLPPKCKKPFYPYNPVTGAPLTGGGIPSYNGGQGAGPHTQLPGGDDTLVP 113

[Close]

BLAST of MELO3C013561.2 vs. Swiss-Prot
Match: sp|P47925|CWPX_ARATH (Putative cell wall protein OS=Arabidopsis thaliana OX=3702 GN=At2g20870 PE=2 SV=2)

HSP 1 Score: 48.1 bits (113), Expect = 6.6e-05
Identity = 27/69 (39.13%), Postives = 33/69 (47.83%), Query Frame = 0


Query: 34  SVLIPGIGRITLSPYDKGSH------------GGGHSSSYGSNPAPKRQYIPGGDDNFIP 91
           ++LIPG+GR  L P  K               GGG  S  G   A     +PGGDD  +P
Sbjct: 54  TILIPGVGRFLLPPKCKKPFYPYNPVTGAPLTGGGIPSYNGGQGAGPHTQLPGGDDTLVP 113

[Close]

BLAST of MELO3C013561.2 vs. TrEMBL
Match: tr|A0A0A0KCX5|A0A0A0KCX5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G124140 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.8e-31
Identity = 78/102 (76.47%), Postives = 82/102 (80.39%), Query Frame = 0


Query: 1   MAHRITPSLFPIFLVILAMTGEAVAARDFPERVSVLIPGIGRITLSPYDKGSHGGGHSSS 60
           MAHRI PS+ PIFLVILAMTGEAVA       VSVLIPGIGR+TLS        GGHSSS
Sbjct: 1   MAHRIIPSMLPIFLVILAMTGEAVA---LCSTVSVLIPGIGRLTLS-------RGGHSSS 60

Query: 61  YGSNPAPKRQYIPGGDDNFIPNPGYEVPIPANIGGVKETSYP 103
           YGSNPAP+RQYIPGGD NFIPNPGYEV I A+IGGVKETSYP
Sbjct: 61  YGSNPAPRRQYIPGGDGNFIPNPGYEVRITADIGGVKETSYP 92

[Close]

BLAST of MELO3C013561.2 vs. TrEMBL
Match: tr|M5XEW2|M5XEW2_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G234900 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.6e-11
Identity = 47/121 (38.84%), Postives = 60/121 (49.59%), Query Frame = 0


Query: 1   MAHRITPSLFP---IFLVILAMTGEAVAARDFPER-------------VSVLIPGIGRIT 60
           MA +   S  P   I +V+LA+TG+AVA R  P +              S LIPG+GR+ 
Sbjct: 1   MADKTRTSFLPLISILVVLLAITGQAVAGRSVPTKDDKKQPEWFIGHDGSYLIPGLGRVL 60

Query: 61  LSPY----------DKGSHGGGHSSSYGSNPAPKRQYIPGGDDNFIPNPGYEVPIPANIG 96
           + P           + G  G    S  G  P+    Y+PGGDD F+PNPGYEVPIP N  
Sbjct: 61  IPPRHNVVPQTPFPNNGRTGSTGGSGSGQTPSTGHDYVPGGDDTFVPNPGYEVPIPGNGA 120

[Close]

BLAST of MELO3C013561.2 vs. TrEMBL
Match: tr|W9QZW5|W9QZW5_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_022158 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.6e-09
Identity = 47/124 (37.90%), Postives = 58/124 (46.77%), Query Frame = 0


Query: 15  VILAMTGEAVAARDFPER---------------VSVLIPGIGRITLSPYDKGSHG----- 74
           ++L+M  EAVA R  P+                 SVLIPG+GR+ L P   G HG     
Sbjct: 17  ILLSMANEAVAGRSVPKEGADVKQPEWLVDHHDGSVLIPGLGRVLLPPL-HGHHGLHKDH 76

Query: 75  ---------GGHSS-------SYGSNPAPKRQYIPGGDDNFIPNPGYEVPIPANIGGVKE 103
                    G +SS        +G  P+  R YIPGGDD  +PNPG+EVPIP   GG   
Sbjct: 77  DHLYYNPITGTYSSGTGRAPLGHGIIPSTPRSYIPGGDDTLVPNPGFEVPIPGRSGGPPV 136

[Close]

BLAST of MELO3C013561.2 vs. TrEMBL
Match: tr|F6HIG9|F6HIG9_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0059g01830 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.6e-08
Identity = 45/128 (35.16%), Postives = 63/128 (49.22%), Query Frame = 0


Query: 1   MAHRITPSLFPIFLVILAMTGEAVAARDFP---ERV-------------SVLIPGIGRIT 60
           MAH +  SL  + ++   + G+A+AAR+ P   ++V             S+LIPG+GR+ 
Sbjct: 1   MAHSLQASLIALLVIFNVLLGQAIAAREVPNDSKKVDKKQPEWFIEPDGSLLIPGLGRVM 60

Query: 61  LSPYDKGSHGGGHSSSYGSNP----------APKRQYIPGGDDNFIPNPGYEVPIPANIG 103
           +  Y      G ++   GS P               YIPGGDD F+PNPG E+P PA  G
Sbjct: 61  VPGY------GSYTPYDGSIPXXXXXXXXXXXXXXXYIPGGDDTFVPNPGVEIPNPAGGG 120

[Close]

BLAST of MELO3C013561.2 vs. TrEMBL
Match: tr|A5ADZ0|A5ADZ0_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_000181 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.6e-08
Identity = 44/128 (34.38%), Postives = 63/128 (49.22%), Query Frame = 0


Query: 1   MAHRITPSLFPIFLVILAMTGEAVAARDFP---ERV-------------SVLIPGIGRIT 60
           MAH +  SL  + ++   + G+A+AAR+ P   ++V             S+LIPG+GR+ 
Sbjct: 1   MAHSLQASLIALLVIFNVLLGQAIAAREVPNDSKKVDKKQPEWFIEPDGSLLIPGLGRVM 60

Query: 61  LSPYDKGSHGGGHSSSYGSNP----------APKRQYIPGGDDNFIPNPGYEVPIPANIG 103
           +  Y      G ++   GS P               YIPGGDD F+PNPG E+P PA  G
Sbjct: 61  VPGY------GSYTPYDGSIPXXXXXXXXXXXXXXXYIPGGDDTFVPNPGVEIPNPAGGG 120

The following BLAST results are available for this feature:

BLAST of MELO3C013561.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022970746.1	9.3e-32	64.71	putative cell wall protein [Cucurbita maxima]	[more]
KGN46699.1	2.7e-31	76.47	hypothetical protein Csa_6G124140 [Cucumis sativus]	[more]
XP_022140620.1	4.3e-21	78.57	putative cell wall protein [Momordica charantia]	[more]
XP_008230254.1	3.1e-11	39.20	PREDICTED: putative cell wall protein [Prunus mume]	[more]
WP_088493096.1	6.9e-11	38.84	hypothetical protein [Porphyromonas gingivalis] >XP_007216421.1 putative cell wa...	[more]

BLAST of MELO3C013561.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G20870.1	3.7e-06	39.13	cell wall protein precursor, putative	[more]

BLAST of MELO3C013561.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P47925\|CWPX_ARATH	6.6e-05	39.13	Putative cell wall protein OS=Arabidopsis thaliana OX=3702 GN=At2g20870 PE=2 SV=...	[more]

BLAST of MELO3C013561.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KCX5\|A0A0A0KCX5_CUCSA	1.8e-31	76.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G124140 PE=4 SV=1	[more]
tr\|M5XEW2\|M5XEW2_PRUPE	4.6e-11	38.84	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G234900 PE=4 SV=1	[more]
tr\|W9QZW5\|W9QZW5_9ROSA	5.6e-09	37.90	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_022158 PE=4 SV=1	[more]
tr\|F6HIG9\|F6HIG9_VITVI	1.6e-08	35.16	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0059g01830 PE=4 SV=...	[more]
tr\|A5ADZ0\|A5ADZ0_VITVI	3.6e-08	34.38	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_000181 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR034565	Put_cell_wall

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C013561.2.1	MELO3C013561.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..77
IPR034565	Putative cell wall protein	PANTHER	PTHR36733	FAMILY NOT NAMED	coord: 29..102

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C013561.2	Csa6G124140	Cucumber (Chinese Long) v2	cumedB405
MELO3C013561.2	CSPI06G10060	Wild cucumber (PI 183967)	cpimedB414
MELO3C013561.2	Cucsa.119480	Cucumber (Gy14) v1	cgymedB177

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C013561.2	Cucumber (Gy14) v2	cgybmedB390
MELO3C013561.2	Cucumber (Gy14) v1	cgymedB176
MELO3C013561.2	Cucurbita maxima (Rimu)	cmamedB586
MELO3C013561.2	Cucurbita maxima (Rimu)	cmamedB623
MELO3C013561.2	Cucurbita moschata (Rifu)	cmomedB566
MELO3C013561.2	Cucurbita moschata (Rifu)	cmomedB610
MELO3C013561.2	Cucurbita pepo (Zucchini)	cpemedB309
MELO3C013561.2	Cucurbita pepo (Zucchini)	cpemedB808
MELO3C013561.2	Wild cucumber (PI 183967)	cpimedB440
MELO3C013561.2	Cucumber (Chinese Long) v2	cumedB431
MELO3C013561.2	Bottle gourd (USVL1VR-Ls)	lsimedB061
MELO3C013561.2	Silver-seed gourd	carmedB0032
MELO3C013561.2	Silver-seed gourd	carmedB0349
MELO3C013561.2	Cucumber (Chinese Long) v3	cucmedB444
MELO3C013561.2	Wax gourd	medwgoB121