MELO3C013557T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C013557T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionTrifunctional enzyme subunit beta, mitochondrial
Locationchr11 : 16648422 .. 16648574 (-)
Sequence length153
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCGAGGTAGACCTCGAAAGCACCCTGATGCAAAAGCTAGTAATGCTGCTAGAGAAGCAGGGATGGGAAGTGGGGAGTCTGATGCCGAATCTAGTCGCCCTCACGTTGAGGGGAACATGGAAGAACAATTGCTTGATAGATTGGCTTAA

mRNA sequence

ATGCCTCGAGGTAGACCTCGAAAGCACCCTGATGCAAAAGCTAGTAATGCTGCTAGAGAAGCAGGGATGGGAAGTGGGGAGTCTGATGCCGAATCTAGTCGCCCTCACGTTGAGGGGAACATGGAAGAACAATTGCTTGATAGATTGGCTTAA

Coding sequence (CDS)

ATGCCTCGAGGTAGACCTCGAAAGCACCCTGATGCAAAAGCTAGTAATGCTGCTAGAGAAGCAGGGATGGGAAGTGGGGAGTCTGATGCCGAATCTAGTCGCCCTCACGTTGAGGGGAACATGGAAGAACAATTGCTTGATAGATTGGCTTAA

Protein sequence

MPRGRPRKHPDAKASNAAREAGMGSGESDAESSRPHVEGNMEEQLLDRLA*
Homology
[Close]
BLAST of MELO3C013557T1 vs. NCBI nr
Match: gi|659072264|ref|XP_008464580.1| (PREDICTED: uncharacterized protein LOC103502419 [Cucumis melo])

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-18
Identity = 48/50 (96.00%), Postives = 48/50 (96.00%), Query Frame = 1 

Query: 1  MPRGRPRKHPDAKASNAAREAGMGSGESDAESSRPHVEGNMEEQLLDRLA 51
          MPRGRPRKHPDAK SNAAREA MGSGESDAESSRPHVEGNMEEQLLDRLA
Sbjct: 20 MPRGRPRKHPDAKTSNAAREAAMGSGESDAESSRPHVEGNMEEQLLDRLA 69

[Close]
BLAST of MELO3C013557T1 vs. NCBI nr
Match: gi|659068829|ref|XP_008446512.1| (PREDICTED: uncharacterized protein LOC103489219 [Cucumis melo])

HSP 1 Score: 84.0 bits (206), Expect = 8.5e-14
Identity = 42/50 (84.00%), Postives = 44/50 (88.00%), Query Frame = 1 

Query: 1  MPRGRPRKHPDAKASNAAREAGMGSGESDAESSRPHVEGNMEEQLLDRLA 51
          MPRGRPRK P A+ASNAAREA M S E DAESSRPHVEGN+EEQLLDRLA
Sbjct: 1  MPRGRPRKRPVAEASNAAREAAMESEEPDAESSRPHVEGNVEEQLLDRLA 50

[Close]
BLAST of MELO3C013557T1 vs. NCBI nr
Match: gi|659129924|ref|XP_008464914.1| (PREDICTED: uncharacterized protein LOC103502672 [Cucumis melo])

HSP 1 Score: 65.9 bits (159), Expect = 2.4e-08
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 1 

Query: 1  MPRGRPRKHPDAKASNAAREAGMGSGESDAESSRPHV 38
          MPRGRPRKHPD + SNAARE  +GSGESDAESSRP +
Sbjct: 41 MPRGRPRKHPDVEVSNAAREVAIGSGESDAESSRPQI 77

The following BLAST results are available for this feature:
BLAST of MELO3C013557T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659072264|ref|XP_008464580.1|1.2e-1896.00PREDICTED: uncharacterized protein LOC103502419 [Cucumis melo][more]
gi|659068829|ref|XP_008446512.1|8.5e-1484.00PREDICTED: uncharacterized protein LOC103489219 [Cucumis melo][more]
gi|659129924|ref|XP_008464914.1|2.4e-0878.38PREDICTED: uncharacterized protein LOC103502672 [Cucumis melo][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C013557MELO3C013557gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C013557T1MELO3C013557T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C013557T1.cds1MELO3C013557T1.cds1CDS